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soft_BAPT

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Olivier Gueudelot edited this page Aug 10, 2016 · 3 revisions

Resume :

BAPT (Bioinformatics Pipeline Analysis Toolkit) aims to standardize analyzes (parameters of the tools validated pipelines are blocked), to facilitate the launch of pipelines and automate all processes performed on data from the high-throughput sequencing. Actually 2 pipes proposed : CaptureDiagConstit (CDC) which is validated and used for diagnostic and another one CaptureDiagSomatique which is still in validation.

  • Website
  • INPUTS : FASTQ, BCL
  • OUTPUTS : custom report (excel, pdf)
  • OS : Linux, Windows, MacOS (need excel for xls reports)
  • Techno : Java
Pros:
  • Pipes presets and validated for diagnostic
  • Same goal as Regovar - standardization of processes
Cons :
  • Not user friendly - command line
  • Pipe parameters blocked

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