From bb5edcdb3f7784af47af5275dbbb827ff825b89a Mon Sep 17 00:00:00 2001
From: hechth <helge.hecht@recetox.muni.cz>
Date: Mon, 26 Feb 2024 11:11:23 +0100
Subject: [PATCH] fix use_theoretical_mz_annotations tools Fixes #491

---
 tools/misc/macros.xml                         | 2 +-
 tools/misc/use_theoretical_mz_annotations.xml | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/tools/misc/macros.xml b/tools/misc/macros.xml
index e04f78d8..b6b09794 100644
--- a/tools/misc/macros.xml
+++ b/tools/misc/macros.xml
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">0.3.4</token>
+    <token name="@TOOL_VERSION@">1.0.0</token>
     <xml name="creator">
         <creator>
             <person
diff --git a/tools/misc/use_theoretical_mz_annotations.xml b/tools/misc/use_theoretical_mz_annotations.xml
index f7d2b5d3..84510737 100644
--- a/tools/misc/use_theoretical_mz_annotations.xml
+++ b/tools/misc/use_theoretical_mz_annotations.xml
@@ -1,4 +1,4 @@
-<tool id="use_theoretical_mz" name="use theoretical m/z values" version="@TOOL_VERSION@+galaxy4" profile="21.09">
+<tool id="use_theoretical_mz_annotations" name="use theoretical m/z values" version="@TOOL_VERSION@+galaxy0" profile="21.09">
     <description>Overwrite experimentally measured mz values for peaks with theoretical values from peak comments.</description>
     <macros>
         <import>macros.xml</import>
@@ -6,7 +6,7 @@
     <expand macro="creator"/>
 
     <command detect_errors="exit_code"><![CDATA[
-    python '$__tool_directory__/use_theoretical_mz_annotations.py'
+    python3 '$__tool_directory__/use_theoretical_mz_annotations.py'
     -i '${input}'
     -o '${output_data}' 
     #if $only_theoretical_annotated