ci_pipeline.yml

---

name: CI pipeline for pySDC

on:
  push:
  pull_request:
  schedule:
    - cron: '1 5 * * 1'

jobs:

  lint:
    runs-on: ubuntu-latest
    env:
      YML: 'etc/environment-lint.yml'
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - name: Checkout
        uses: actions/checkout@v1
      - name: Install Conda environment with Micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: ${{ env.YML }}
          create-args: >-
              python=3.12
      - name: Code reformatting with black
        run: |
          black pySDC  --check --diff --color
      - name: Linting with ruff
        run: |
          ruff check pySDC

  user_cpu_tests_linux:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        env: ['base', 'fenics', 'mpi4py', 'petsc', 'pytorch']
        python: ['3.9', '3.10', '3.11', '3.12']
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Install Conda environment with Micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: "etc/environment-${{ matrix.env }}.yml"
          create-args: >-
              python=${{ matrix.python }}
      - name: Install additional packages as needed
        run: |
          micromamba install -y --file etc/environment-tests.yml --freeze-installed
      - name: Run pytest for CPU stuff
        run: |
          echo "print('Loading sitecustomize.py...')
          import coverage
          coverage.process_startup() " > sitecustomize.py
          coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/tests -m ${{ matrix.env }}
      - name: Make coverage report
        run: |
          coverage combine
          mv .coverage coverage_${{ matrix.env }}.dat
      - name: Uploading artifacts
        uses: actions/upload-artifact@v4
        if: matrix.python == '3.12'
        with:
          name: test-artifacts-cpu-${{ matrix.env }}
          path: |
            data
            coverage_${{ matrix.env }}.dat

  project_cpu_tests_linux:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        env: 
          - AllenCahn_Bayreuth
          - AsympConv
          - DAE
          - FastWaveSlowWave
          - Hamiltonian
          - matrixPFASST
          - parallelSDC
          - parallelSDC_reloaded
          - PinTSimE
          - RDC
          - Resilience
          - SDC_showdown
          - Second_orderSDC
          - soft_failure
          - TOMS
        python: ['3.9', '3.10', '3.11', '3.12']
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Install Conda environment with Micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: "pySDC/projects/${{ matrix.env }}/environment.yml"
          create-args: >-
              python=${{ matrix.python }}
      - name: Install additional packages as needed
        run: |
          micromamba install -y --file etc/environment-tests.yml --freeze-installed
      - name: Run pytest for CPU stuff
        run: |
          echo "print('Loading sitecustomize.py...')
          import coverage
          coverage.process_startup() " > sitecustomize.py
          coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/${{ matrix.env }}/tests
      - name: Make coverage report
        run: |
          coverage combine
          mv .coverage coverage_${{ matrix.env }}.dat
      - name: Uploading artifacts
        uses: actions/upload-artifact@v4
        if: matrix.python == '3.12'
        with:
          name: test-artifacts-project-${{ matrix.env }}
          path: |
            data
            coverage_${{ matrix.env }}.dat

  user_libpressio_tests:
    runs-on: ubuntu-latest
    container:
      image: brownbaerchen/libpressio:amd64_2
      volumes:
        - ${{ github.workspace }}:/pySDC
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Install pySDC and pytest
        run: |
          source /pySDC/pySDC/projects/compression/Docker/install_pySDC.sh
      - name: Run pytest
        run: |
          source /opt/spack/share/spack/setup-env.sh
          spack load libpressio
           
          coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/compression/tests -m libpressio
      - name: Make coverage report
        run: |
          source /opt/spack/share/spack/setup-env.sh
          spack load libpressio

          mv data data_libpressio
          coverage combine
          mv .coverage coverage_libpressio.dat
      - name: Upload artifacts
        uses: actions/upload-artifact@v4
        with:
          name: test-artifacts-libpressio
          path: |
            data_libpressio
            coverage_libpressio.dat
         
  user_monodomain_tests_linux:
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Install Conda environment with Micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: "pySDC/projects/Monodomain/etc/environment-monodomain.yml"
          create-args: >-
              python=3.12
      - name: Compile C++ ionic models
        env:
          IONIC_MODELS_PATH: "pySDC/projects/Monodomain/problem_classes/ionicmodels/cpp"
        run: >
          c++ -O3 -Wall -shared -std=c++11 -fPIC -fvisibility=hidden
          $(python3 -m pybind11 --includes)
          ${IONIC_MODELS_PATH}/bindings_definitions.cpp
          -o ${IONIC_MODELS_PATH}/ionicmodels$(python3-config --extension-suffix)
      - name: Run pytest for CPU stuff
        run: |
          echo "print('Loading sitecustomize.py...')
          import coverage
          coverage.process_startup() " > sitecustomize.py
          coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/Monodomain/tests -m monodomain
      - name: Make coverage report
        run: |
          mv data data_monodomain
          coverage combine
          mv .coverage coverage_monodomain.dat
      - name: Uploading artifacts
        uses: actions/upload-artifact@v4
        with:
          name: test-artifacts-monodomain
          path: |
            data_monodomain
            coverage_monodomain.dat