From 89067e043f010ef91d98f33cb8745d75775bc819 Mon Sep 17 00:00:00 2001 From: Taylor Salo Date: Fri, 10 May 2024 14:24:50 -0400 Subject: [PATCH] Fix the entrypoint path in the Dockerfile (#413) * Fix entrypoint in Docker file. * Update changelog. --- .versions.json | 3 ++- CHANGES.md | 28 ++++++++++++++++++++++++++++ CITATION.cff | 4 ++-- Dockerfile | 2 +- 4 files changed, 33 insertions(+), 4 deletions(-) diff --git a/.versions.json b/.versions.json index abcd663a3..36ef1708a 100644 --- a/.versions.json +++ b/.versions.json @@ -8,6 +8,7 @@ "0.2.5": "Ordering of probseg maps was incorrect.", "0.2.6": "Ordering of probseg maps was incorrect.", "0.2.7": "Ordering of probseg maps was incorrect.", - "0.2.8": "Ordering of probseg maps was incorrect." + "0.2.8": "Ordering of probseg maps was incorrect.", + "0.7.0": "Broken entrypoint for Docker/Apptainer." } } diff --git a/CHANGES.md b/CHANGES.md index f98798fdf..3b7706c49 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -1,3 +1,31 @@ +## 0.7.0 + +### 🛠 Breaking Changes + +* Rename QC metrics and output QC files as TSVs by @tsalo in https://github.com/PennLINC/aslprep/pull/375 +* Move atlases into a subfolder by @tsalo in https://github.com/PennLINC/aslprep/pull/377 + +### 🎉 Exciting New Features + +* Add --ignore fmap-jacobian option by @tsalo in https://github.com/PennLINC/aslprep/pull/385 +* Support lists in filter file with `*` or `null` by @tsalo in https://github.com/PennLINC/aslprep/pull/388 + +### 🐛 Bug Fixes + +* Flip order of transforms in `init_ds_volumes_wf` by @tsalo in https://github.com/PennLINC/aslprep/pull/392 + +### Other Changes + +* Use space definitions from niworkflows by @tsalo in https://github.com/PennLINC/aslprep/pull/378 +* Use niworkflows enhance-and-skullstrip workflow by @tsalo in https://github.com/PennLINC/aslprep/pull/371 +* Update Nilearn requirement to 0.10.3 by @tsalo in https://github.com/PennLINC/aslprep/pull/396 +* [ENH] Update docker image by @mattcieslak in https://github.com/PennLINC/aslprep/pull/409 +* [FIX] update to newer docker by @mattcieslak in https://github.com/PennLINC/aslprep/pull/412 +* Update codecov orb version by @tsalo in https://github.com/PennLINC/aslprep/pull/410 + +**Full Changelog**: https://github.com/PennLINC/aslprep/compare/0.6.0...0.7.0 + + ## 0.6.0 This release makes substantial changes to *ASLPrep*. diff --git a/CITATION.cff b/CITATION.cff index 67210e65c..8affe7c5b 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -124,5 +124,5 @@ keywords: - BIDS-App - Neuroimaging license: BSD-3-Clause -version: 0.6.0 -date-released: '2023-12-09' +version: 0.7.0 +date-released: '2024-05-09' diff --git a/Dockerfile b/Dockerfile index ba701f667..20a4084c1 100644 --- a/Dockerfile +++ b/Dockerfile @@ -17,7 +17,7 @@ RUN find $HOME -type d -exec chmod go=u {} + && \ RUN ldconfig WORKDIR /tmp/ -ENTRYPOINT ["/usr/local/miniconda/bin/aslprep"] +ENTRYPOINT ["/opt/conda/envs/aslprep/bin/aslprep"] ARG BUILD_DATE ARG VCS_REF