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infection-temp-DEGs-counts_annot.tab
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infection-temp-DEGs-counts_annot.tab
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Trinity_ID 380822 380823 380824 380825 swissprot uniprot_acc_ID gene_id pident length mismatch gapopen qstart qend sstart send evalue bitscore Entry.name Status Protein.names Gene.names Organism Length Gene.ontology.biological.process Gene.ontology.cellular.component Gene.ontology.GO Gene.ontology.molecular.function Gene.ontology.IDs
TRINITY_DN7794_c3_g1_i3 0 60 0 61 sp Q9LD90 CBF5_ARATH 64.5 397 139 2 60 1247 8 403 4.2e-151 536.6 CBF5_ARATH reviewed H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (CBF5 homolog) (Dyskerin) (Nopp-140-associated protein of 57 kDa homolog) (AtNAP57) (Nucleolar protein NAP57 homolog) CBF5 NAP57 At3g57150 F24I3.230 Arabidopsis thaliana (Mouse-ear cress) 565 box H/ACA snoRNA 3'-end processing [GO:0000495]; mRNA pseudouridine synthesis [GO:1990481]; rRNA pseudouridine synthesis [GO:0031118]; snRNA pseudouridine synthesis [GO:0031120] box H/ACA snoRNP complex [GO:0031429]; cytosol [GO:0005829]; nucleolus [GO:0005730]; plasmodesma [GO:0009506] box H/ACA snoRNP complex [GO:0031429]; cytosol [GO:0005829]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; box H/ACA snoRNA 3'-end processing [GO:0000495]; mRNA pseudouridine synthesis [GO:1990481]; rRNA pseudouridine synthesis [GO:0031118]; snRNA pseudouridine synthesis [GO:0031120] pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723] GO:0000495; GO:0003723; GO:0005730; GO:0005829; GO:0009506; GO:0009982; GO:0031118; GO:0031120; GO:0031429; GO:1990481
TRINITY_DN12637_c0_g1_i2 0 58 0 98 sp Q66L33 MK16A_XENLA 54.4 195 86 2 200 781 1 193 1.1e-57 225.3 MK16A_XENLA reviewed Protein MAK16 homolog A (MAK16-like protein A) mak16-a mak16l-a Xenopus laevis (African clawed frog) 301 nucleolus [GO:0005730] nucleolus [GO:0005730] GO:0005730
TRINITY_DN2496_c0_g1_i1 0 67 0 185 sp P78946 RL26_SCHPO 57.9 76 32 0 74 301 1 76 3.7e-16 85.5 RL26_SCHPO reviewed 60S ribosomal protein L26 rpl26 SPBC29B5.03c Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 126 cytoplasmic translation [GO:0002181]; ribosomal large subunit biogenesis [GO:0042273] cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; nucleus [GO:0005634] cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; nucleus [GO:0005634]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; ribosomal large subunit biogenesis [GO:0042273] RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003723; GO:0003735; GO:0005634; GO:0005730; GO:0005829; GO:0022625; GO:0042273
TRINITY_DN8437_c0_g1_i1 0 50 0 101 sp Q8BW49 TTC12_MOUSE 38.1 118 71 2 814 1161 105 222 1.4e-12 75.9 TTC12_MOUSE reviewed Tetratricopeptide repeat protein 12 (TPR repeat protein 12) Ttc12 Mus musculus (Mouse) 704 centrosome [GO:0005813] centrosome [GO:0005813] GO:0005813
TRINITY_DN18109_c0_g1_i3 0 53 0 136 sp O77302 RS10_LUMRU 53.9 102 44 1 80 376 1 102 7.6e-23 109.4 RS10_LUMRU reviewed 40S ribosomal protein S10 RPS10 Lumbricus rubellus (Humus earthworm) 156 cytoplasm [GO:0005737]; ribosome [GO:0005840] cytoplasm [GO:0005737]; ribosome [GO:0005840] GO:0005737; GO:0005840
TRINITY_DN1373_c0_g1_i20 107 0 63 0 sp Q502I9 FCHO2_DANRE 33.5 1019 487 13 105 3119 6 847 6.2e-137 490.7 FCHO2_DANRE reviewed F-BAR domain only protein 2 fcho2 zgc:112167 Danio rerio (Zebrafish) (Brachydanio rerio) 848 chordate embryonic development [GO:0043009]; clathrin coat assembly [GO:0048268]; clathrin-dependent endocytosis [GO:0072583]; membrane invagination [GO:0010324]; protein localization to plasma membrane [GO:0072659]; synaptic vesicle endocytosis [GO:0048488] clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; plasma membrane [GO:0005886]; presynapse [GO:0098793] clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; plasma membrane [GO:0005886]; presynapse [GO:0098793]; cytoskeletal protein binding [GO:0008092]; phosphatidylinositol binding [GO:0035091]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; phosphatidylserine binding [GO:0001786]; chordate embryonic development [GO:0043009]; clathrin coat assembly [GO:0048268]; clathrin-dependent endocytosis [GO:0072583]; membrane invagination [GO:0010324]; protein localization to plasma membrane [GO:0072659]; synaptic vesicle endocytosis [GO:0048488] cytoskeletal protein binding [GO:0008092]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; phosphatidylinositol binding [GO:0035091]; phosphatidylserine binding [GO:0001786] GO:0001786; GO:0005546; GO:0005737; GO:0005856; GO:0005886; GO:0005905; GO:0008092; GO:0010324; GO:0030136; GO:0035091; GO:0043009; GO:0048268; GO:0048488; GO:0072583; GO:0072659; GO:0098793
TRINITY_DN9426_c0_g1_i20 0 83 0 118 sp Q5PQL3 SPP2B_RAT 39.1 486 273 8 204 1637 22 492 1.7e-75 285.4 SPP2B_RAT reviewed Signal peptide peptidase-like 2B (SPP-like 2B) (SPPL2b) (EC 3.4.23.-) Sppl2b Rattus norvegicus (Rat) 577 membrane protein ectodomain proteolysis [GO:0006509]; membrane protein intracellular domain proteolysis [GO:0031293]; membrane protein proteolysis [GO:0033619]; regulation of immune response [GO:0050776] actin cytoskeleton [GO:0015629]; centrosome [GO:0005813]; endosome membrane [GO:0010008]; Golgi-associated vesicle membrane [GO:0030660]; Golgi membrane [GO:0000139]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; integral component of lumenal side of endoplasmic reticulum membrane [GO:0071556]; lysosomal membrane [GO:0005765]; membrane [GO:0016020]; nucleoplasm [GO:0005654]; plasma membrane [GO:0005886] actin cytoskeleton [GO:0015629]; centrosome [GO:0005813]; endosome membrane [GO:0010008]; Golgi membrane [GO:0000139]; Golgi-associated vesicle membrane [GO:0030660]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; integral component of lumenal side of endoplasmic reticulum membrane [GO:0071556]; lysosomal membrane [GO:0005765]; membrane [GO:0016020]; nucleoplasm [GO:0005654]; plasma membrane [GO:0005886]; aspartic endopeptidase activity, intramembrane cleaving [GO:0042500]; protein homodimerization activity [GO:0042803]; membrane protein ectodomain proteolysis [GO:0006509]; membrane protein intracellular domain proteolysis [GO:0031293]; membrane protein proteolysis [GO:0033619]; regulation of immune response [GO:0050776] aspartic endopeptidase activity, intramembrane cleaving [GO:0042500]; protein homodimerization activity [GO:0042803] GO:0000139; GO:0005654; GO:0005765; GO:0005813; GO:0005886; GO:0006509; GO:0010008; GO:0015629; GO:0016020; GO:0030660; GO:0031293; GO:0033619; GO:0042500; GO:0042803; GO:0050776; GO:0071458; GO:0071556
TRINITY_DN6665_c0_g1_i1 0 23 0 126 sp Q27268 DX39B_DROME 65.1 427 140 4 83 1360 3 421 5.7e-156 552.4 DX39B_DROME reviewed ATP-dependent RNA helicase WM6 (DEAD box protein UAP56) (Dmrnahel) (EC 3.6.4.13) (HEL/UAP56) Hel25E Dbp25F hel WM6 CG7269 Drosophila melanogaster (Fruit fly) 424 chromatin remodeling [GO:0006338]; mRNA export from nucleus [GO:0006406]; mRNA splicing, via spliceosome [GO:0000398]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381] nuclear speck [GO:0016607]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; transcription export complex [GO:0000346] nuclear speck [GO:0016607]; nucleus [GO:0005634]; spliceosomal complex [GO:0005681]; transcription export complex [GO:0000346]; ATP binding [GO:0005524]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; chromatin remodeling [GO:0006338]; mRNA export from nucleus [GO:0006406]; mRNA splicing, via spliceosome [GO:0000398]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381] ATP binding [GO:0005524]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724] GO:0000346; GO:0000381; GO:0000398; GO:0003723; GO:0003724; GO:0005524; GO:0005634; GO:0005681; GO:0006338; GO:0006406; GO:0016607
TRINITY_DN1556_c0_g1_i1 0 19 0 145 sp Q54WR9 GLNA3_DICDI 37.5 704 395 10 298 2319 45 733 1.7e-127 458.8 GLNA3_DICDI reviewed Type-3 glutamine synthetase (EC 6.3.1.2) (Type-3 glutamate--ammonia ligase) (Type-3 GS) glnA3 glnB DDB_G0279591 Dictyostelium discoideum (Slime mold) 735 nitrogen compound metabolic process [GO:0006807]; response to bacterium [GO:0009617] phagocytic vesicle [GO:0045335] phagocytic vesicle [GO:0045335]; ATP binding [GO:0005524]; glutamate-ammonia ligase activity [GO:0004356]; nitrogen compound metabolic process [GO:0006807]; response to bacterium [GO:0009617] ATP binding [GO:0005524]; glutamate-ammonia ligase activity [GO:0004356] GO:0004356; GO:0005524; GO:0006807; GO:0009617; GO:0045335
TRINITY_DN1473_c3_g1_i11 0 45 0 114 sp P56941 NPC1_PIG 37.3 1441 660 29 338 4546 25 1259 2.1e-247 857.8 NPC1_PIG reviewed NPC intracellular cholesterol transporter 1 (Niemann-Pick C1 protein) NPC1 Sus scrofa (Pig) 1277 bile acid metabolic process [GO:0008206]; cholesterol homeostasis [GO:0042632]; cholesterol metabolic process [GO:0008203]; cholesterol transport [GO:0030301]; intracellular cholesterol transport [GO:0032367]; lysosomal transport [GO:0007041]; protein glycosylation [GO:0006486] endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; integral component of lysosomal membrane [GO:1905103]; integral component of plasma membrane [GO:0005887]; late endosome membrane [GO:0031902]; lysosome [GO:0005764]; nuclear envelope [GO:0005635]; perinuclear region of cytoplasm [GO:0048471] endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; integral component of lysosomal membrane [GO:1905103]; integral component of plasma membrane [GO:0005887]; late endosome membrane [GO:0031902]; lysosome [GO:0005764]; nuclear envelope [GO:0005635]; perinuclear region of cytoplasm [GO:0048471]; cholesterol binding [GO:0015485]; lipid transporter activity [GO:0005319]; bile acid metabolic process [GO:0008206]; cholesterol homeostasis [GO:0042632]; cholesterol metabolic process [GO:0008203]; cholesterol transport [GO:0030301]; intracellular cholesterol transport [GO:0032367]; lysosomal transport [GO:0007041]; protein glycosylation [GO:0006486] cholesterol binding [GO:0015485]; lipid transporter activity [GO:0005319] GO:0005319; GO:0005576; GO:0005635; GO:0005764; GO:0005783; GO:0005887; GO:0006486; GO:0007041; GO:0008203; GO:0008206; GO:0015485; GO:0030301; GO:0031902; GO:0032367; GO:0042632; GO:0048471; GO:1905103
TRINITY_DN993_c0_g2_i1 0 46 0 112 sp Q9XHS0 RS12_HORVU 49.6 137 62 1 77 466 1 137 4.8e-31 136 RS12_HORVU reviewed 40S ribosomal protein S12 RPS12 Hordeum vulgare (Barley) 143 translation [GO:0006412] ribosome [GO:0005840] ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005840; GO:0006412
TRINITY_DN4645_c1_g1_i6 0 54 0 105 sp B2X050 MNR1_CAPAN 27.6 308 167 11 82 864 9 307 1.3e-16 89 MNR1_CAPAN reviewed (+)-neomenthol dehydrogenase (EC 1.1.1.208) (Menthone:neomenthol reductase 1) (CaMNR1) MNR1 Capsicum annuum (Capsicum pepper) 314 defense response [GO:0006952] (+)-neomenthol dehydrogenase activity [GO:0047501]; defense response [GO:0006952] (+)-neomenthol dehydrogenase activity [GO:0047501] GO:0006952; GO:0047501
TRINITY_DN8884_c0_g1_i1 0 48 0 98 sp F4IMH3 NOC4_ARATH 25.1 514 292 19 294 1604 57 554 7.2e-21 104 NOC4_ARATH reviewed Protein NUCLEOLAR COMPLEX ASSOCIATED 4 (AtNoc4) (Protein EMBRYO DEFECTIVE 2762) NOC4 EMB2762 At2g17250 T23A1.11 Arabidopsis thaliana (Mouse-ear cress) 577 embryo development ending in seed dormancy [GO:0009793]; rRNA processing [GO:0006364] integral component of membrane [GO:0016021]; Noc4p-Nop14p complex [GO:0030692]; nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; small-subunit processome [GO:0032040] integral component of membrane [GO:0016021]; Noc4p-Nop14p complex [GO:0030692]; nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; small-subunit processome [GO:0032040]; embryo development ending in seed dormancy [GO:0009793]; rRNA processing [GO:0006364] GO:0005654; GO:0005730; GO:0006364; GO:0009793; GO:0016021; GO:0030692; GO:0031965; GO:0032040
TRINITY_DN4232_c0_g1_i14 0 106 0 181 sp P0DJ52 RL8_TETTS 72.8 136 37 0 7 414 117 252 1.1e-53 210.7 RL8_TETTS reviewed 60S ribosomal protein L8 RPL8 RPL2 TTHERM_00716240 Tetrahymena thermophila (strain SB210) 264 translation [GO:0006412] cytoplasm [GO:0005737]; ribosome [GO:0005840] cytoplasm [GO:0005737]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005737; GO:0005840; GO:0006412; GO:0019843
TRINITY_DN7130_c0_g1_i1 0 25 0 197 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN1447_c0_g1_i38 0 37 0 243 sp P33188 TBB1_PARTE 93.6 437 28 0 61 1371 1 437 6.7e-249 861.3 TBB1_PARTE reviewed Tubulin beta chain (Beta-tubulin) bPT2 GSPATT00021361001; bPT3 GSPATT00036831001 Paramecium tetraurelia 442 microtubule-based process [GO:0007017]; microtubule cytoskeleton organization [GO:0000226]; mitotic cell cycle [GO:0000278] cytoplasm [GO:0005737]; microtubule [GO:0005874] cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule cytoskeleton organization [GO:0000226]; microtubule-based process [GO:0007017]; mitotic cell cycle [GO:0000278] GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200] GO:0000226; GO:0000278; GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017
TRINITY_DN100883_c0_g1_i1 0 41 0 101 sp Q9UHR6 ZNHI2_HUMAN 57.9 38 15 1 64 177 18 54 6.5e-07 56.6 ZNHI2_HUMAN reviewed Zinc finger HIT domain-containing protein 2 (Protein FON) ZNHIT2 C11orf5 Homo sapiens (Human) 403 metal ion binding [GO:0046872] metal ion binding [GO:0046872] GO:0046872
TRINITY_DN2779_c0_g1_i9 82 490 48 276 sp Q9QX67 DAP1_RAT 35 117 55 4 105 437 1 102 3.9e-06 55.8 DAP1_RAT reviewed Death-associated protein 1 (DAP-1) (Rap7a) Dap Rap7a Rattus norvegicus (Rat) 102 activation of cysteine-type endopeptidase activity involved in apoptotic process [GO:0006919]; apoptotic process [GO:0006915]; apoptotic signaling pathway [GO:0097190]; autophagy [GO:0006914]; cellular response to amino acid starvation [GO:0034198]; negative regulation of autophagy [GO:0010507]; negative regulation of NF-kappaB transcription factor activity [GO:0032088]; negative regulation of transcription, DNA-templated [GO:0045892] death domain binding [GO:0070513]; activation of cysteine-type endopeptidase activity involved in apoptotic process [GO:0006919]; apoptotic process [GO:0006915]; apoptotic signaling pathway [GO:0097190]; autophagy [GO:0006914]; cellular response to amino acid starvation [GO:0034198]; negative regulation of autophagy [GO:0010507]; negative regulation of NF-kappaB transcription factor activity [GO:0032088]; negative regulation of transcription, DNA-templated [GO:0045892] death domain binding [GO:0070513] GO:0006914; GO:0006915; GO:0006919; GO:0010507; GO:0032088; GO:0034198; GO:0045892; GO:0070513; GO:0097190
