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@PeptoneLtd

Peptone

World's first, end-to-end Protein Engineering Operating System (PeOS).

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  1. dspp-keras dspp-keras Public

    Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

    Python 169 21

  2. proteinmpnn_ddg proteinmpnn_ddg Public

    Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.

    Python 35 4

  3. ADOPT ADOPT Public

    ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers

    Jupyter Notebook 16 1

  4. nerfax nerfax Public

    An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.

    Jupyter Notebook 15 4

  5. Machine-learning-for-proteins Machine-learning-for-proteins Public

    Forked from yangkky/Machine-learning-for-proteins

    Listing of papers about machine learning for proteins.

    8 3

  6. pepkalc pepkalc Public

    Robust simulation software for the comprehensive evaluation of protein electrostatics in unfolded state.

    Python 5 1

Repositories

Showing 10 of 10 repositories
  • proteinmpnn_ddg Public

    Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.

    PeptoneLtd/proteinmpnn_ddg’s past year of commit activity
    Python 35 MIT 4 0 0 Updated Dec 10, 2024
  • ADOPT Public

    ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers

    PeptoneLtd/ADOPT’s past year of commit activity
    Jupyter Notebook 16 MIT 1 12 0 Updated Dec 3, 2024
  • contrastive-finetuning-plms Public

    Optimizing protein language models with Sentence Transformers - ADOPT2

    PeptoneLtd/contrastive-finetuning-plms’s past year of commit activity
    Python 3 Apache-2.0 1 0 0 Updated Dec 3, 2024
  • ColabDesign Public Forked from sokrypton/ColabDesign

    Making Protein Design accessible to all via Google Colab!

    PeptoneLtd/ColabDesign’s past year of commit activity
    Python 0 154 0 0 Updated Jun 19, 2024
  • nerfax Public

    An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.

    PeptoneLtd/nerfax’s past year of commit activity
    Jupyter Notebook 15 Apache-2.0 4 0 0 Updated Jun 12, 2024
  • pepkalc Public

    Robust simulation software for the comprehensive evaluation of protein electrostatics in unfolded state.

    PeptoneLtd/pepkalc’s past year of commit activity
    Python 5 1 0 0 Updated Aug 23, 2022
  • ProteoNeMo Public

    Ongoing research training transformer models on proteome at scale

    PeptoneLtd/ProteoNeMo’s past year of commit activity
    Python 5 Apache-2.0 1 3 0 Updated Aug 11, 2022
  • dspp-keras Public

    Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

    PeptoneLtd/dspp-keras’s past year of commit activity
    Python 169 AGPL-3.0 21 1 0 Updated Jun 15, 2022
  • Machine-learning-for-proteins Public Forked from yangkky/Machine-learning-for-proteins

    Listing of papers about machine learning for proteins.

    PeptoneLtd/Machine-learning-for-proteins’s past year of commit activity
    8 GPL-3.0 205 0 0 Updated Mar 15, 2021
  • dspp-data Public

    Database of Structural Propensities of Proteins (dSPP) raw data repository by Peptone Inc.

    PeptoneLtd/dspp-data’s past year of commit activity
    4 2 1 0 Updated Jun 4, 2017

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