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tri_unpart_mis1.out
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tri_unpart_mis1.out
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--------------------------------------
Running PBS prologue script
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User and Job Data:
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Job ID: 798299.qb3
Username: tyler333
Group: loniusers
Date: 18-Jun-2020 12:44
Node: qb379 (86943)
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PBS has allocated the following nodes:
qb379
A total of 20 processors on 1 nodes allocated
---------------------------------------------
Check nodes and clean them of stray processes
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Checking node qb379 12:44:37
Done clearing all the allocated nodes
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Concluding PBS prologue script - 18-Jun-2020 12:44:37
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*.nex
[1592502279.320168] [qb379:87555:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default >
[1592502279.319642] [qb379:87556:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default >
[1592502279.319835] [qb379:87557:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default >
[1592502279.319975] [qb379:87560:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default >
[1592502279.320417] [qb379:87561:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default >
[1592502279.319717] [qb379:87552:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default >
[1592502279.320510] [qb379:87559:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default >
[1592502279.320760] [qb379:87558:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default >
[1592502279.320679] [qb379:87553:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default >
[1592502279.320850] [qb379:87554:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default >
RevBayes version (1.0.12)
Build from development (59d42d) on Thu Aug 8 11:12:04 CDT 2019
MPI enabled: using 10 processes.
Visit the website www.RevBayes.com for more information about RevBayes.
RevBayes is free software released under the GPL license, version 3. Type 'license()' for details.
To quit RevBayes type 'quit()' or 'q()'.
> source("/work/tyler333/matrix_assumptions/scripts/analytical_unpartititioned/mcmc_simple.Rev")
Processing file "/work/tyler333/matrix_assumptions/scripts/analytical_unpartititioned/mcmc_simple.Rev"
Error: Could not find file or path with name "binary/simulated_missing_third/bin"
Error: Problem processing line 16 in file "/work/tyler333/matrix_assumptions/scripts/analytical_unpartititioned/mcmc_simple.Rev"
> mv: cannot stat `/work/tyler333/matrix_assumptions/data/binary/simulated_missing_third/1/output/part_out/simple.log': No such file or directory
mv: cannot stat `/work/tyler333/matrix_assumptions/data/binary/simulated_missing_third/1/output/part_out/simple.trees': No such file or directory
mv: cannot stat `/work/tyler333/matrix_assumptions/data/binary/simulated_missing_third/1/output/part_out/simple.map.tre': No such file or directory
mv: cannot stat `/work/tyler333/matrix_assumptions/data/binary/simulated_missing_third/1/output/part_out/simple.majrule.tre': No such file or directory
mv: target `/work/tyler333/matrix_assumptions/output/trinary/unpartitioned/processed_nex/1.nex' is not a directory
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Running PBS epilogue script - 18-Jun-2020 12:44:40
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Checking node qb379 (MS)
Checking node qb379 ok
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Concluding PBS epilogue script - 18-Jun-2020 12:44:42
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Exit Status: 1
Job ID: 798299.qb3
Username: tyler333
Group: loniusers
Job Name: tri_unpart_mis1
Session Id: 86942
Resource Limits: ncpus=1,neednodes=1:ppn=20,nodes=1:ppn=20,walltime=72:00:00
Resources Used: cput=00:00:06,mem=0kb,vmem=0kb,walltime=00:00:05
Queue Used: workq
Account String: loni_antfbg
Node: qb379
Process id: 87590
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