TRINITY_DN3844_c0_g1_i13 99 0 163 0 sp Q95TJ9 CYCG_DROME 34.9 327 187 6 654 1604 239 549 1.1e-40 170.6 CYCG_DROME reviewed Cyclin G CycG CG11525 Drosophila melanogaster (Fruit fly) 566 cell division [GO:0051301]; double-strand break repair [GO:0006302]; epithelium development [GO:0060429]; female meiotic nuclear division [GO:0007143]; meiotic DNA repair synthesis [GO:0000711]; mitotic cell cycle phase transition [GO:0044772]; multicellular organism development [GO:0007275]; negative regulation of G1/S transition of mitotic cell cycle [GO:2000134]; negative regulation of Notch signaling pathway [GO:0045746]; positive regulation of growth [GO:0045927]; positive regulation of insulin receptor signaling pathway [GO:0046628]; positive regulation of protein kinase B signaling [GO:0051897]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079] cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; polytene chromosome [GO:0005700] cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; polytene chromosome [GO:0005700]; cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538]; DNA binding [GO:0003677]; protein phosphatase inhibitor activity [GO:0004864]; cell division [GO:0051301]; double-strand break repair [GO:0006302]; epithelium development [GO:0060429]; female meiotic nuclear division [GO:0007143]; meiotic DNA repair synthesis [GO:0000711]; mitotic cell cycle phase transition [GO:0044772]; multicellular organism development [GO:0007275]; negative regulation of G1/S transition of mitotic cell cycle [GO:2000134]; negative regulation of Notch signaling pathway [GO:0045746]; positive regulation of growth [GO:0045927]; positive regulation of insulin receptor signaling pathway [GO:0046628]; positive regulation of protein kinase B signaling [GO:0051897]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079] cyclin-dependent protein serine/threonine kinase regulator activity [GO:0016538]; DNA binding [GO:0003677]; protein phosphatase inhibitor activity [GO:0004864] GO:0000079; GO:0000307; GO:0000711; GO:0003677; GO:0004864; GO:0005634; GO:0005700; GO:0005737; GO:0006302; GO:0007143; GO:0007275; GO:0016538; GO:0044772; GO:0045746; GO:0045927; GO:0046628; GO:0051301; GO:0051897; GO:0060429; GO:2000134
TRINITY_DN1095_c0_g1_i4 0 58 0 63 sp Q2KIA4 SCD5_BOVIN 47.8 253 129 2 462 1217 79 329 3.9e-68 260.8 SCD5_BOVIN reviewed Stearoyl-CoA desaturase 5 (EC 1.14.19.1) (Acyl-CoA-desaturase 4) (Stearoyl-CoA 9-desaturase) SCD5 Bos taurus (Bovine) 335 unsaturated fatty acid biosynthetic process [GO:0006636] endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021] endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; stearoyl-CoA 9-desaturase activity [GO:0004768]; unsaturated fatty acid biosynthetic process [GO:0006636] iron ion binding [GO:0005506]; oxidoreductase activity [GO:0016491]; stearoyl-CoA 9-desaturase activity [GO:0004768] GO:0004768; GO:0005506; GO:0005789; GO:0006636; GO:0016021; GO:0016491
TRINITY_DN16395_c0_g1_i1 0 70 0 119 sp Q5A761 CCR4_CANAL 25 376 249 11 635 1735 429 780 3.9e-20 101.3 CCR4_CANAL reviewed CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr4 (EC 3.1.13.4) (Carbon catabolite repressor protein 4) (Cytoplasmic deadenylase) (Glucose-repressible alcohol dehydrogenase transcriptional effector) CCR4 CAALFM_C108220WA Ca41C10.13c CaO19.12567 CaO19.5101 Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast) 787 cellular response to starvation [GO:0009267]; filamentous growth [GO:0030447]; filamentous growth of a population of unicellular organisms in response to biotic stimulus [GO:0036180]; filamentous growth of a population of unicellular organisms in response to starvation [GO:0036170]; fungal-type cell wall biogenesis [GO:0009272]; nuclear-transcribed mRNA poly(A) tail shortening [GO:0000289]; pathogenesis [GO:0009405]; phospholipid homeostasis [GO:0055091] CCR4-NOT complex [GO:0030014]; cytoplasm [GO:0005737]; nucleus [GO:0005634] CCR4-NOT complex [GO:0030014]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; 3'-5'-exoribonuclease activity [GO:0000175]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723]; cellular response to starvation [GO:0009267]; filamentous growth [GO:0030447]; filamentous growth of a population of unicellular organisms in response to biotic stimulus [GO:0036180]; filamentous growth of a population of unicellular organisms in response to starvation [GO:0036170]; fungal-type cell wall biogenesis [GO:0009272]; nuclear-transcribed mRNA poly(A) tail shortening [GO:0000289]; pathogenesis [GO:0009405]; phospholipid homeostasis [GO:0055091] 3'-5'-exoribonuclease activity [GO:0000175]; metal ion binding [GO:0046872]; poly(A)-specific ribonuclease activity [GO:0004535]; RNA binding [GO:0003723] GO:0000175; GO:0000289; GO:0003723; GO:0004535; GO:0005634; GO:0005737; GO:0009267; GO:0009272; GO:0009405; GO:0030014; GO:0030447; GO:0036170; GO:0036180; GO:0046872; GO:0055091
TRINITY_DN682_c0_g1_i5 0 116 0 90 sp Q3V009 TMED1_MOUSE 35.8 193 121 2 132 710 33 222 1.5e-25 119.4 TMED1_MOUSE reviewed Transmembrane emp24 domain-containing protein 1 (Interleukin-1 receptor-like 1 ligand) (Putative T1/ST2 receptor-binding protein) (p24 family protein gamma-1) (p24gamma1) Tmed1 Il1rl1l Mus musculus (Mouse) 227 endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; Golgi organization [GO:0007030]; intracellular protein transport [GO:0006886] COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; Golgi organization [GO:0007030]; intracellular protein transport [GO:0006886] GO:0005783; GO:0005789; GO:0005793; GO:0005794; GO:0005886; GO:0006886; GO:0006888; GO:0007030; GO:0016021; GO:0030134; GO:0033116
TRINITY_DN1765_c0_g1_i2 0 143 0 177 sp P27484 GRP2_NICSY 55.9 59 25 1 1 177 20 77 1.1e-10 69.3 GRP2_NICSY reviewed Glycine-rich protein 2 GRP-2 Nicotiana sylvestris (Wood tobacco) (South American tobacco) 214 RNA binding [GO:0003723]; zinc ion binding [GO:0008270] RNA binding [GO:0003723]; zinc ion binding [GO:0008270] GO:0003723; GO:0008270
TRINITY_DN782_c0_g1_i11 0 48 0 68 sp Q9XGL4 RL31_CYAPA 55.5 119 52 1 48 401 1 119 5.8e-31 136 RL31_CYAPA reviewed 60S ribosomal protein L31 RPL31 Cyanophora paradoxa 119 translation [GO:0006412] ribosome [GO:0005840] ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005840; GO:0006412
TRINITY_DN793_c0_g1_i58 75 0 136 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN109346_c0_g1_i1 0 62 0 120 sp P34091 RL6_MESCR 48.8 164 78 3 94 570 72 234 6.7e-31 135.6 RL6_MESCR reviewed 60S ribosomal protein L6 (YL16-like) RPL6 Mesembryanthemum crystallinum (Common ice plant) (Cryophytum crystallinum) 234 translation [GO:0006412] ribosome [GO:0005840] ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005840; GO:0006412
TRINITY_DN1289_c0_g1_i5 153 0 116 0 sp P00522 ABL_DROME 55.5 884 285 15 292 2706 93 947 9.7e-250 866.3 ABL_DROME reviewed Tyrosine-protein kinase Abl (EC 2.7.10.2) (D-ash) (Protein abelson) Abl ABL-1 Dash CG4032 Drosophila melanogaster (Fruit fly) 1620 axis elongation [GO:0003401]; axon guidance [GO:0007411]; axon midline choice point recognition [GO:0016199]; axonogenesis [GO:0007409]; branchiomotor neuron axon guidance [GO:0021785]; central nervous system development [GO:0007417]; chemical synaptic transmission [GO:0007268]; compound eye development [GO:0048749]; cytoplasmic transport, nurse cell to oocyte [GO:0007303]; dendrite morphogenesis [GO:0048813]; dorsal closure [GO:0007391]; epithelial cell morphogenesis [GO:0003382]; learning or memory [GO:0007611]; motor neuron axon guidance [GO:0008045]; negative regulation of neuron projection development [GO:0010977]; negative regulation of synaptic growth at neuromuscular junction [GO:0045886]; neuron migration [GO:0001764]; peptidyl-tyrosine phosphorylation [GO:0018108]; photoreceptor cell axon guidance [GO:0072499]; positive regulation of lamellipodium assembly [GO:0010592]; positive regulation of protein export from nucleus [GO:0046827]; protein autophosphorylation [GO:0046777]; regulation of actin polymerization or depolymerization [GO:0008064]; regulation of cell shape [GO:0008360]; regulation of protein localization [GO:0032880]; regulation of protein stability [GO:0031647]; ventral cord development [GO:0007419]; ventral furrow formation [GO:0007370] apical cortex [GO:0045179]; axon [GO:0030424]; cell-cell junction [GO:0005911]; cell cortex [GO:0005938]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; extrinsic component of plasma membrane [GO:0019897]; muscle tendon junction [GO:0005927]; synapse [GO:0045202] apical cortex [GO:0045179]; axon [GO:0030424]; cell cortex [GO:0005938]; cell-cell junction [GO:0005911]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; extrinsic component of plasma membrane [GO:0019897]; muscle tendon junction [GO:0005927]; synapse [GO:0045202]; ATP binding [GO:0005524]; non-membrane spanning protein tyrosine kinase activity [GO:0004715]; protein tyrosine kinase activity [GO:0004713]; axis elongation [GO:0003401]; axon guidance [GO:0007411]; axon midline choice point recognition [GO:0016199]; axonogenesis [GO:0007409]; branchiomotor neuron axon guidance [GO:0021785]; central nervous system development [GO:0007417]; chemical synaptic transmission [GO:0007268]; compound eye development [GO:0048749]; cytoplasmic transport, nurse cell to oocyte [GO:0007303]; dendrite morphogenesis [GO:0048813]; dorsal closure [GO:0007391]; epithelial cell morphogenesis [GO:0003382]; learning or memory [GO:0007611]; motor neuron axon guidance [GO:0008045]; negative regulation of neuron projection development [GO:0010977]; negative regulation of synaptic growth at neuromuscular junction [GO:0045886]; neuron migration [GO:0001764]; peptidyl-tyrosine phosphorylation [GO:0018108]; photoreceptor cell axon guidance [GO:0072499]; positive regulation of lamellipodium assembly [GO:0010592]; positive regulation of protein export from nucleus [GO:0046827]; protein autophosphorylation [GO:0046777]; regulation of actin polymerization or depolymerization [GO:0008064]; regulation of cell shape [GO:0008360]; regulation of protein localization [GO:0032880]; regulation of protein stability [GO:0031647]; ventral cord development [GO:0007419]; ventral furrow formation [GO:0007370] ATP binding [GO:0005524]; non-membrane spanning protein tyrosine kinase activity [GO:0004715]; protein tyrosine kinase activity [GO:0004713] GO:0001764; GO:0003382; GO:0003401; GO:0004713; GO:0004715; GO:0005524; GO:0005737; GO:0005829; GO:0005911; GO:0005927; GO:0005938; GO:0007268; GO:0007303; GO:0007370; GO:0007391; GO:0007409; GO:0007411; GO:0007417; GO:0007419; GO:0007611; GO:0008045; GO:0008064; GO:0008360; GO:0010592; GO:0010977; GO:0016199; GO:0018108; GO:0019897; GO:0021785; GO:0030424; GO:0031647; GO:0032880; GO:0045179; GO:0045202; GO:0045886; GO:0046777; GO:0046827; GO:0048749; GO:0048813; GO:0072499
TRINITY_DN4645_c1_g1_i7 0 22 0 136 sp B2X050 MNR1_CAPAN 27 307 168 11 82 861 9 306 6.7e-16 86.7 MNR1_CAPAN reviewed (+)-neomenthol dehydrogenase (EC 1.1.1.208) (Menthone:neomenthol reductase 1) (CaMNR1) MNR1 Capsicum annuum (Capsicum pepper) 314 defense response [GO:0006952] (+)-neomenthol dehydrogenase activity [GO:0047501]; defense response [GO:0006952] (+)-neomenthol dehydrogenase activity [GO:0047501] GO:0006952; GO:0047501
TRINITY_DN1736_c0_g1_i7 0 27 0 122 sp Q8TDY2 RBCC1_HUMAN 38 92 50 2 282 545 1504 1592 2.6e-09 66.2 RBCC1_HUMAN reviewed RB1-inducible coiled-coil protein 1 (FAK family kinase-interacting protein of 200 kDa) (FIP200) RB1CC1 KIAA0203 RBICC Homo sapiens (Human) 1594 autophagosome assembly [GO:0000045]; autophagy [GO:0006914]; autophagy of mitochondrion [GO:0000422]; autophagy of peroxisome [GO:0030242]; cell cycle [GO:0007049]; glycophagy [GO:0061723]; heart development [GO:0007507]; liver development [GO:0001889]; macroautophagy [GO:0016236]; negative regulation of extrinsic apoptotic signaling pathway [GO:2001237]; piecemeal microautophagy of the nucleus [GO:0034727]; positive regulation of cell size [GO:0045793]; positive regulation of JNK cascade [GO:0046330]; positive regulation of protein phosphorylation [GO:0001934]; regulation of macroautophagy [GO:0016241]; reticulophagy [GO:0061709] Atg1/ULK1 kinase complex [GO:1990316]; cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; extrinsic component of membrane [GO:0019898]; lysosome [GO:0005764]; nuclear membrane [GO:0031965]; phagophore assembly site [GO:0000407]; phagophore assembly site membrane [GO:0034045] Atg1/ULK1 kinase complex [GO:1990316]; cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; extrinsic component of membrane [GO:0019898]; lysosome [GO:0005764]; nuclear membrane [GO:0031965]; phagophore assembly site [GO:0000407]; phagophore assembly site membrane [GO:0034045]; molecular adaptor activity [GO:0060090]; protein kinase binding [GO:0019901]; autophagosome assembly [GO:0000045]; autophagy [GO:0006914]; autophagy of mitochondrion [GO:0000422]; autophagy of peroxisome [GO:0030242]; cell cycle [GO:0007049]; glycophagy [GO:0061723]; heart development [GO:0007507]; liver development [GO:0001889]; macroautophagy [GO:0016236]; negative regulation of extrinsic apoptotic signaling pathway [GO:2001237]; piecemeal microautophagy of the nucleus [GO:0034727]; positive regulation of cell size [GO:0045793]; positive regulation of JNK cascade [GO:0046330]; positive regulation of protein phosphorylation [GO:0001934]; regulation of macroautophagy [GO:0016241]; reticulophagy [GO:0061709] molecular adaptor activity [GO:0060090]; protein kinase binding [GO:0019901] GO:0000045; GO:0000407; GO:0000422; GO:0001889; GO:0001934; GO:0005764; GO:0005789; GO:0005829; GO:0006914; GO:0007049; GO:0007507; GO:0016236; GO:0016241; GO:0019898; GO:0019901; GO:0030242; GO:0031965; GO:0034045; GO:0034727; GO:0045793; GO:0046330; GO:0060090; GO:0061709; GO:0061723; GO:1990316; GO:2001237
TRINITY_DN3295_c0_g1_i2 0 30 0 141 sp Q29116 TENA_PIG 33.2 575 248 13 1559 3217 161 621 1.7e-32 143.3 TENA_PIG reviewed Tenascin (TN) (Cytotactin) (GMEM) (GP 150-225) (Glioma-associated-extracellular matrix antigen) (Hexabrachion) (JI) (Myotendinous antigen) (Neuronectin) (P230) (Tenascin-C) (TN-C) TNC HXB Sus scrofa (Pig) 1746 cell adhesion [GO:0007155]; nervous system development [GO:0007399]; regulation of cell population proliferation [GO:0042127] collagen-containing extracellular matrix [GO:0062023]; extracellular space [GO:0005615] collagen-containing extracellular matrix [GO:0062023]; extracellular space [GO:0005615]; signaling receptor binding [GO:0005102]; cell adhesion [GO:0007155]; nervous system development [GO:0007399]; regulation of cell population proliferation [GO:0042127] signaling receptor binding [GO:0005102] GO:0005102; GO:0005615; GO:0007155; GO:0007399; GO:0042127; GO:0062023
