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changelog.md

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v0.3.1: 04/05/24

Changes

  • Add output prefix option (takes directory or directory + prefix name)
  • Deprecate outdir (maintain backwards compatibility until v1.0)
  • Fix bug in call-reads where a read with partial exon2 (only) coverage blows up candidate pool
  • Catch error from aligned inputs with wrong reference

v0.3.0: 03/21/24

Changes

  • New tool call-reads to call from HiFi reads (limited to class I)
  • Extend reports for read-based calls
  • Update IPD-IMGT/HLA to version 3.55 (2024-01)
  • Add option to limit calls to genomic (full-length) records
  • Update README

v0.2.3: 12/22/23

Changes

  • Fix reporting bug for cdna calls
  • Add option to require exon 2 to make a call
  • Improved thread control and error reporting

v0.2.2: 11/17/23

Changes

  • Update database to IPD-IMGT/HLA Version: 3.54 (2023-10)

v0.2.1: 11/15/23

Changes

  • Call-contigs hap2 change to optional
  • Improve output determinism
  • Update README
  • Fix validation bugs

v0.2.0: 9/25/23

Changes

  • Update README for initial release
  • Latest database version v3.53
  • Bug fixes

v0.1.0: 5/31/23

Changes

  • Report results in tsv and json format