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networkx version issue #226

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tsalo opened this issue Mar 1, 2023 · 0 comments · Fixed by #227
Closed

networkx version issue #226

tsalo opened this issue Mar 1, 2023 · 0 comments · Fixed by #227
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@tsalo
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tsalo commented Mar 1, 2023

          Thank you. I tried the same call as above with the aslprep:unstable image, and now receive the following: 
230301-15:15:21,481 nipype.workflow IMPORTANT:
         ASLPrep started!
230301-15:15:21,854 nipype.workflow CRITICAL:
         ASLPrep failed: module 'networkx' has no attribute 'to_scipy_sparse_matrix'

This seems to be related to this change to Networkx with version 3.0: https://networkx.org/documentation/latest/release/migration_guide_from_2.x_to_3.0.html#replacing-numpy-scipy-matrices-with-arrays

Originally posted by @philjohnston in #196 (comment)

@tsalo tsalo added the bug Something isn't working label Mar 1, 2023
@tsalo tsalo closed this as completed in #227 Mar 1, 2023
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