TRINITY_DN88_c1_g1_i23 0 40 0 110 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN98858_c0_g1_i1 0 37 0 85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN6967_c0_g1_i3 64 0 126 0 sp P14562 LAMP1_RAT 29.7 229 129 7 307 978 206 407 9.1e-15 83.6 LAMP1_RAT reviewed Lysosome-associated membrane glycoprotein 1 (LAMP-1) (Lysosome-associated membrane protein 1) (120 kDa lysosomal membrane glycoprotein) (LGP-120) (CD107 antigen-like family member A) (CD antigen CD107a) Lamp1 Lamp-1 Rattus norvegicus (Rat) 407 autophagic cell death [GO:0048102]; establishment of protein localization to organelle [GO:0072594]; Golgi to lysosome transport [GO:0090160]; granzyme-mediated apoptotic signaling pathway [GO:0008626]; positive regulation of natural killer cell degranulation [GO:0043323]; positive regulation of natural killer cell mediated cytotoxicity [GO:0045954]; protein stabilization [GO:0050821]; regulation of organelle transport along microtubule [GO:1902513] alveolar lamellar body [GO:0097208]; autolysosome [GO:0044754]; cell surface [GO:0009986]; cytolytic granule [GO:0044194]; cytoplasm [GO:0005737]; cytoplasmic vesicle [GO:0031410]; cytosol [GO:0005829]; dendrite [GO:0030425]; endosome [GO:0005768]; endosome membrane [GO:0010008]; external side of plasma membrane [GO:0009897]; integral component of synaptic vesicle membrane [GO:0030285]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; lysosome [GO:0005764]; melanosome [GO:0042470]; multivesicular body [GO:0005771]; neuronal cell body [GO:0043025]; perinuclear region of cytoplasm [GO:0048471]; phagocytic vesicle [GO:0045335]; phagolysosome membrane [GO:0061474]; plasma membrane [GO:0005886]; sarcolemma [GO:0042383]; synaptic vesicle [GO:0008021]; vacuole [GO:0005773]; vesicle [GO:0031982] alveolar lamellar body [GO:0097208]; autolysosome [GO:0044754]; cell surface [GO:0009986]; cytolytic granule [GO:0044194]; cytoplasm [GO:0005737]; cytoplasmic vesicle [GO:0031410]; cytosol [GO:0005829]; dendrite [GO:0030425]; endosome [GO:0005768]; endosome membrane [GO:0010008]; external side of plasma membrane [GO:0009897]; integral component of synaptic vesicle membrane [GO:0030285]; late endosome [GO:0005770]; late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; lysosome [GO:0005764]; melanosome [GO:0042470]; multivesicular body [GO:0005771]; neuronal cell body [GO:0043025]; perinuclear region of cytoplasm [GO:0048471]; phagocytic vesicle [GO:0045335]; phagolysosome membrane [GO:0061474]; plasma membrane [GO:0005886]; sarcolemma [GO:0042383]; synaptic vesicle [GO:0008021]; vacuole [GO:0005773]; vesicle [GO:0031982]; enzyme binding [GO:0019899]; protein domain specific binding [GO:0019904]; autophagic cell death [GO:0048102]; establishment of protein localization to organelle [GO:0072594]; Golgi to lysosome transport [GO:0090160]; granzyme-mediated apoptotic signaling pathway [GO:0008626]; positive regulation of natural killer cell degranulation [GO:0043323]; positive regulation of natural killer cell mediated cytotoxicity [GO:0045954]; protein stabilization [GO:0050821]; regulation of organelle transport along microtubule [GO:1902513] enzyme binding [GO:0019899]; protein domain specific binding [GO:0019904] GO:0005737; GO:0005764; GO:0005765; GO:0005768; GO:0005770; GO:0005771; GO:0005773; GO:0005829; GO:0005886; GO:0008021; GO:0008626; GO:0009897; GO:0009986; GO:0010008; GO:0019899; GO:0019904; GO:0030285; GO:0030425; GO:0031410; GO:0031902; GO:0031982; GO:0042383; GO:0042470; GO:0043025; GO:0043323; GO:0044194; GO:0044754; GO:0045335; GO:0045954; GO:0048102; GO:0048471; GO:0050821; GO:0061474; GO:0072594; GO:0090160; GO:0097208; GO:1902513
TRINITY_DN140_c0_g1_i4 0 53 0 82 sp Q9SIP7 RS31_ARATH 78.3 217 47 0 62 712 4 220 8.1e-93 342.4 RS31_ARATH reviewed 40S ribosomal protein S3-1 RPS3A At2g31610 T9H9.13 Arabidopsis thaliana (Mouse-ear cress) 250 translation [GO:0006412] chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773] chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleus [GO:0005634]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735] GO:0003729; GO:0003735; GO:0005634; GO:0005773; GO:0005774; GO:0005777; GO:0005829; GO:0006412; GO:0009506; GO:0009507; GO:0022626; GO:0022627
TRINITY_DN16384_c0_g1_i1 0 62 0 149 sp Q8R2N2 UTP4_MOUSE 24.8 600 375 20 85 1773 8 568 7e-35 150.6 UTP4_MOUSE reviewed U3 small nucleolar RNA-associated protein 4 homolog (Cirhin) (Testis-expressed gene 292 protein) Utp4 Cirh1a Kiaa1988 Tex292 Mus musculus (Mouse) 686 maturation of SSU-rRNA [GO:0030490]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; regulation of transcription, DNA-templated [GO:0006355] 90S preribosome [GO:0030686]; chromosome [GO:0005694]; fibrillar center [GO:0001650]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; t-UTP complex [GO:0034455] 90S preribosome [GO:0030686]; chromosome [GO:0005694]; fibrillar center [GO:0001650]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; t-UTP complex [GO:0034455]; maturation of SSU-rRNA [GO:0030490]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; regulation of transcription, DNA-templated [GO:0006355] GO:0000462; GO:0001650; GO:0005694; GO:0005730; GO:0006355; GO:0030490; GO:0030686; GO:0032040; GO:0034455
TRINITY_DN2038_c0_g1_i25 0 40 0 241 sp Q98SJ2 DAZP1_XENLA 44 84 40 2 76 309 114 196 3.1e-11 71.2 DAZP1_XENLA reviewed DAZ-associated protein 1 (Deleted in azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) dazap1 prrp Xenopus laevis (African clawed frog) 360 multicellular organism development [GO:0007275]; oogenesis [GO:0048477] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; multicellular organism development [GO:0007275]; oogenesis [GO:0048477] mRNA binding [GO:0003729]; RNA binding [GO:0003723] GO:0003723; GO:0003729; GO:0005737; GO:0007275; GO:0048477
TRINITY_DN7881_c1_g1_i5 219 0 60 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN2365_c0_g1_i12 0 61 0 108 sp P12532 KCRU_HUMAN 50.8 372 163 5 180 1292 52 404 7.5e-102 372.9 KCRU_HUMAN reviewed Creatine kinase U-type, mitochondrial (EC 2.7.3.2) (Acidic-type mitochondrial creatine kinase) (Mia-CK) (Ubiquitous mitochondrial creatine kinase) (U-MtCK) CKMT1A CKMT; CKMT1B CKMT Homo sapiens (Human) 417 creatine metabolic process [GO:0006600]; phosphocreatine biosynthetic process [GO:0046314] mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739] mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; creatine kinase activity [GO:0004111]; kinase activity [GO:0016301]; creatine metabolic process [GO:0006600]; phosphocreatine biosynthetic process [GO:0046314] ATP binding [GO:0005524]; creatine kinase activity [GO:0004111]; kinase activity [GO:0016301] GO:0004111; GO:0005524; GO:0005739; GO:0005743; GO:0006600; GO:0016301; GO:0046314
TRINITY_DN644_c0_g1_i2 0 46 0 98 sp P98158 LRP2_RAT 27.6 185 110 7 509 1054 2787 2950 1e-06 57.4 LRP2_RAT reviewed Low-density lipoprotein receptor-related protein 2 (LRP-2) (Glycoprotein 330) (gp330) (Megalin) Lrp2 Rattus norvegicus (Rat) 4660 aging [GO:0007568]; amyloid-beta clearance [GO:0097242]; animal organ regeneration [GO:0031100]; aorta development [GO:0035904]; cell population proliferation [GO:0008283]; cellular response to growth factor stimulus [GO:0071363]; chemoattraction of axon [GO:0061642]; coronary artery morphogenesis [GO:0060982]; coronary vasculature development [GO:0060976]; endocytic hemoglobin import into cell [GO:0020028]; endocytosis [GO:0006897]; endosomal transport [GO:0016197]; folate import across plasma membrane [GO:1904447]; forebrain development [GO:0030900]; heart development [GO:0007507]; hormone secretion [GO:0046879]; male gonad development [GO:0008584]; metal ion transport [GO:0030001]; negative regulation of apoptotic process [GO:0043066]; negative regulation of BMP signaling pathway [GO:0030514]; negative regulation of endopeptidase activity [GO:0010951]; neural tube closure [GO:0001843]; neuron projection arborization [GO:0140058]; outflow tract septum morphogenesis [GO:0003148]; positive regulation of endocytosis [GO:0045807]; positive regulation of lipoprotein transport [GO:0140077]; positive regulation of neurogenesis [GO:0050769]; positive regulation of oligodendrocyte progenitor proliferation [GO:0070447]; positive regulation of protein kinase B signaling [GO:0051897]; protein transport [GO:0015031]; pulmonary artery morphogenesis [GO:0061156]; receptor-mediated endocytosis [GO:0006898]; response to drug [GO:0042493]; response to leptin [GO:0044321]; response to retinoic acid [GO:0032526]; response to vitamin D [GO:0033280]; response to X-ray [GO:0010165]; secondary heart field specification [GO:0003139]; sensory perception of sound [GO:0007605]; transcytosis [GO:0045056]; vagina development [GO:0060068]; ventricular compact myocardium morphogenesis [GO:0003223]; ventricular septum development [GO:0003281]; vitamin metabolic process [GO:0006766] apical part of cell [GO:0045177]; apical plasma membrane [GO:0016324]; axon [GO:0030424]; axonal growth cone [GO:0044295]; brush border [GO:0005903]; brush border membrane [GO:0031526]; cell surface [GO:0009986]; clathrin-coated pit [GO:0005905]; cytoplasm [GO:0005737]; dendrite [GO:0030425]; endocytic vesicle [GO:0030139]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; endosome lumen [GO:0031904]; external side of plasma membrane [GO:0009897]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; membrane raft [GO:0045121]; plasma membrane [GO:0005886]; protein-containing complex [GO:0032991]; receptor complex [GO:0043235] apical part of cell [GO:0045177]; apical plasma membrane [GO:0016324]; axon [GO:0030424]; axonal growth cone [GO:0044295]; brush border [GO:0005903]; brush border membrane [GO:0031526]; cell surface [GO:0009986]; clathrin-coated pit [GO:0005905]; cytoplasm [GO:0005737]; dendrite [GO:0030425]; endocytic vesicle [GO:0030139]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; endosome lumen [GO:0031904]; external side of plasma membrane [GO:0009897]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; membrane raft [GO:0045121]; plasma membrane [GO:0005886]; protein-containing complex [GO:0032991]; receptor complex [GO:0043235]; calcium ion binding [GO:0005509]; chaperone binding [GO:0051087]; drug binding [GO:0008144]; hemoglobin binding [GO:0030492]; hormone binding [GO:0042562]; insulin-like growth factor I binding [GO:0031994]; low-density lipoprotein particle receptor binding [GO:0050750]; PDZ domain binding [GO:0030165]; protein transporter activity [GO:0140318]; protein-containing complex binding [GO:0044877]; SH3 domain binding [GO:0017124]; signaling receptor activity [GO:0038023]; steroid hormone receptor binding [GO:0035258]; aging [GO:0007568]; amyloid-beta clearance [GO:0097242]; animal organ regeneration [GO:0031100]; aorta development [GO:0035904]; cell population proliferation [GO:0008283]; cellular response to growth factor stimulus [GO:0071363]; chemoattraction of axon [GO:0061642]; coronary artery morphogenesis [GO:0060982]; coronary vasculature development [GO:0060976]; endocytic hemoglobin import into cell [GO:0020028]; endocytosis [GO:0006897]; endosomal transport [GO:0016197]; folate import across plasma membrane [GO:1904447]; forebrain development [GO:0030900]; heart development [GO:0007507]; hormone secretion [GO:0046879]; male gonad development [GO:0008584]; metal ion transport [GO:0030001]; negative regulation of apoptotic process [GO:0043066]; negative regulation of BMP signaling pathway [GO:0030514]; negative regulation of endopeptidase activity [GO:0010951]; neural tube closure [GO:0001843]; neuron projection arborization [GO:0140058]; outflow tract septum morphogenesis [GO:0003148]; positive regulation of endocytosis [GO:0045807]; positive regulation of lipoprotein transport [GO:0140077]; positive regulation of neurogenesis [GO:0050769]; positive regulation of oligodendrocyte progenitor proliferation [GO:0070447]; positive regulation of protein kinase B signaling [GO:0051897]; protein transport [GO:0015031]; pulmonary artery morphogenesis [GO:0061156]; receptor-mediated endocytosis [GO:0006898]; response to drug [GO:0042493]; response to leptin [GO:0044321]; response to retinoic acid [GO:0032526]; response to vitamin D [GO:0033280]; response to X-ray [GO:0010165]; secondary heart field specification [GO:0003139]; sensory perception of sound [GO:0007605]; transcytosis [GO:0045056]; vagina development [GO:0060068]; ventricular compact myocardium morphogenesis [GO:0003223]; ventricular septum development [GO:0003281]; vitamin metabolic process [GO:0006766] calcium ion binding [GO:0005509]; chaperone binding [GO:0051087]; drug binding [GO:0008144]; hemoglobin binding [GO:0030492]; hormone binding [GO:0042562]; insulin-like growth factor I binding [GO:0031994]; low-density lipoprotein particle receptor binding [GO:0050750]; PDZ domain binding [GO:0030165]; protein-containing complex binding [GO:0044877]; protein transporter activity [GO:0140318]; SH3 domain binding [GO:0017124]; signaling receptor activity [GO:0038023]; steroid hormone receptor binding [GO:0035258] GO:0001843; GO:0003139; GO:0003148; GO:0003223; GO:0003281; GO:0005509; GO:0005615; GO:0005737; GO:0005768; GO:0005783; GO:0005794; GO:0005886; GO:0005903; GO:0005905; GO:0006766; GO:0006897; GO:0006898; GO:0007507; GO:0007568; GO:0007605; GO:0008144; GO:0008283; GO:0008584; GO:0009897; GO:0009986; GO:0010165; GO:0010951; GO:0015031; GO:0016020; GO:0016021; GO:0016197; GO:0016324; GO:0017124; GO:0020028; GO:0030001; GO:0030139; GO:0030165; GO:0030424; GO:0030425; GO:0030492; GO:0030514; GO:0030900; GO:0031100; GO:0031526; GO:0031904; GO:0031994; GO:0032526; GO:0032991; GO:0033280; GO:0035258; GO:0035904; GO:0038023; GO:0042493; GO:0042562; GO:0043066; GO:0043235; GO:0044295; GO:0044321; GO:0044877; GO:0045056; GO:0045121; GO:0045177; GO:0045807; GO:0046879; GO:0050750; GO:0050769; GO:0051087; GO:0051897; GO:0060068; GO:0060976; GO:0060982; GO:0061156; GO:0061642; GO:0070447; GO:0071363; GO:0097242; GO:0140058; GO:0140077; GO:0140318; GO:1904447
TRINITY_DN104797_c0_g1_i1 0 70 0 69 sp Q9CAX6 RS142_ARATH 84 150 24 0 50 499 1 150 8.3e-67 255 RS142_ARATH reviewed 40S ribosomal protein S14-2 RPS14B At3g11510 F24K9.19 Arabidopsis thaliana (Mouse-ear cress) 150 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; polysomal ribosome [GO:0042788] cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; polysomal ribosome [GO:0042788]; mRNA 5'-UTR binding [GO:0048027]; mRNA binding [GO:0003729]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] mRNA 5'-UTR binding [GO:0048027]; mRNA binding [GO:0003729]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735] GO:0000028; GO:0000462; GO:0003729; GO:0003735; GO:0005730; GO:0005829; GO:0006412; GO:0022626; GO:0022627; GO:0042788; GO:0048027; GO:0070181
TRINITY_DN493_c0_g1_i14 0 59 0 158 sp P35684 RL3_ORYSJ 68.2 380 117 3 2 1132 10 388 4.3e-151 535.8 RL3_ORYSJ reviewed 60S ribosomal protein L3 RPL3 Os12g0167900 LOC_Os12g07010 Oryza sativa subsp. japonica (Rice) 389 ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625] cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0000027; GO:0003723; GO:0003735; GO:0006412; GO:0022625
TRINITY_DN7721_c0_g2_i1 0 39 0 87 sp Q5I0G4 GARS_RAT 45.2 633 326 8 106 1986 96 713 1e-155 552 GARS_RAT reviewed Glycine--tRNA ligase (EC 6.1.1.14) (Diadenosine tetraphosphate synthetase) (Ap4A synthetase) (EC 2.7.7.-) (Glycyl-tRNA synthetase) (GlyRS) (Glycyl-tRNA synthetase 1) Gars1 Gars Rattus norvegicus (Rat) 728 diadenosine tetraphosphate biosynthetic process [GO:0015966]; glycyl-tRNA aminoacylation [GO:0006426]; mitochondrial glycyl-tRNA aminoacylation [GO:0070150]; tRNA aminoacylation for protein translation [GO:0006418] axon [GO:0030424]; cytoplasm [GO:0005737]; extracellular exosome [GO:0070062]; mitochondrion [GO:0005739]; secretory granule [GO:0030141] axon [GO:0030424]; cytoplasm [GO:0005737]; extracellular exosome [GO:0070062]; mitochondrion [GO:0005739]; secretory granule [GO:0030141]; ATP binding [GO:0005524]; bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity [GO:0004081]; glycine-tRNA ligase activity [GO:0004820]; identical protein binding [GO:0042802]; protein dimerization activity [GO:0046983]; transferase activity [GO:0016740]; diadenosine tetraphosphate biosynthetic process [GO:0015966]; glycyl-tRNA aminoacylation [GO:0006426]; mitochondrial glycyl-tRNA aminoacylation [GO:0070150]; tRNA aminoacylation for protein translation [GO:0006418] ATP binding [GO:0005524]; bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity [GO:0004081]; glycine-tRNA ligase activity [GO:0004820]; identical protein binding [GO:0042802]; protein dimerization activity [GO:0046983]; transferase activity [GO:0016740] GO:0004081; GO:0004820; GO:0005524; GO:0005737; GO:0005739; GO:0006418; GO:0006426; GO:0015966; GO:0016740; GO:0030141; GO:0030424; GO:0042802; GO:0046983; GO:0070062; GO:0070150
TRINITY_DN8494_c0_g1_i19 0 56 0 148 sp F4ISQ7 TOP3B_ARATH 43.7 535 259 16 676 2211 3 518 1e-105 386.3 TOP3B_ARATH reviewed DNA topoisomerase 3-beta (EC 5.6.2.1) At2g32000 F22D22.25 Arabidopsis thaliana (Mouse-ear cress) 865 DNA topological change [GO:0006265] nucleus [GO:0005634] nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA topoisomerase activity [GO:0003916]; DNA topoisomerase type I (single strand cut, ATP-independent) activity [GO:0003917]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; DNA topological change [GO:0006265] DNA binding [GO:0003677]; DNA topoisomerase activity [GO:0003916]; DNA topoisomerase type I (single strand cut, ATP-independent) activity [GO:0003917]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729] GO:0003677; GO:0003729; GO:0003916; GO:0003917; GO:0005634; GO:0006265; GO:0046872
TRINITY_DN1545_c0_g1_i7 0 55 0 111 sp P26182 ACT_ACHBI 89.4 369 39 0 49 1155 1 369 2.2e-194 679.5 ACT_ACHBI reviewed Actin Achlya bisexualis (Water mold) 376 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856] cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; ATP binding [GO:0005524] ATP binding [GO:0005524] GO:0005524; GO:0005737; GO:0005856
TRINITY_DN18468_c0_g1_i2 0 41 0 109 sp O74835 RRP5_SCHPO 27.6 1917 1070 56 30 5531 5 1686 1.7e-123 446.4 RRP5_SCHPO reviewed rRNA biogenesis protein rrp5 (Ribosomal RNA-processing protein 5) (U3 small nucleolar RNA-associated protein rrp5) (U3 snoRNA-associated protein rrp5) rrp5 SPCC1183.07 Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 1690 mRNA processing [GO:0006397]; rRNA processing [GO:0006364] nucleolus [GO:0005730]; small-subunit processome [GO:0032040] nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; RNA binding [GO:0003723]; rRNA primary transcript binding [GO:0042134]; snoRNA binding [GO:0030515]; mRNA processing [GO:0006397]; rRNA processing [GO:0006364] RNA binding [GO:0003723]; rRNA primary transcript binding [GO:0042134]; snoRNA binding [GO:0030515] GO:0003723; GO:0005730; GO:0006364; GO:0006397; GO:0030515; GO:0032040; GO:0042134
TRINITY_DN35867_c0_g1_i9 0 83 0 185 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN11234_c0_g1_i6 0 25 0 149 sp Q8VYF1 RL152_ARATH 66.2 204 69 0 42 653 1 204 4.8e-72 272.7 RL152_ARATH reviewed 60S ribosomal protein L15-2 RPL15B At4g17390 dl4730c FCAALL.32 Arabidopsis thaliana (Mouse-ear cress) 204 cytoplasmic translation [GO:0002181] cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730] cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181] mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003723; GO:0003729; GO:0003735; GO:0005730; GO:0005829; GO:0022625
TRINITY_DN6283_c0_g1_i7 0 79 0 147 sp Q6GQN8 MECR_DANRE 24.4 287 196 8 99 941 48 319 2.6e-11 71.6 MECR_DANRE reviewed Enoyl-[acyl-carrier-protein] reductase, mitochondrial (EC 1.3.1.104) (2-enoyl thioester reductase) mecr zgc:110153 Danio rerio (Zebrafish) (Brachydanio rerio) 377 fatty acid biosynthetic process [GO:0006633]; fatty acid metabolic process [GO:0006631] mitochondrion [GO:0005739] mitochondrion [GO:0005739]; trans-2-enoyl-CoA reductase (NADPH) activity [GO:0019166]; fatty acid biosynthetic process [GO:0006633]; fatty acid metabolic process [GO:0006631] trans-2-enoyl-CoA reductase (NADPH) activity [GO:0019166] GO:0005739; GO:0006631; GO:0006633; GO:0019166
TRINITY_DN4655_c0_g1_i16 13 226 442 1027 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN16432_c0_g1_i25 0 43 0 110 sp Q6PFJ1 NGDN_DANRE 23.2 250 163 6 22 699 12 256 3e-08 61.2 NGDN_DANRE reviewed Neuroguidin (EIF4E-binding protein) ngdn zgc:66416 Danio rerio (Zebrafish) (Brachydanio rerio) 315 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; regulation of translation [GO:0006417] cytoplasm [GO:0005737]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040] cytoplasm [GO:0005737]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; regulation of translation [GO:0006417] GO:0000462; GO:0005730; GO:0005737; GO:0006417; GO:0032040
TRINITY_DN38_c0_g3_i1 0 33 0 90 sp P42867 GPT_MOUSE 43.8 432 205 7 135 1412 11 410 2.9e-92 341.3 GPT_MOUSE reviewed UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase (EC 2.7.8.15) (GlcNAc-1-P transferase) (G1PT) (GPT) (N-acetylglucosamine-1-phosphate transferase) Dpagt1 Dpagt2 Gnpta Mus musculus (Mouse) 410 dolichol-linked oligosaccharide biosynthetic process [GO:0006488]; dolichol metabolic process [GO:0019348]; dolichyl diphosphate biosynthetic process [GO:0006489]; protein N-linked glycosylation [GO:0006487]; UDP-N-acetylglucosamine metabolic process [GO:0006047] endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020] endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; membrane [GO:0016020]; metal ion binding [GO:0046872]; phospho-N-acetylmuramoyl-pentapeptide-transferase activity [GO:0008963]; transferase activity, transferring glycosyl groups [GO:0016757]; UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity [GO:0003975]; UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity [GO:0003976]; dolichol metabolic process [GO:0019348]; dolichol-linked oligosaccharide biosynthetic process [GO:0006488]; dolichyl diphosphate biosynthetic process [GO:0006489]; protein N-linked glycosylation [GO:0006487]; UDP-N-acetylglucosamine metabolic process [GO:0006047] metal ion binding [GO:0046872]; phospho-N-acetylmuramoyl-pentapeptide-transferase activity [GO:0008963]; transferase activity, transferring glycosyl groups [GO:0016757]; UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity [GO:0003975]; UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity [GO:0003976] GO:0003975; GO:0003976; GO:0005789; GO:0006047; GO:0006487; GO:0006488; GO:0006489; GO:0008963; GO:0016020; GO:0016021; GO:0016757; GO:0019348; GO:0043231; GO:0046872
TRINITY_DN3377_c0_g1_i6 920 142 1259 63 sp P53634 CATC_HUMAN 50 456 218 4 2481 3821 7 461 1.5e-136 489.6 CATC_HUMAN reviewed Dipeptidyl peptidase 1 (EC 3.4.14.1) (Cathepsin C) (Cathepsin J) (Dipeptidyl peptidase I) (DPP-I) (DPPI) (Dipeptidyl transferase) [Cleaved into: Dipeptidyl peptidase 1 exclusion domain chain (Dipeptidyl peptidase I exclusion domain chain); Dipeptidyl peptidase 1 heavy chain (Dipeptidyl peptidase I heavy chain); Dipeptidyl peptidase 1 light chain (Dipeptidyl peptidase I light chain)] CTSC CPPI Homo sapiens (Human) 463 aging [GO:0007568]; COPII vesicle coating [GO:0048208]; endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; immune response [GO:0006955]; negative regulation of myelination [GO:0031642]; neutrophil degranulation [GO:0043312]; positive regulation of apoptotic signaling pathway [GO:2001235]; positive regulation of microglial cell activation [GO:1903980]; positive regulation of proteolysis involved in cellular protein catabolic process [GO:1903052]; proteolysis [GO:0006508]; proteolysis involved in cellular protein catabolic process [GO:0051603]; response to organic substance [GO:0010033]; T cell mediated cytotoxicity [GO:0001913] azurophil granule lumen [GO:0035578]; centrosome [GO:0005813]; collagen-containing extracellular matrix [GO:0062023]; COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; endoplasmic reticulum lumen [GO:0005788]; extracellular exosome [GO:0070062]; extracellular region [GO:0005576]; extracellular space [GO:0005615]; Golgi membrane [GO:0000139]; intracellular membrane-bounded organelle [GO:0043231]; lysosome [GO:0005764]; membrane [GO:0016020]; nucleoplasm [GO:0005654] azurophil granule lumen [GO:0035578]; centrosome [GO:0005813]; collagen-containing extracellular matrix [GO:0062023]; COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum lumen [GO:0005788]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; extracellular exosome [GO:0070062]; extracellular region [GO:0005576]; extracellular space [GO:0005615]; Golgi membrane [GO:0000139]; intracellular membrane-bounded organelle [GO:0043231]; lysosome [GO:0005764]; membrane [GO:0016020]; nucleoplasm [GO:0005654]; chaperone binding [GO:0051087]; chloride ion binding [GO:0031404]; cysteine-type endopeptidase activity [GO:0004197]; cysteine-type peptidase activity [GO:0008234]; identical protein binding [GO:0042802]; peptidase activator activity involved in apoptotic process [GO:0016505]; phosphatase binding [GO:0019902]; protein self-association [GO:0043621]; serine-type endopeptidase activity [GO:0004252]; aging [GO:0007568]; COPII vesicle coating [GO:0048208]; endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; immune response [GO:0006955]; negative regulation of myelination [GO:0031642]; neutrophil degranulation [GO:0043312]; positive regulation of apoptotic signaling pathway [GO:2001235]; positive regulation of microglial cell activation [GO:1903980]; positive regulation of proteolysis involved in cellular protein catabolic process [GO:1903052]; proteolysis [GO:0006508]; proteolysis involved in cellular protein catabolic process [GO:0051603]; response to organic substance [GO:0010033]; T cell mediated cytotoxicity [GO:0001913] chaperone binding [GO:0051087]; chloride ion binding [GO:0031404]; cysteine-type endopeptidase activity [GO:0004197]; cysteine-type peptidase activity [GO:0008234]; identical protein binding [GO:0042802]; peptidase activator activity involved in apoptotic process [GO:0016505]; phosphatase binding [GO:0019902]; protein self-association [GO:0043621]; serine-type endopeptidase activity [GO:0004252] GO:0000139; GO:0001913; GO:0004197; GO:0004252; GO:0005576; GO:0005615; GO:0005654; GO:0005764; GO:0005788; GO:0005813; GO:0006508; GO:0006888; GO:0006955; GO:0007568; GO:0008234; GO:0010033; GO:0016020; GO:0016505; GO:0019902; GO:0030134; GO:0031404; GO:0031642; GO:0033116; GO:0035578; GO:0042802; GO:0043231; GO:0043312; GO:0043621; GO:0048208; GO:0051087; GO:0051603; GO:0062023; GO:0070062; GO:1903052; GO:1903980; GO:2001235
TRINITY_DN679_c6_g1_i2 0 58 0 56 sp D3YTS9 PPAT_MOUSE 26.7 378 202 13 17 1042 16 354 1.2e-19 99.4 PPAT_MOUSE reviewed Testicular acid phosphatase (EC 3.1.3.2) (Acid phosphatase 4) Acp4 Acpt Mus musculus (Mouse) 425 negative regulation of ERBB4 signaling pathway [GO:0120154]; negative regulation of neuron projection development [GO:0010977]; negative regulation of protein processing [GO:0010955]; odontogenesis [GO:0042476]; peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity [GO:1990264]; regulation of neuronal synaptic plasticity [GO:0048168] integral component of membrane [GO:0016021]; postsynaptic membrane [GO:0045211] integral component of membrane [GO:0016021]; postsynaptic membrane [GO:0045211]; acid phosphatase activity [GO:0003993]; protein tyrosine phosphatase activity [GO:0004725]; receptor tyrosine kinase binding [GO:0030971]; negative regulation of ERBB4 signaling pathway [GO:0120154]; negative regulation of neuron projection development [GO:0010977]; negative regulation of protein processing [GO:0010955]; odontogenesis [GO:0042476]; peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity [GO:1990264]; regulation of neuronal synaptic plasticity [GO:0048168] acid phosphatase activity [GO:0003993]; protein tyrosine phosphatase activity [GO:0004725]; receptor tyrosine kinase binding [GO:0030971] GO:0003993; GO:0004725; GO:0010955; GO:0010977; GO:0016021; GO:0030971; GO:0042476; GO:0045211; GO:0048168; GO:0120154; GO:1990264
TRINITY_DN5809_c0_g1_i74 0 30 0 154 sp C0HLB2 VKT_PSEPC 48.3 58 30 0 244 417 7 64 2e-13 77.8 VKT_PSEPC reviewed Kunitz-type serine protease inhibitor PPTI (Pseudocerastes persicus trypsin inhibitor) (PPTI) Pseudocerastes persicus (Persian horned viper) (False horned viper) 68 extracellular region [GO:0005576] extracellular region [GO:0005576]; serine-type endopeptidase inhibitor activity [GO:0004867]; toxin activity [GO:0090729] serine-type endopeptidase inhibitor activity [GO:0004867]; toxin activity [GO:0090729] GO:0004867; GO:0005576; GO:0090729
TRINITY_DN3835_c2_g1_i9 23 107 0 192 sp P89116 CASP1_SPOFR 41.4 278 154 4 253 1074 24 296 9.6e-54 214.2 CASP1_SPOFR reviewed Caspase-1 (EC 3.4.22.-) [Cleaved into: Caspase-1 subunit p19/18; Caspase-1 subunit p12] Spodoptera frugiperda (Fall armyworm) 299 apoptotic process [GO:0006915] cysteine-type endopeptidase activity [GO:0004197]; apoptotic process [GO:0006915] cysteine-type endopeptidase activity [GO:0004197] GO:0004197; GO:0006915
TRINITY_DN3356_c0_g1_i12 0 33 0 103 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN993_c0_g1_i16 0 35 0 105 sp Q9XHS0 RS12_HORVU 49.6 137 62 1 49 438 1 137 2.4e-30 133.7 RS12_HORVU reviewed 40S ribosomal protein S12 RPS12 Hordeum vulgare (Barley) 143 translation [GO:0006412] ribosome [GO:0005840] ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005840; GO:0006412
TRINITY_DN287_c0_g1_i14 83 0 58 0 sp Q9BYW2 SETD2_HUMAN 48.6 370 163 5 210 1289 1476 1828 9.1e-100 367.5 SETD2_HUMAN reviewed Histone-lysine N-methyltransferase SETD2 (EC 2.1.1.359) (HIF-1) (Huntingtin yeast partner B) (Huntingtin-interacting protein 1) (HIP-1) (Huntingtin-interacting protein B) (Lysine N-methyltransferase 3A) (Protein-lysine N-methyltransferase SETD2) (EC 2.1.1.-) (SET domain-containing protein 2) (hSET2) (p231HBP) SETD2 HIF1 HYPB KIAA1732 KMT3A SET2 HSPC069 Homo sapiens (Human) 2564 angiogenesis [GO:0001525]; cell migration involved in vasculogenesis [GO:0035441]; coronary vasculature morphogenesis [GO:0060977]; defense response to virus [GO:0051607]; embryonic cranial skeleton morphogenesis [GO:0048701]; embryonic placenta morphogenesis [GO:0060669]; endodermal cell differentiation [GO:0035987]; forebrain development [GO:0030900]; histone H3-K36 dimethylation [GO:0097676]; histone H3-K36 trimethylation [GO:0097198]; mesoderm morphogenesis [GO:0048332]; microtubule cytoskeleton organization involved in mitosis [GO:1902850]; mismatch repair [GO:0006298]; morphogenesis of a branching structure [GO:0001763]; neural tube closure [GO:0001843]; nucleosome organization [GO:0034728]; peptidyl-lysine monomethylation [GO:0018026]; peptidyl-lysine trimethylation [GO:0018023]; pericardium development [GO:0060039]; positive regulation of interferon-alpha production [GO:0032727]; regulation of cytokinesis [GO:0032465]; regulation of double-strand break repair via homologous recombination [GO:0010569]; regulation of mRNA export from nucleus [GO:0010793]; regulation of protein localization to chromatin [GO:1905634]; regulation of transcription, DNA-templated [GO:0006355]; response to type I interferon [GO:0034340]; stem cell development [GO:0048864]; stem cell differentiation [GO:0048863]; transcription elongation from RNA polymerase II promoter [GO:0006368]; viral process [GO:0016032] chromosome [GO:0005694]; nucleoplasm [GO:0005654]; nucleus [GO:0005634] chromosome [GO:0005694]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; alpha-tubulin binding [GO:0043014]; histone methyltransferase activity (H3-K36 specific) [GO:0046975]; histone-lysine N-methyltransferase activity [GO:0018024]; metal ion binding [GO:0046872]; protein-lysine N-methyltransferase activity [GO:0016279]; angiogenesis [GO:0001525]; cell migration involved in vasculogenesis [GO:0035441]; coronary vasculature morphogenesis [GO:0060977]; defense response to virus [GO:0051607]; embryonic cranial skeleton morphogenesis [GO:0048701]; embryonic placenta morphogenesis [GO:0060669]; endodermal cell differentiation [GO:0035987]; forebrain development [GO:0030900]; histone H3-K36 dimethylation [GO:0097676]; histone H3-K36 trimethylation [GO:0097198]; mesoderm morphogenesis [GO:0048332]; microtubule cytoskeleton organization involved in mitosis [GO:1902850]; mismatch repair [GO:0006298]; morphogenesis of a branching structure [GO:0001763]; neural tube closure [GO:0001843]; nucleosome organization [GO:0034728]; peptidyl-lysine monomethylation [GO:0018026]; peptidyl-lysine trimethylation [GO:0018023]; pericardium development [GO:0060039]; positive regulation of interferon-alpha production [GO:0032727]; regulation of cytokinesis [GO:0032465]; regulation of double-strand break repair via homologous recombination [GO:0010569]; regulation of mRNA export from nucleus [GO:0010793]; regulation of protein localization to chromatin [GO:1905634]; regulation of transcription, DNA-templated [GO:0006355]; response to type I interferon [GO:0034340]; stem cell development [GO:0048864]; stem cell differentiation [GO:0048863]; transcription elongation from RNA polymerase II promoter [GO:0006368]; viral process [GO:0016032] alpha-tubulin binding [GO:0043014]; histone-lysine N-methyltransferase activity [GO:0018024]; histone methyltransferase activity (H3-K36 specific) [GO:0046975]; metal ion binding [GO:0046872]; protein-lysine N-methyltransferase activity [GO:0016279] GO:0001525; GO:0001763; GO:0001843; GO:0005634; GO:0005654; GO:0005694; GO:0006298; GO:0006355; GO:0006368; GO:0010569; GO:0010793; GO:0016032; GO:0016279; GO:0018023; GO:0018024; GO:0018026; GO:0030900; GO:0032465; GO:0032727; GO:0034340; GO:0034728; GO:0035441; GO:0035987; GO:0043014; GO:0046872; GO:0046975; GO:0048332; GO:0048701; GO:0048863; GO:0048864; GO:0051607; GO:0060039; GO:0060669; GO:0060977; GO:0097198; GO:0097676; GO:1902850; GO:1905634
TRINITY_DN173_c0_g1_i4 0 105 0 43 sp P31007 DLG1_DROME 60.9 778 238 12 155 2323 204 970 2.6e-251 870.9 DLG1_DROME reviewed Disks large 1 tumor suppressor protein dlg1 l(1)dlg1 CG1725 Drosophila melanogaster (Fruit fly) 970 anterior/posterior axis specification, follicular epithelium [GO:0030714]; asymmetric protein localization involved in cell fate determination [GO:0045167]; basal protein localization [GO:0045175]; behavioral response to ethanol [GO:0048149]; cell-cell adhesion [GO:0098609]; cell fate commitment involved in pattern specification [GO:0060581]; cell fate specification [GO:0001708]; chemical synaptic transmission [GO:0007268]; dorsal closure [GO:0007391]; establishment of mitotic spindle orientation [GO:0000132]; establishment of spindle orientation [GO:0051294]; establishment or maintenance of epithelial cell apical/basal polarity [GO:0045197]; establishment or maintenance of polarity of follicular epithelium [GO:0016334]; establishment or maintenance of polarity of larval imaginal disc epithelium [GO:0016336]; gravitaxis [GO:0042332]; locomotor rhythm [GO:0045475]; male courtship behavior [GO:0008049]; mating behavior [GO:0007617]; morphogenesis of a polarized epithelium [GO:0001738]; morphogenesis of follicular epithelium [GO:0016333]; morphogenesis of larval imaginal disc epithelium [GO:0016335]; negative regulation of imaginal disc growth [GO:0045571]; nervous system development [GO:0007399]; ovarian follicle cell development [GO:0030707]; pole plasm protein localization [GO:0007318]; positive phototaxis [GO:0046956]; positive regulation of synaptic growth at neuromuscular junction [GO:0045887]; protein localization [GO:0008104]; receptor clustering [GO:0043113]; receptor localization to synapse [GO:0097120]; regulation of epidermal growth factor receptor signaling pathway [GO:0042058]; septate junction assembly [GO:0019991]; signal transduction [GO:0007165]; synaptic growth at neuromuscular junction [GO:0051124] apical cortex [GO:0045179]; apicolateral plasma membrane [GO:0016327]; basolateral plasma membrane [GO:0016323]; cell cortex [GO:0005938]; cell junction [GO:0030054]; cytoskeleton [GO:0005856]; lateral plasma membrane [GO:0016328]; leading edge membrane [GO:0031256]; neuromuscular junction [GO:0031594]; neuron projection [GO:0043005]; perinuclear region of cytoplasm [GO:0048471]; plasma membrane [GO:0005886]; postsynaptic density membrane [GO:0098839]; postsynaptic membrane [GO:0045211]; septate junction [GO:0005918]; smooth septate junction [GO:0005920]; subsynaptic reticulum [GO:0071212]; synapse [GO:0045202]; terminal bouton [GO:0043195]; tricellular tight junction [GO:0061689]; type Ib terminal bouton [GO:0061176]; type I terminal bouton [GO:0061174] apical cortex [GO:0045179]; apicolateral plasma membrane [GO:0016327]; basolateral plasma membrane [GO:0016323]; cell cortex [GO:0005938]; cell junction [GO:0030054]; cytoskeleton [GO:0005856]; lateral plasma membrane [GO:0016328]; leading edge membrane [GO:0031256]; neuromuscular junction [GO:0031594]; neuron projection [GO:0043005]; perinuclear region of cytoplasm [GO:0048471]; plasma membrane [GO:0005886]; postsynaptic density membrane [GO:0098839]; postsynaptic membrane [GO:0045211]; septate junction [GO:0005918]; smooth septate junction [GO:0005920]; subsynaptic reticulum [GO:0071212]; synapse [GO:0045202]; terminal bouton [GO:0043195]; tricellular tight junction [GO:0061689]; type I terminal bouton [GO:0061174]; type Ib terminal bouton [GO:0061176]; guanylate kinase activity [GO:0004385]; anterior/posterior axis specification, follicular epithelium [GO:0030714]; asymmetric protein localization involved in cell fate determination [GO:0045167]; basal protein localization [GO:0045175]; behavioral response to ethanol [GO:0048149]; cell fate commitment involved in pattern specification [GO:0060581]; cell fate specification [GO:0001708]; cell-cell adhesion [GO:0098609]; chemical synaptic transmission [GO:0007268]; dorsal closure [GO:0007391]; establishment of mitotic spindle orientation [GO:0000132]; establishment of spindle orientation [GO:0051294]; establishment or maintenance of epithelial cell apical/basal polarity [GO:0045197]; establishment or maintenance of polarity of follicular epithelium [GO:0016334]; establishment or maintenance of polarity of larval imaginal disc epithelium [GO:0016336]; gravitaxis [GO:0042332]; locomotor rhythm [GO:0045475]; male courtship behavior [GO:0008049]; mating behavior [GO:0007617]; morphogenesis of a polarized epithelium [GO:0001738]; morphogenesis of follicular epithelium [GO:0016333]; morphogenesis of larval imaginal disc epithelium [GO:0016335]; negative regulation of imaginal disc growth [GO:0045571]; nervous system development [GO:0007399]; ovarian follicle cell development [GO:0030707]; pole plasm protein localization [GO:0007318]; positive phototaxis [GO:0046956]; positive regulation of synaptic growth at neuromuscular junction [GO:0045887]; protein localization [GO:0008104]; receptor clustering [GO:0043113]; receptor localization to synapse [GO:0097120]; regulation of epidermal growth factor receptor signaling pathway [GO:0042058]; septate junction assembly [GO:0019991]; signal transduction [GO:0007165]; synaptic growth at neuromuscular junction [GO:0051124] guanylate kinase activity [GO:0004385] GO:0000132; GO:0001708; GO:0001738; GO:0004385; GO:0005856; GO:0005886; GO:0005918; GO:0005920; GO:0005938; GO:0007165; GO:0007268; GO:0007318; GO:0007391; GO:0007399; GO:0007617; GO:0008049; GO:0008104; GO:0016323; GO:0016327; GO:0016328; GO:0016333; GO:0016334; GO:0016335; GO:0016336; GO:0019991; GO:0030054; GO:0030707; GO:0030714; GO:0031256; GO:0031594; GO:0042058; GO:0042332; GO:0043005; GO:0043113; GO:0043195; GO:0045167; GO:0045175; GO:0045179; GO:0045197; GO:0045202; GO:0045211; GO:0045475; GO:0045571; GO:0045887; GO:0046956; GO:0048149; GO:0048471; GO:0051124; GO:0051294; GO:0060581; GO:0061174; GO:0061176; GO:0061689; GO:0071212; GO:0097120; GO:0098609; GO:0098839
TRINITY_DN16015_c0_g1_i1 0 54 0 107 sp Q74GM3 COXX_GEOSL 35.7 143 85 3 466 885 7 145 1.1e-12 75.9 COXX_GEOSL reviewed Protoheme IX farnesyltransferase (EC 2.5.1.141) (Heme B farnesyltransferase) (Heme O synthase) ctaB GSU0223 Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) 270 cellular respiration [GO:0045333]; heme biosynthetic process [GO:0006783]; heme O biosynthetic process [GO:0048034] integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; farnesyltranstransferase activity [GO:0004311]; protoheme IX farnesyltransferase activity [GO:0008495]; cellular respiration [GO:0045333]; heme biosynthetic process [GO:0006783]; heme O biosynthetic process [GO:0048034] farnesyltranstransferase activity [GO:0004311]; protoheme IX farnesyltransferase activity [GO:0008495] GO:0004311; GO:0005886; GO:0006783; GO:0008495; GO:0016021; GO:0045333; GO:0048034
TRINITY_DN10746_c0_g1_i2 0 64 0 151 sp Q15024 EXOS7_HUMAN 29.8 285 152 12 128 889 4 271 6.3e-19 96.7 EXOS7_HUMAN reviewed Exosome complex component RRP42 (Exosome component 7) (Ribosomal RNA-processing protein 42) (p8) EXOSC7 KIAA0116 RRP42 Homo sapiens (Human) 291 exonucleolytic catabolism of deadenylated mRNA [GO:0043928]; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000467]; nuclear mRNA surveillance [GO:0071028]; nuclear polyadenylation-dependent mRNA catabolic process [GO:0071042]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; nuclear polyadenylation-dependent tRNA catabolic process [GO:0071038]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; regulation of mRNA stability [GO:0043488]; RNA catabolic process [GO:0006401]; rRNA catabolic process [GO:0016075]; rRNA processing [GO:0006364]; U1 snRNA 3'-end processing [GO:0034473]; U4 snRNA 3'-end processing [GO:0034475]; U5 snRNA 3'-end processing [GO:0034476] cytoplasmic exosome (RNase complex) [GO:0000177]; cytosol [GO:0005829]; exosome (RNase complex) [GO:0000178]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654] cytoplasmic exosome (RNase complex) [GO:0000177]; cytosol [GO:0005829]; exosome (RNase complex) [GO:0000178]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; 3'-5'-exoribonuclease activity [GO:0000175]; AU-rich element binding [GO:0017091]; RNA binding [GO:0003723]; exonucleolytic catabolism of deadenylated mRNA [GO:0043928]; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000467]; nuclear mRNA surveillance [GO:0071028]; nuclear polyadenylation-dependent mRNA catabolic process [GO:0071042]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; nuclear polyadenylation-dependent tRNA catabolic process [GO:0071038]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; regulation of mRNA stability [GO:0043488]; RNA catabolic process [GO:0006401]; rRNA catabolic process [GO:0016075]; rRNA processing [GO:0006364]; U1 snRNA 3'-end processing [GO:0034473]; U4 snRNA 3'-end processing [GO:0034475]; U5 snRNA 3'-end processing [GO:0034476] 3'-5'-exoribonuclease activity [GO:0000175]; AU-rich element binding [GO:0017091]; RNA binding [GO:0003723] GO:0000175; GO:0000176; GO:0000177; GO:0000178; GO:0000467; GO:0003723; GO:0005654; GO:0005730; GO:0005829; GO:0006364; GO:0006401; GO:0016075; GO:0017091; GO:0034427; GO:0034473; GO:0034475; GO:0034476; GO:0043488; GO:0043928; GO:0071028; GO:0071035; GO:0071038; GO:0071042
TRINITY_DN98568_c3_g1_i1 19843 7902 15612 6331 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN2990_c0_g1_i7 0 23 0 111 sp P56286 IF2A_SCHPO 47.8 276 140 3 65 886 4 277 7.7e-65 249.6 IF2A_SCHPO reviewed Eukaryotic translation initiation factor 2 subunit alpha (eIF-2-alpha) tif211 SPAC3G9.09c Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 306 cytoplasmic translational initiation [GO:0002183]; mitotic G1 DNA damage checkpoint [GO:0031571] cytosol [GO:0005829]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 2B complex [GO:0005851]; eukaryotic translation initiation factor 2 complex [GO:0005850]; multi-eIF complex [GO:0043614] cytosol [GO:0005829]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 2 complex [GO:0005850]; eukaryotic translation initiation factor 2B complex [GO:0005851]; multi-eIF complex [GO:0043614]; ribosome binding [GO:0043022]; RNA binding [GO:0003723]; translation initiation factor activity [GO:0003743]; cytoplasmic translational initiation [GO:0002183]; mitotic G1 DNA damage checkpoint [GO:0031571] ribosome binding [GO:0043022]; RNA binding [GO:0003723]; translation initiation factor activity [GO:0003743] GO:0002183; GO:0003723; GO:0003743; GO:0005829; GO:0005850; GO:0005851; GO:0031571; GO:0033290; GO:0043022; GO:0043614
TRINITY_DN9446_c0_g1_i1 0 41 0 152 sp Q921I9 EXOS4_MOUSE 35.9 217 135 2 37 675 1 217 9.5e-30 132.1 EXOS4_MOUSE reviewed Exosome complex component RRP41 (Exosome component 4) (Ribosomal RNA-processing protein 41) Exosc4 Rrp41 Mus musculus (Mouse) 245 defense response to virus [GO:0051607]; DNA deamination [GO:0045006]; histone mRNA catabolic process [GO:0071044]; maturation of 5.8S rRNA [GO:0000460]; nuclear mRNA surveillance [GO:0071028]; nuclear-transcribed mRNA catabolic process [GO:0000956]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; polyadenylation-dependent snoRNA 3'-end processing [GO:0071051]; positive regulation of cell growth [GO:0030307]; rRNA catabolic process [GO:0016075]; U4 snRNA 3'-end processing [GO:0034475] cytoplasm [GO:0005737]; cytoplasmic exosome (RNase complex) [GO:0000177]; cytosol [GO:0005829]; exosome (RNase complex) [GO:0000178]; intermediate filament cytoskeleton [GO:0045111]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; nucleus [GO:0005634]; transcriptionally active chromatin [GO:0035327] cytoplasm [GO:0005737]; cytoplasmic exosome (RNase complex) [GO:0000177]; cytosol [GO:0005829]; exosome (RNase complex) [GO:0000178]; intermediate filament cytoskeleton [GO:0045111]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; nucleus [GO:0005634]; transcriptionally active chromatin [GO:0035327]; mRNA 3'-UTR AU-rich region binding [GO:0035925]; defense response to virus [GO:0051607]; DNA deamination [GO:0045006]; histone mRNA catabolic process [GO:0071044]; maturation of 5.8S rRNA [GO:0000460]; nuclear mRNA surveillance [GO:0071028]; nuclear-transcribed mRNA catabolic process [GO:0000956]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; polyadenylation-dependent snoRNA 3'-end processing [GO:0071051]; positive regulation of cell growth [GO:0030307]; rRNA catabolic process [GO:0016075]; U4 snRNA 3'-end processing [GO:0034475] mRNA 3'-UTR AU-rich region binding [GO:0035925] GO:0000176; GO:0000177; GO:0000178; GO:0000460; GO:0000956; GO:0005634; GO:0005730; GO:0005737; GO:0005829; GO:0016075; GO:0030307; GO:0034427; GO:0034475; GO:0035327; GO:0035925; GO:0045006; GO:0045111; GO:0051607; GO:0071028; GO:0071044; GO:0071051
TRINITY_DN117103_c0_g1_i1 0 46 0 75 sp P0CQ45 REXO4_CRYNB 44.5 200 105 3 170 757 133 330 2.8e-35 150.6 REXO4_CRYNB reviewed RNA exonuclease 4 (EC 3.1.-.-) REX4 CNBC1480 Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (Filobasidiella neoformans) 408 rRNA processing [GO:0006364] nucleus [GO:0005634] nucleus [GO:0005634]; 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676]; rRNA processing [GO:0006364] 3'-5' exonuclease activity [GO:0008408]; nucleic acid binding [GO:0003676] GO:0003676; GO:0005634; GO:0006364; GO:0008408
TRINITY_DN5797_c0_g1_i11 0 28 0 137 sp P29980 CPXN_NOSS1 28.2 220 139 7 958 1605 251 455 6.8e-15 84 CPXN_NOSS1 reviewed Probable cytochrome P450 110 (EC 1.14.-.-) cyp110 alr1450 Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) 459 nitrogen fixation [GO:0009399] heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]; nitrogen fixation [GO:0009399] heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705] GO:0004497; GO:0005506; GO:0009399; GO:0016705; GO:0020037
TRINITY_DN6598_c0_g1_i1 71 930 90 1309 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN9183_c0_g1_i1 0 76 0 201 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN2394_c1_g1_i6 0 130 0 191 sp Q8LC68 NRP2_ARATH 23.9 222 147 5 52 663 9 226 7.5e-18 93.2 NRP2_ARATH reviewed NAP1-related protein 2 (Nucleosome/chromatin assembly factor group A5) (Protein SET homolog 2) NRP2 NFA5 At1g18800 F6A14.10 Arabidopsis thaliana (Mouse-ear cress) 255 double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444] chromatin binding [GO:0003682]; histone binding [GO:0042393] GO:0000724; GO:0003682; GO:0005634; GO:0005737; GO:0005829; GO:0006334; GO:0016444; GO:0042393
TRINITY_DN12630_c0_g1_i1 0 39 0 94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN2002_c0_g1_i2 0 33 0 92 sp P09622 DLDH_HUMAN 60.2 470 182 4 162 1568 43 508 1.2e-152 541.6 DLDH_HUMAN reviewed Dihydrolipoyl dehydrogenase, mitochondrial (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) DLD GCSL LAD PHE3 Homo sapiens (Human) 509 2-oxoglutarate metabolic process [GO:0006103]; aging [GO:0007568]; branched-chain amino acid catabolic process [GO:0009083]; cell redox homeostasis [GO:0045454]; dihydrolipoamide metabolic process [GO:0051068]; gastrulation [GO:0007369]; histone succinylation [GO:0106077]; lipoate metabolic process [GO:0009106]; lysine catabolic process [GO:0006554]; mitochondrial acetyl-CoA biosynthetic process from pyruvate [GO:0061732]; mitochondrial electron transport, NADH to ubiquinone [GO:0006120]; oxidation-reduction process [GO:0055114]; proteolysis [GO:0006508]; pyruvate metabolic process [GO:0006090]; regulation of membrane potential [GO:0042391]; sperm capacitation [GO:0048240]; tricarboxylic acid cycle [GO:0006099] acrosomal matrix [GO:0043159]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; motile cilium [GO:0031514]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; oxoglutarate dehydrogenase complex [GO:0045252]; pyruvate dehydrogenase complex [GO:0045254] acrosomal matrix [GO:0043159]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; motile cilium [GO:0031514]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; oxoglutarate dehydrogenase complex [GO:0045252]; pyruvate dehydrogenase complex [GO:0045254]; dihydrolipoyl dehydrogenase activity [GO:0004148]; flavin adenine dinucleotide binding [GO:0050660]; lipoamide binding [GO:0043544]; NAD binding [GO:0051287]; 2-oxoglutarate metabolic process [GO:0006103]; aging [GO:0007568]; branched-chain amino acid catabolic process [GO:0009083]; cell redox homeostasis [GO:0045454]; dihydrolipoamide metabolic process [GO:0051068]; gastrulation [GO:0007369]; histone succinylation [GO:0106077]; lipoate metabolic process [GO:0009106]; lysine catabolic process [GO:0006554]; mitochondrial acetyl-CoA biosynthetic process from pyruvate [GO:0061732]; mitochondrial electron transport, NADH to ubiquinone [GO:0006120]; oxidation-reduction process [GO:0055114]; proteolysis [GO:0006508]; pyruvate metabolic process [GO:0006090]; regulation of membrane potential [GO:0042391]; sperm capacitation [GO:0048240]; tricarboxylic acid cycle [GO:0006099] dihydrolipoyl dehydrogenase activity [GO:0004148]; flavin adenine dinucleotide binding [GO:0050660]; lipoamide binding [GO:0043544]; NAD binding [GO:0051287] GO:0004148; GO:0005634; GO:0005654; GO:0005739; GO:0005759; GO:0006090; GO:0006099; GO:0006103; GO:0006120; GO:0006508; GO:0006554; GO:0007369; GO:0007568; GO:0009083; GO:0009106; GO:0031514; GO:0042391; GO:0043159; GO:0043544; GO:0045252; GO:0045254; GO:0045454; GO:0048240; GO:0050660; GO:0051068; GO:0051287; GO:0055114; GO:0061732; GO:0106077
TRINITY_DN13033_c0_g1_i5 0 102 0 26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN752_c0_g1_i5 0 22 0 113 sp Q9AAV6 KPRS_CAUVC 48.3 319 155 5 119 1075 3 311 5.4e-72 273.1 KPRS_CAUVC reviewed Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase) prs CC_0487 Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus) 312 5-phosphoribose 1-diphosphate biosynthetic process [GO:0006015]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165]; ribonucleoside monophosphate biosynthetic process [GO:0009156] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; ribose phosphate diphosphokinase activity [GO:0004749]; 5-phosphoribose 1-diphosphate biosynthetic process [GO:0006015]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165]; ribonucleoside monophosphate biosynthetic process [GO:0009156] ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; ribose phosphate diphosphokinase activity [GO:0004749] GO:0000287; GO:0004749; GO:0005524; GO:0005737; GO:0006015; GO:0009116; GO:0009156; GO:0009165; GO:0016301
TRINITY_DN565_c1_g1_i2 0 122 0 34 sp Q8Q0U0 Y045_METMA 37.5 120 65 3 428 763 206 323 2.2e-10 68.2 Y045_METMA reviewed Putative ankyrin repeat protein MM_0045 MM_0045 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia) 360
TRINITY_DN8308_c0_g1_i1 0 75 0 44 sp Q9P2Q2 FRM4A_HUMAN 44.4 550 261 6 288 1934 15 520 1.5e-110 403.3 FRM4A_HUMAN reviewed FERM domain-containing protein 4A FRMD4A FRMD4 KIAA1294 Homo sapiens (Human) 1039 establishment of epithelial cell polarity [GO:0090162]; negative regulation of protein secretion [GO:0050709]; positive regulation of protein secretion [GO:0050714] adherens junction [GO:0005912]; bicellular tight junction [GO:0005923]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856] adherens junction [GO:0005912]; bicellular tight junction [GO:0005923]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; protein-macromolecule adaptor activity [GO:0030674]; establishment of epithelial cell polarity [GO:0090162]; negative regulation of protein secretion [GO:0050709]; positive regulation of protein secretion [GO:0050714] protein-macromolecule adaptor activity [GO:0030674] GO:0005737; GO:0005856; GO:0005912; GO:0005923; GO:0030674; GO:0050709; GO:0050714; GO:0090162
TRINITY_DN3032_c0_g1_i1 0 41 0 140 sp Q3EDF8 PPR28_ARATH 24.5 343 237 11 141 1103 207 549 2.8e-17 91.7 PPR28_ARATH reviewed Pentatricopeptide repeat-containing protein At1g09900 At1g09900 F21M12.38 Arabidopsis thaliana (Mouse-ear cress) 598
TRINITY_DN3970_c0_g1_i9 0 42 0 109 sp P30182 TOP2_ARATH 46.1 1203 570 15 36 3542 32 1190 1.3e-291 1005 TOP2_ARATH reviewed DNA topoisomerase 2 (EC 5.6.2.2) (DNA topoisomerase II) TOP2 At3g23890 F14O13.7 Arabidopsis thaliana (Mouse-ear cress) 1473 DNA topological change [GO:0006265]; mitotic DNA integrity checkpoint [GO:0044774]; resolution of meiotic recombination intermediates [GO:0000712]; sister chromatid segregation [GO:0000819] nucleus [GO:0005634] nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase activity [GO:0003916]; DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [GO:0003918]; metal ion binding [GO:0046872]; DNA topological change [GO:0006265]; mitotic DNA integrity checkpoint [GO:0044774]; resolution of meiotic recombination intermediates [GO:0000712]; sister chromatid segregation [GO:0000819] ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA topoisomerase activity [GO:0003916]; DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [GO:0003918]; metal ion binding [GO:0046872] GO:0000712; GO:0000819; GO:0003677; GO:0003916; GO:0003918; GO:0005524; GO:0005634; GO:0006265; GO:0044774; GO:0046872
TRINITY_DN15504_c0_g1_i1 203 0 76 0 sp Q9VZI3 UN112_DROME 58.8 716 249 15 546 2591 4 707 4.1e-231 802.7 UN112_DROME reviewed Unc-112-related protein (Fermitin-1) Fit1 CG14991 Drosophila melanogaster (Fruit fly) 708 cardiac muscle tissue development [GO:0048738]; cell-matrix adhesion [GO:0007160]; defense response to Gram-negative bacterium [GO:0050829]; integrin-mediated signaling pathway [GO:0007229] cell-substrate junction [GO:0030055]; cytoplasm [GO:0005737] cell-substrate junction [GO:0030055]; cytoplasm [GO:0005737]; cell adhesion molecule binding [GO:0050839]; integrin binding [GO:0005178]; cardiac muscle tissue development [GO:0048738]; cell-matrix adhesion [GO:0007160]; defense response to Gram-negative bacterium [GO:0050829]; integrin-mediated signaling pathway [GO:0007229] cell adhesion molecule binding [GO:0050839]; integrin binding [GO:0005178] GO:0005178; GO:0005737; GO:0007160; GO:0007229; GO:0030055; GO:0048738; GO:0050829; GO:0050839
TRINITY_DN17340_c0_g1_i18 0 38 0 99 sp P16100 IDH_AZOVI 57.7 737 298 5 150 2339 5 734 6.6e-243 842 IDH_AZOVI reviewed Isocitrate dehydrogenase [NADP] (IDH) (EC 1.1.1.42) (Oxalosuccinate decarboxylase) icd Azotobacter vinelandii 741 glyoxylate cycle [GO:0006097]; tricarboxylic acid cycle [GO:0006099] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; isocitrate dehydrogenase (NADP+) activity [GO:0004450]; metal ion binding [GO:0046872]; glyoxylate cycle [GO:0006097]; tricarboxylic acid cycle [GO:0006099] isocitrate dehydrogenase (NADP+) activity [GO:0004450]; metal ion binding [GO:0046872] GO:0004450; GO:0005737; GO:0006097; GO:0006099; GO:0046872
TRINITY_DN17556_c0_g1_i1 0 31 0 154 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN2569_c0_g1_i4 0 20 0 117 sp A6SFG0 CLU_BOTFB 26 131 97 0 2420 2812 997 1127 1.2e-06 57.8 CLU_BOTFB reviewed Clustered mitochondria protein homolog (Protein TIF31 homolog) clu1 tif31 BC1G_11770 Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea) 1306 intracellular distribution of mitochondria [GO:0048312] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; intracellular distribution of mitochondria [GO:0048312] GO:0005737; GO:0048312
TRINITY_DN3547_c1_g1_i3 0 59 0 216 sp P09189 HSP7C_PETHY 75.3 89 22 0 2 268 39 127 3e-33 142.1 HSP7C_PETHY reviewed Heat shock cognate 70 kDa protein HSP70 Petunia hybrida (Petunia) 651 ATP binding [GO:0005524] ATP binding [GO:0005524] GO:0005524
TRINITY_DN90_c1_g1_i4 0 30 0 94 sp Q9LT78 RD21C_ARATH 41.9 313 163 8 148 1062 43 344 1.8e-59 231.5 RD21C_ARATH reviewed Probable cysteine protease RD21C (EC 3.4.22.-) RD21C At3g19390 MLD14.12 Arabidopsis thaliana (Mouse-ear cress) 452 proteolysis involved in cellular protein catabolic process [GO:0051603] extracellular space [GO:0005615]; lysosome [GO:0005764] extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] cysteine-type endopeptidase activity [GO:0004197] GO:0004197; GO:0005615; GO:0005764; GO:0051603
TRINITY_DN108273_c0_g1_i1 0 52 0 86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN9055_c5_g1_i18 2984 1391 2976 676 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN7393_c0_g1_i1 0 51 0 113 sp O80725 AB4B_ARATH 25.4 461 331 8 373 1725 161 618 8.9e-35 150.2 AB4B_ARATH reviewed ABC transporter B family member 4 (ABC transporter ABCB.4) (AtABCB4) (Multidrug resistance protein 4) (P-glycoprotein 4) ABCB4 MDR4 PGP4 At2g47000 F14M4.17 Arabidopsis thaliana (Mouse-ear cress) 1286 auxin-activated signaling pathway [GO:0009734]; auxin efflux [GO:0010315]; auxin influx [GO:0060919]; auxin polar transport [GO:0009926]; basipetal auxin transport [GO:0010540]; gravitropism [GO:0009630]; response to auxin [GO:0009733]; response to cytokinin [GO:0009735]; root hair elongation [GO:0048767]; transmembrane transport [GO:0055085] cytosol [GO:0005829]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506] cytosol [GO:0005829]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; ATPase-coupled transmembrane transporter activity [GO:0042626]; ATPase-coupled xenobiotic transmembrane transporter activity [GO:0008559]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin influx transmembrane transporter activity [GO:0010328]; auxin efflux [GO:0010315]; auxin influx [GO:0060919]; auxin polar transport [GO:0009926]; auxin-activated signaling pathway [GO:0009734]; basipetal auxin transport [GO:0010540]; gravitropism [GO:0009630]; response to auxin [GO:0009733]; response to cytokinin [GO:0009735]; root hair elongation [GO:0048767]; transmembrane transport [GO:0055085] ATPase activity [GO:0016887]; ATPase-coupled transmembrane transporter activity [GO:0042626]; ATPase-coupled xenobiotic transmembrane transporter activity [GO:0008559]; ATP binding [GO:0005524]; auxin efflux transmembrane transporter activity [GO:0010329]; auxin influx transmembrane transporter activity [GO:0010328] GO:0005524; GO:0005829; GO:0005886; GO:0008559; GO:0009506; GO:0009630; GO:0009733; GO:0009734; GO:0009735; GO:0009926; GO:0010315; GO:0010328; GO:0010329; GO:0010540; GO:0016020; GO:0016021; GO:0016887; GO:0042626; GO:0048767; GO:0055085; GO:0060919
TRINITY_DN779_c0_g1_i22 0 63 0 96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN7332_c0_g1_i4 0 57 0 69 sp Q96FW1 OTUB1_HUMAN 37.6 266 150 8 64 843 14 269 5.9e-43 176.4 OTUB1_HUMAN reviewed Ubiquitin thioesterase OTUB1 (EC 3.4.19.12) (Deubiquitinating enzyme OTUB1) (OTU domain-containing ubiquitin aldehyde-binding protein 1) (Otubain-1) (hOTU1) (Ubiquitin-specific-processing protease OTUB1) OTUB1 OTB1 OTU1 HSPC263 Homo sapiens (Human) 271 adaptive immune response [GO:0002250]; cellular response to DNA damage stimulus [GO:0006974]; cellular response to interleukin-1 [GO:0071347]; DNA repair [GO:0006281]; negative regulation of double-strand break repair [GO:2000780]; negative regulation of histone H2A K63-linked ubiquitination [GO:1901315]; protein deubiquitination [GO:0016579]; protein K48-linked deubiquitination [GO:0071108] cytosol [GO:0005829]; extracellular exosome [GO:0070062]; nucleoplasm [GO:0005654]; nucleus [GO:0005634] cytosol [GO:0005829]; extracellular exosome [GO:0070062]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; NEDD8-specific protease activity [GO:0019784]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; ubiquitin binding [GO:0043130]; ubiquitin protein ligase binding [GO:0031625]; adaptive immune response [GO:0002250]; cellular response to DNA damage stimulus [GO:0006974]; cellular response to interleukin-1 [GO:0071347]; DNA repair [GO:0006281]; negative regulation of double-strand break repair [GO:2000780]; negative regulation of histone H2A K63-linked ubiquitination [GO:1901315]; protein deubiquitination [GO:0016579]; protein K48-linked deubiquitination [GO:0071108] NEDD8-specific protease activity [GO:0019784]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; ubiquitin binding [GO:0043130]; ubiquitin protein ligase binding [GO:0031625] GO:0002250; GO:0004843; GO:0005634; GO:0005654; GO:0005829; GO:0006281; GO:0006974; GO:0016579; GO:0019784; GO:0031625; GO:0043130; GO:0070062; GO:0071108; GO:0071347; GO:1901315; GO:2000780
TRINITY_DN726_c0_g1_i4 0 136 0 168 sp P18445 RL27A_RAT 62.2 148 55 1 39 479 1 148 3e-48 193 RL27A_RAT reviewed 60S ribosomal protein L27a Rpl27a Rattus norvegicus (Rat) 148 translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0006412; GO:0022625; GO:0022626
TRINITY_DN4320_c2_g1_i8 108 0 126 10 sp P98083 SHC1_MOUSE 41.1 492 216 10 1097 2509 139 577 1.8e-85 319.3 SHC1_MOUSE reviewed SHC-transforming protein 1 (SHC-transforming protein A) (Src homology 2 domain-containing-transforming protein C1) (SH2 domain protein C1) Shc1 Shc ShcA Mus musculus (Mouse) 579 actin cytoskeleton organization [GO:0030036]; actin cytoskeleton reorganization [GO:0031532]; activation of MAPK activity [GO:0000187]; aging [GO:0007568]; angiogenesis [GO:0001525]; cell-cell adhesion [GO:0098609]; cellular response to growth factor stimulus [GO:0071363]; defense response to bacterium [GO:0042742]; epidermal growth factor receptor signaling pathway [GO:0007173]; heart development [GO:0007507]; insulin receptor signaling pathway [GO:0008286]; MAPK cascade [GO:0000165]; negative regulation of angiogenesis [GO:0016525]; negative regulation of apoptotic process [GO:0043066]; negative regulation of transcription, DNA-templated [GO:0045892]; neuron differentiation [GO:0030182]; neuron projection development [GO:0031175]; positive regulation of cell population proliferation [GO:0008284]; positive regulation of cell proliferation in bone marrow [GO:0071864]; positive regulation of ERK1 and ERK2 cascade [GO:0070374]; positive regulation of MAPK cascade [GO:0043410]; positive regulation of smooth muscle cell proliferation [GO:0048661]; positive regulation of transcription, DNA-templated [GO:0045893]; positive regulation of vasoconstriction [GO:0045907]; regulation of cell population proliferation [GO:0042127]; regulation of growth [GO:0040008]; regulation of smooth muscle contraction [GO:0006940]; regulation of superoxide metabolic process [GO:0090322]; response to endothelin [GO:1990839]; transmembrane receptor protein tyrosine kinase signaling pathway [GO:0007169] cytoplasm [GO:0005737]; cytosol [GO:0005829]; endosome membrane [GO:0010008]; mitochondrial matrix [GO:0005759]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; Shc-EGFR complex [GO:0070435] cytoplasm [GO:0005737]; cytosol [GO:0005829]; endosome membrane [GO:0010008]; mitochondrial matrix [GO:0005759]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; Shc-EGFR complex [GO:0070435]; ephrin receptor binding [GO:0046875]; epidermal growth factor binding [GO:0048408]; epidermal growth factor receptor binding [GO:0005154]; identical protein binding [GO:0042802]; insulin receptor binding [GO:0005158]; insulin-like growth factor receptor binding [GO:0005159]; neurotrophin TRKA receptor binding [GO:0005168]; phosphoprotein binding [GO:0051219]; phosphotyrosine residue binding [GO:0001784]; protein kinase binding [GO:0019901]; protein phosphatase 2A binding [GO:0051721]; protein-containing complex binding [GO:0044877]; receptor tyrosine kinase binding [GO:0030971]; actin cytoskeleton organization [GO:0030036]; actin cytoskeleton reorganization [GO:0031532]; activation of MAPK activity [GO:0000187]; aging [GO:0007568]; angiogenesis [GO:0001525]; cell-cell adhesion [GO:0098609]; cellular response to growth factor stimulus [GO:0071363]; defense response to bacterium [GO:0042742]; epidermal growth factor receptor signaling pathway [GO:0007173]; heart development [GO:0007507]; insulin receptor signaling pathway [GO:0008286]; MAPK cascade [GO:0000165]; negative regulation of angiogenesis [GO:0016525]; negative regulation of apoptotic process [GO:0043066]; negative regulation of transcription, DNA-templated [GO:0045892]; neuron differentiation [GO:0030182]; neuron projection development [GO:0031175]; positive regulation of cell population proliferation [GO:0008284]; positive regulation of cell proliferation in bone marrow [GO:0071864]; positive regulation of ERK1 and ERK2 cascade [GO:0070374]; positive regulation of MAPK cascade [GO:0043410]; positive regulation of smooth muscle cell proliferation [GO:0048661]; positive regulation of transcription, DNA-templated [GO:0045893]; positive regulation of vasoconstriction [GO:0045907]; regulation of cell population proliferation [GO:0042127]; regulation of growth [GO:0040008]; regulation of smooth muscle contraction [GO:0006940]; regulation of superoxide metabolic process [GO:0090322]; response to endothelin [GO:1990839]; transmembrane receptor protein tyrosine kinase signaling pathway [GO:0007169] ephrin receptor binding [GO:0046875]; epidermal growth factor binding [GO:0048408]; epidermal growth factor receptor binding [GO:0005154]; identical protein binding [GO:0042802]; insulin-like growth factor receptor binding [GO:0005159]; insulin receptor binding [GO:0005158]; neurotrophin TRKA receptor binding [GO:0005168]; phosphoprotein binding [GO:0051219]; phosphotyrosine residue binding [GO:0001784]; protein-containing complex binding [GO:0044877]; protein kinase binding [GO:0019901]; protein phosphatase 2A binding [GO:0051721]; receptor tyrosine kinase binding [GO:0030971] GO:0000165; GO:0000187; GO:0001525; GO:0001784; GO:0005154; GO:0005158; GO:0005159; GO:0005168; GO:0005634; GO:0005737; GO:0005759; GO:0005829; GO:0005886; GO:0006940; GO:0007169; GO:0007173; GO:0007507; GO:0007568; GO:0008284; GO:0008286; GO:0010008; GO:0016525; GO:0019901; GO:0030036; GO:0030182; GO:0030971; GO:0031175; GO:0031532; GO:0040008; GO:0042127; GO:0042742; GO:0042802; GO:0043066; GO:0043410; GO:0044877; GO:0045892; GO:0045893; GO:0045907; GO:0046875; GO:0048408; GO:0048661; GO:0051219; GO:0051721; GO:0070374; GO:0070435; GO:0071363; GO:0071864; GO:0090322; GO:0098609; GO:1990839
TRINITY_DN2128_c0_g1_i7 0 91 0 135 sp P87262 RL34A_YEAST 48 127 57 2 47 424 3 121 3e-21 103.2 RL34A_YEAST reviewed 60S ribosomal protein L34-A (Large ribosomal subunit protein eL34-A) RPL34A YER056C-A YER056BC Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 121 cytoplasmic translation [GO:0002181]; ribosome biogenesis [GO:0042254] cytosolic large ribosomal subunit [GO:0022625]; preribosome, large subunit precursor [GO:0030687] cytosolic large ribosomal subunit [GO:0022625]; preribosome, large subunit precursor [GO:0030687]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; ribosome biogenesis [GO:0042254] structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003735; GO:0022625; GO:0030687; GO:0042254
TRINITY_DN29262_c0_g1_i1 0 35 0 103 sp Q28DS0 SAE1_XENTR 33.8 201 117 4 47 607 9 207 9.8e-20 99 SAE1_XENTR reviewed SUMO-activating enzyme subunit 1 (Ubiquitin-like 1-activating enzyme E1A) sae1 uble1a TGas081c19.1 Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) 347 definitive hemopoiesis [GO:0060216]; hematopoietic stem cell homeostasis [GO:0061484]; protein modification by small protein conjugation [GO:0032446]; protein sumoylation [GO:0016925] cytoplasm [GO:0005737]; SUMO activating enzyme complex [GO:0031510] cytoplasm [GO:0005737]; SUMO activating enzyme complex [GO:0031510]; protein C-terminus binding [GO:0008022]; SUMO activating enzyme activity [GO:0019948]; definitive hemopoiesis [GO:0060216]; hematopoietic stem cell homeostasis [GO:0061484]; protein modification by small protein conjugation [GO:0032446]; protein sumoylation [GO:0016925] protein C-terminus binding [GO:0008022]; SUMO activating enzyme activity [GO:0019948] GO:0005737; GO:0008022; GO:0016925; GO:0019948; GO:0031510; GO:0032446; GO:0060216; GO:0061484
TRINITY_DN11720_c0_g1_i2 0 65 0 78 sp P62312 LSM6_HUMAN 58.1 74 31 0 37 258 1 74 6.2e-20 99 LSM6_HUMAN reviewed U6 snRNA-associated Sm-like protein LSm6 LSM6 Homo sapiens (Human) 80 exonucleolytic catabolism of deadenylated mRNA [GO:0043928]; maturation of SSU-rRNA [GO:0030490]; mRNA catabolic process [GO:0006402]; mRNA splicing, via spliceosome [GO:0000398]; RNA splicing [GO:0008380]; tRNA processing [GO:0008033] cytoplasm [GO:0005737]; cytosol [GO:0005829]; Lsm2-8 complex [GO:0120115]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; P-body [GO:0000932]; small nuclear ribonucleoprotein complex [GO:0030532]; small nucleolar ribonucleoprotein complex [GO:0005732]; U2-type precatalytic spliceosome [GO:0071005]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U6 snRNP [GO:0005688] cytoplasm [GO:0005737]; cytosol [GO:0005829]; Lsm2-8 complex [GO:0120115]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; P-body [GO:0000932]; small nuclear ribonucleoprotein complex [GO:0030532]; small nucleolar ribonucleoprotein complex [GO:0005732]; U2-type precatalytic spliceosome [GO:0071005]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U6 snRNP [GO:0005688]; protein heterodimerization activity [GO:0046982]; RNA binding [GO:0003723]; exonucleolytic catabolism of deadenylated mRNA [GO:0043928]; maturation of SSU-rRNA [GO:0030490]; mRNA catabolic process [GO:0006402]; mRNA splicing, via spliceosome [GO:0000398]; RNA splicing [GO:0008380]; tRNA processing [GO:0008033] protein heterodimerization activity [GO:0046982]; RNA binding [GO:0003723] GO:0000398; GO:0000932; GO:0003723; GO:0005634; GO:0005654; GO:0005688; GO:0005730; GO:0005732; GO:0005737; GO:0005829; GO:0006402; GO:0008033; GO:0008380; GO:0030490; GO:0030532; GO:0043928; GO:0046540; GO:0046982; GO:0071005; GO:0120115
TRINITY_DN21521_c0_g1_i1 0 32 0 124 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN76264_c0_g1_i1 3 445 135 279 sp P29522 EF1B2_BOMMO 71.6 109 31 0 129 455 114 222 3.1e-38 159.5 EF1B2_BOMMO reviewed Elongation factor 1-beta' Bombyx mori (Silk moth) 222 eukaryotic translation elongation factor 1 complex [GO:0005853] eukaryotic translation elongation factor 1 complex [GO:0005853]; translation elongation factor activity [GO:0003746] translation elongation factor activity [GO:0003746] GO:0003746; GO:0005853
TRINITY_DN16224_c0_g1_i1 0 32 0 92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN1804_c1_g1_i20 3411 1676 1544 128 sp Q9YHV4 FSTA_DANRE 43.1 51 26 2 172 324 122 169 9.9e-05 48.9 FSTA_DANRE reviewed Follistatin-A (FS) (Activin-binding protein) (Follistatin-1) (zFst1) fsta fst fst1 si:dkey-111k10.2 si:dkeyp-88a5.1 Danio rerio (Zebrafish) (Brachydanio rerio) 322 cell differentiation [GO:0030154]; determination of dorsal identity [GO:0048263]; dorsal/ventral pattern formation [GO:0009953]; embryonic viscerocranium morphogenesis [GO:0048703]; midbrain development [GO:0030901]; multicellular organism development [GO:0007275]; negative regulation of activin receptor signaling pathway [GO:0032926]; oocyte differentiation [GO:0009994]; otic placode formation [GO:0043049]; regulation of BMP signaling pathway [GO:0030510] extracellular region [GO:0005576]; extracellular space [GO:0005615] extracellular region [GO:0005576]; extracellular space [GO:0005615]; activin binding [GO:0048185]; cell differentiation [GO:0030154]; determination of dorsal identity [GO:0048263]; dorsal/ventral pattern formation [GO:0009953]; embryonic viscerocranium morphogenesis [GO:0048703]; midbrain development [GO:0030901]; multicellular organism development [GO:0007275]; negative regulation of activin receptor signaling pathway [GO:0032926]; oocyte differentiation [GO:0009994]; otic placode formation [GO:0043049]; regulation of BMP signaling pathway [GO:0030510] activin binding [GO:0048185] GO:0005576; GO:0005615; GO:0007275; GO:0009953; GO:0009994; GO:0030154; GO:0030510; GO:0030901; GO:0032926; GO:0043049; GO:0048185; GO:0048263; GO:0048703
TRINITY_DN5291_c0_g2_i24 0 74 0 137 sp Q24154 RL29_DROME 54.9 71 29 1 67 279 1 68 6.9e-11 68.9 RL29_DROME reviewed 60S ribosomal protein L29 (L43) RpL29 RpL43 CG10071 Drosophila melanogaster (Fruit fly) 76 cytoplasmic translation [GO:0002181] cytosolic large ribosomal subunit [GO:0022625] cytosolic large ribosomal subunit [GO:0022625]; chromatin binding [GO:0003682]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181] chromatin binding [GO:0003682]; structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003682; GO:0003735; GO:0022625
TRINITY_DN11251_c0_g1_i2 0 42 0 125 sp Q9U2R0 BIN3D_CAEEL 30.7 251 121 8 572 1174 117 364 2.7e-26 121.3 BIN3D_CAEEL reviewed Probable RNA methyltransferase Y17G7B.18 (EC 2.1.1.-) Y17G7B.18 Caenorhabditis elegans 378 snRNA modification [GO:0040031] O-methyltransferase activity [GO:0008171]; RNA methyltransferase activity [GO:0008173]; snRNA binding [GO:0017069]; snRNA modification [GO:0040031] O-methyltransferase activity [GO:0008171]; RNA methyltransferase activity [GO:0008173]; snRNA binding [GO:0017069] GO:0008171; GO:0008173; GO:0017069; GO:0040031
TRINITY_DN29419_c0_g1_i6 0 102 0 150 sp Q8TE73 DYH5_HUMAN 65.4 283 98 0 1569 2417 1372 1654 7e-108 393.3 DYH5_HUMAN reviewed Dynein heavy chain 5, axonemal (Axonemal beta dynein heavy chain 5) (Ciliary dynein heavy chain 5) DNAH5 DNAHC5 HL1 KIAA1603 Homo sapiens (Human) 4624 cilium assembly [GO:0060271]; cilium movement [GO:0003341]; determination of left/right symmetry [GO:0007368]; epithelial cilium movement involved in extracellular fluid movement [GO:0003351]; flagellated sperm motility [GO:0030317]; heart development [GO:0007507]; lateral ventricle development [GO:0021670]; microtubule-based movement [GO:0007018]; outer dynein arm assembly [GO:0036158] 9+2 motile cilium [GO:0097729]; axoneme [GO:0005930]; cytoplasm [GO:0005737]; dynein complex [GO:0030286]; extracellular region [GO:0005576]; microtubule [GO:0005874]; motile cilium [GO:0031514]; outer dynein arm [GO:0036157] 9+2 motile cilium [GO:0097729]; axoneme [GO:0005930]; cytoplasm [GO:0005737]; dynein complex [GO:0030286]; extracellular region [GO:0005576]; microtubule [GO:0005874]; motile cilium [GO:0031514]; outer dynein arm [GO:0036157]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, minus-end-directed [GO:0008569]; dynein intermediate chain binding [GO:0045505]; dynein light intermediate chain binding [GO:0051959]; cilium assembly [GO:0060271]; cilium movement [GO:0003341]; determination of left/right symmetry [GO:0007368]; epithelial cilium movement involved in extracellular fluid movement [GO:0003351]; flagellated sperm motility [GO:0030317]; heart development [GO:0007507]; lateral ventricle development [GO:0021670]; microtubule-based movement [GO:0007018]; outer dynein arm assembly [GO:0036158] ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, minus-end-directed [GO:0008569]; dynein intermediate chain binding [GO:0045505]; dynein light intermediate chain binding [GO:0051959] GO:0003341; GO:0003351; GO:0005524; GO:0005576; GO:0005737; GO:0005874; GO:0005930; GO:0007018; GO:0007368; GO:0007507; GO:0008569; GO:0021670; GO:0030286; GO:0030317; GO:0031514; GO:0036157; GO:0036158; GO:0045505; GO:0051959; GO:0060271; GO:0097729
TRINITY_DN3104_c0_g1_i17 0 38 0 117 sp Q5JKB0 MCM4_ORYSJ 40.9 762 390 17 286 2502 135 859 1e-146 522.7 MCM4_ORYSJ reviewed DNA replication licensing factor MCM4 (EC 3.6.4.12) (Minichromosome maintenance protein 4) (OsMCM4) MCM4 Os01g0544450 LOC_Os01g36390 OSJNBa0051H17.26 Oryza sativa subsp. japonica (Rice) 862 DNA strand elongation involved in DNA replication [GO:0006271]; DNA unwinding involved in DNA replication [GO:0006268]; double-strand break repair via break-induced replication [GO:0000727]; mitotic DNA replication initiation [GO:1902975]; pollen development [GO:0009555]; pre-replicative complex assembly involved in nuclear cell cycle DNA replication [GO:0006267] cytosol [GO:0005829]; MCM complex [GO:0042555]; nucleus [GO:0005634]; THO complex [GO:0000347] cytosol [GO:0005829]; MCM complex [GO:0042555]; nucleus [GO:0005634]; THO complex [GO:0000347]; ATP binding [GO:0005524]; DNA helicase activity [GO:0003678]; DNA replication origin binding [GO:0003688]; metal ion binding [GO:0046872]; single-stranded DNA binding [GO:0003697]; DNA strand elongation involved in DNA replication [GO:0006271]; DNA unwinding involved in DNA replication [GO:0006268]; double-strand break repair via break-induced replication [GO:0000727]; mitotic DNA replication initiation [GO:1902975]; pollen development [GO:0009555]; pre-replicative complex assembly involved in nuclear cell cycle DNA replication [GO:0006267] ATP binding [GO:0005524]; DNA helicase activity [GO:0003678]; DNA replication origin binding [GO:0003688]; metal ion binding [GO:0046872]; single-stranded DNA binding [GO:0003697] GO:0000347; GO:0000727; GO:0003678; GO:0003688; GO:0003697; GO:0005524; GO:0005634; GO:0005829; GO:0006267; GO:0006268; GO:0006271; GO:0009555; GO:0042555; GO:0046872; GO:1902975
TRINITY_DN1571_c2_g1_i11 0 60 0 87 sp P45335 Y1706_HAEIN 30.6 630 294 10 352 2235 8 496 7.2e-79 297.4 Y1706_HAEIN reviewed Uncharacterized transporter HI_1706 HI_1706 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 669 nitrogen compound transport [GO:0071705] integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; transmembrane transporter activity [GO:0022857]; nitrogen compound transport [GO:0071705] transmembrane transporter activity [GO:0022857] GO:0005886; GO:0016021; GO:0022857; GO:0071705
TRINITY_DN2782_c0_g1_i5 0 69 0 51 sp Q58424 SERA_METJA 34.5 284 171 3 170 976 31 314 1.5e-37 159.1 SERA_METJA reviewed D-3-phosphoglycerate dehydrogenase (PGDH) (EC 1.1.1.95) serA MJ1018 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) 524 cellular amino acid metabolic process [GO:0006520]; L-serine biosynthetic process [GO:0006564] NAD binding [GO:0051287]; phosphoglycerate dehydrogenase activity [GO:0004617]; cellular amino acid metabolic process [GO:0006520]; L-serine biosynthetic process [GO:0006564] NAD binding [GO:0051287]; phosphoglycerate dehydrogenase activity [GO:0004617] GO:0004617; GO:0006520; GO:0006564; GO:0051287
TRINITY_DN11234_c0_g1_i2 0 59 0 54 sp Q8VYF1 RL152_ARATH 66.2 204 69 0 42 653 1 204 4.9e-72 272.7 RL152_ARATH reviewed 60S ribosomal protein L15-2 RPL15B At4g17390 dl4730c FCAALL.32 Arabidopsis thaliana (Mouse-ear cress) 204 cytoplasmic translation [GO:0002181] cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730] cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; nucleolus [GO:0005730]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181] mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003723; GO:0003729; GO:0003735; GO:0005730; GO:0005829; GO:0022625
TRINITY_DN26743_c0_g1_i5 0 108 0 101 sp P04069 CBPB_ASTAS 38.8 309 177 7 457 1371 1 301 1e-55 219.9 CBPB_ASTAS reviewed Carboxypeptidase B (EC 3.4.17.2) Astacus astacus (Noble crayfish) (Astacus fluviatilis) 303 extracellular region [GO:0005576] extracellular region [GO:0005576]; metallocarboxypeptidase activity [GO:0004181]; zinc ion binding [GO:0008270] metallocarboxypeptidase activity [GO:0004181]; zinc ion binding [GO:0008270] GO:0004181; GO:0005576; GO:0008270
TRINITY_DN11683_c0_g1_i2 0 80 0 149 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN83943_c0_g1_i4 0 322 18 355 sp Q99L47 F10A1_MOUSE 50.2 239 115 1 36 740 1 239 1.6e-47 192.6 F10A1_MOUSE reviewed Hsc70-interacting protein (Hip) (Protein FAM10A1) (Protein ST13 homolog) St13 Fam10a1 Hip Mus musculus (Mouse) 371 chaperone cofactor-dependent protein refolding [GO:0051085]; chaperone-mediated protein folding [GO:0061077]; negative regulation of protein refolding [GO:0061084]; protein-containing complex assembly [GO:0065003]; response to bacterium [GO:0009617] cytosol [GO:0005829]; protein-containing complex [GO:0032991] cytosol [GO:0005829]; protein-containing complex [GO:0032991]; chaperone binding [GO:0051087]; dATP binding [GO:0032564]; heat shock protein binding [GO:0031072]; Hsp70 protein binding [GO:0030544]; identical protein binding [GO:0042802]; protein dimerization activity [GO:0046983]; protein domain specific binding [GO:0019904]; protein-containing complex binding [GO:0044877]; unfolded protein binding [GO:0051082]; chaperone cofactor-dependent protein refolding [GO:0051085]; chaperone-mediated protein folding [GO:0061077]; negative regulation of protein refolding [GO:0061084]; protein-containing complex assembly [GO:0065003]; response to bacterium [GO:0009617] chaperone binding [GO:0051087]; dATP binding [GO:0032564]; heat shock protein binding [GO:0031072]; Hsp70 protein binding [GO:0030544]; identical protein binding [GO:0042802]; protein-containing complex binding [GO:0044877]; protein dimerization activity [GO:0046983]; protein domain specific binding [GO:0019904]; unfolded protein binding [GO:0051082] GO:0005829; GO:0009617; GO:0019904; GO:0030544; GO:0031072; GO:0032564; GO:0032991; GO:0042802; GO:0044877; GO:0046983; GO:0051082; GO:0051085; GO:0051087; GO:0061077; GO:0061084; GO:0065003
TRINITY_DN21714_c0_g1_i1 0 39 0 79 sp P98081 DAB_DROME 77.6 147 32 1 239 676 38 184 1.5e-60 237.3 DAB_DROME reviewed Protein disabled Dab CG9695 Drosophila melanogaster (Fruit fly) 2224 cellularization [GO:0007349]; clathrin-dependent endocytosis [GO:0072583]; compound eye photoreceptor development [GO:0042051]; dorsal closure [GO:0007391]; motor neuron axon guidance [GO:0008045]; positive regulation of sevenless signaling pathway [GO:0045874]; synaptic vesicle endocytosis [GO:0048488] axon [GO:0030424]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; presynapse [GO:0098793] axon [GO:0030424]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; presynapse [GO:0098793]; sevenless binding [GO:0005118]; SH3 domain binding [GO:0017124]; cellularization [GO:0007349]; clathrin-dependent endocytosis [GO:0072583]; compound eye photoreceptor development [GO:0042051]; dorsal closure [GO:0007391]; motor neuron axon guidance [GO:0008045]; positive regulation of sevenless signaling pathway [GO:0045874]; synaptic vesicle endocytosis [GO:0048488] sevenless binding [GO:0005118]; SH3 domain binding [GO:0017124] GO:0005118; GO:0005737; GO:0005829; GO:0007349; GO:0007391; GO:0008045; GO:0017124; GO:0030424; GO:0042051; GO:0045874; GO:0048488; GO:0072583; GO:0098793
TRINITY_DN989_c0_g1_i6 0 34 0 88 sp Q805B4 TISDB_XENLA 35.4 113 53 4 1153 1476 132 229 2.3e-05 53.5 TISDB_XENLA reviewed mRNA decay activator protein ZFP36L2-B (CCCH zinc finger protein 3-B) (XC3H-3b) (Zinc finger protein 36, C3H1 type-like 2-B) zfp36l2-B zfp36l2 Xenopus laevis (African clawed frog) 364 3'-UTR-mediated mRNA destabilization [GO:0061158]; cellular response to epidermal growth factor stimulus [GO:0071364]; cellular response to fibroblast growth factor stimulus [GO:0044344]; cellular response to glucocorticoid stimulus [GO:0071385]; cellular response to granulocyte macrophage colony-stimulating factor stimulus [GO:0097011]; cellular response to transforming growth factor beta stimulus [GO:0071560]; cellular response to tumor necrosis factor [GO:0071356]; definitive hemopoiesis [GO:0060216]; ERK1 and ERK2 cascade [GO:0070371]; hemopoiesis [GO:0030097]; MAPK cascade [GO:0000165]; mRNA catabolic process [GO:0006402]; negative regulation of fat cell differentiation [GO:0045599]; negative regulation of mitotic cell cycle phase transition [GO:1901991]; negative regulation of stem cell differentiation [GO:2000737]; nephron tubule development [GO:0072080]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288]; nuclear-transcribed mRNA catabolic process, deadenylation-independent decay [GO:0031086]; positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:1900153]; pronephric nephron tubule development [GO:0039020]; pronephros development [GO:0048793]; regulation of B cell differentiation [GO:0045577]; regulation of mRNA stability [GO:0043488]; somatic stem cell division [GO:0048103]; somatic stem cell population maintenance [GO:0035019] cytoplasm [GO:0005737]; nucleus [GO:0005634] cytoplasm [GO:0005737]; nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA 3'-UTR AU-rich region binding [GO:0035925]; 3'-UTR-mediated mRNA destabilization [GO:0061158]; cellular response to epidermal growth factor stimulus [GO:0071364]; cellular response to fibroblast growth factor stimulus [GO:0044344]; cellular response to glucocorticoid stimulus [GO:0071385]; cellular response to granulocyte macrophage colony-stimulating factor stimulus [GO:0097011]; cellular response to transforming growth factor beta stimulus [GO:0071560]; cellular response to tumor necrosis factor [GO:0071356]; definitive hemopoiesis [GO:0060216]; ERK1 and ERK2 cascade [GO:0070371]; hemopoiesis [GO:0030097]; MAPK cascade [GO:0000165]; mRNA catabolic process [GO:0006402]; negative regulation of fat cell differentiation [GO:0045599]; negative regulation of mitotic cell cycle phase transition [GO:1901991]; negative regulation of stem cell differentiation [GO:2000737]; nephron tubule development [GO:0072080]; nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288]; nuclear-transcribed mRNA catabolic process, deadenylation-independent decay [GO:0031086]; positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:1900153]; pronephric nephron tubule development [GO:0039020]; pronephros development [GO:0048793]; regulation of B cell differentiation [GO:0045577]; regulation of mRNA stability [GO:0043488]; somatic stem cell division [GO:0048103]; somatic stem cell population maintenance [GO:0035019] DNA binding [GO:0003677]; metal ion binding [GO:0046872]; mRNA 3'-UTR AU-rich region binding [GO:0035925] GO:0000165; GO:0000288; GO:0003677; GO:0005634; GO:0005737; GO:0006402; GO:0030097; GO:0031086; GO:0035019; GO:0035925; GO:0039020; GO:0043488; GO:0044344; GO:0045577; GO:0045599; GO:0046872; GO:0048103; GO:0048793; GO:0060216; GO:0061158; GO:0070371; GO:0071356; GO:0071364; GO:0071385; GO:0071560; GO:0072080; GO:0097011; GO:1900153; GO:1901991; GO:2000737
TRINITY_DN9542_c1_g1_i1 0 74 0 178 sp P09446 HSP7A_CAEEL 88 83 10 0 3 251 135 217 2.3e-35 149.1 HSP1_CAEEL reviewed Heat shock protein hsp-1 (Heat shock 70 kDa protein A) hsp-1 hsp70a F26D10.3 Caenorhabditis elegans 640 cellular response to unfolded protein [GO:0034620]; chaperone cofactor-dependent protein refolding [GO:0051085]; determination of adult lifespan [GO:0008340]; protein refolding [GO:0042026]; response to heat [GO:0009408]; response to unfolded protein [GO:0006986]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle-mediated transport [GO:0016192] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; heat shock protein binding [GO:0031072]; misfolded protein binding [GO:0051787]; protein folding chaperone [GO:0044183]; unfolded protein binding [GO:0051082]; cellular response to unfolded protein [GO:0034620]; chaperone cofactor-dependent protein refolding [GO:0051085]; determination of adult lifespan [GO:0008340]; protein refolding [GO:0042026]; response to heat [GO:0009408]; response to unfolded protein [GO:0006986]; retrograde transport, endosome to Golgi [GO:0042147]; vesicle-mediated transport [GO:0016192] ATPase activity [GO:0016887]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; misfolded protein binding [GO:0051787]; protein folding chaperone [GO:0044183]; unfolded protein binding [GO:0051082] GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0005886; GO:0006986; GO:0008340; GO:0009408; GO:0016192; GO:0016887; GO:0031072; GO:0034620; GO:0042026; GO:0042147; GO:0044183; GO:0051082; GO:0051085; GO:0051787
TRINITY_DN14959_c1_g1_i32 0 202 23 99 sp P51610 HCFC1_HUMAN 73.6 402 101 3 64 1257 8 408 9.9e-189 662.9 HCFC1_HUMAN reviewed Host cell factor 1 (HCF) (HCF-1) (C1 factor) (CFF) (VCAF) (VP16 accessory protein) [Cleaved into: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6] HCFC1 HCF1 HFC1 Homo sapiens (Human) 2035 blastocyst hatching [GO:0001835]; cell cycle [GO:0007049]; cellular response to organic cyclic compound [GO:0071407]; chromatin remodeling [GO:0006338]; histone H4-K16 acetylation [GO:0043984]; histone H4-K5 acetylation [GO:0043981]; histone H4-K8 acetylation [GO:0043982]; mitochondrion organization [GO:0007005]; negative regulation of transcription by RNA polymerase II [GO:0000122]; positive regulation of cell cycle [GO:0045787]; positive regulation of gene expression [GO:0010628]; positive regulation of transcription, DNA-templated [GO:0045893]; protein deubiquitination [GO:0016579]; protein stabilization [GO:0050821]; regulation of protein-containing complex assembly [GO:0043254]; regulation of transcription, DNA-templated [GO:0006355]; release from viral latency [GO:0019046] axon [GO:0030424]; cytoplasm [GO:0005737]; dendrite [GO:0030425]; histone acetyltransferase complex [GO:0000123]; membrane [GO:0016020]; MLL1 complex [GO:0071339]; neuronal cell body [GO:0043025]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; protein-containing complex [GO:0032991]; Set1C/COMPASS complex [GO:0048188] axon [GO:0030424]; cytoplasm [GO:0005737]; dendrite [GO:0030425]; histone acetyltransferase complex [GO:0000123]; membrane [GO:0016020]; MLL1 complex [GO:0071339]; neuronal cell body [GO:0043025]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; protein-containing complex [GO:0032991]; Set1C/COMPASS complex [GO:0048188]; activating transcription factor binding [GO:0033613]; cadherin binding [GO:0045296]; chromatin binding [GO:0003682]; identical protein binding [GO:0042802]; protein-macromolecule adaptor activity [GO:0030674]; RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO:0000978]; transcription coactivator activity [GO:0003713]; transcription factor binding [GO:0008134]; blastocyst hatching [GO:0001835]; cell cycle [GO:0007049]; cellular response to organic cyclic compound [GO:0071407]; chromatin remodeling [GO:0006338]; histone H4-K16 acetylation [GO:0043984]; histone H4-K5 acetylation [GO:0043981]; histone H4-K8 acetylation [GO:0043982]; mitochondrion organization [GO:0007005]; negative regulation of transcription by RNA polymerase II [GO:0000122]; positive regulation of cell cycle [GO:0045787]; positive regulation of gene expression [GO:0010628]; positive regulation of transcription, DNA-templated [GO:0045893]; protein deubiquitination [GO:0016579]; protein stabilization [GO:0050821]; regulation of protein-containing complex assembly [GO:0043254]; regulation of transcription, DNA-templated [GO:0006355]; release from viral latency [GO:0019046] activating transcription factor binding [GO:0033613]; cadherin binding [GO:0045296]; chromatin binding [GO:0003682]; identical protein binding [GO:0042802]; protein-macromolecule adaptor activity [GO:0030674]; RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO:0000978]; transcription coactivator activity [GO:0003713]; transcription factor binding [GO:0008134] GO:0000122; GO:0000123; GO:0000978; GO:0001835; GO:0003682; GO:0003713; GO:0005634; GO:0005654; GO:0005737; GO:0006338; GO:0006355; GO:0007005; GO:0007049; GO:0008134; GO:0010628; GO:0016020; GO:0016579; GO:0019046; GO:0030424; GO:0030425; GO:0030674; GO:0032991; GO:0033613; GO:0042802; GO:0043025; GO:0043254; GO:0043981; GO:0043982; GO:0043984; GO:0045296; GO:0045787; GO:0045893; GO:0048188; GO:0050821; GO:0071339; GO:0071407
TRINITY_DN10564_c0_g1_i12 78 0 98 0 sp O61585 KTNB1_STRPU 42 174 99 1 460 981 519 690 9.4e-34 147.1 KTNB1_STRPU reviewed Katanin p80 WD40 repeat-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin) KATNB1 Strongylocentrotus purpuratus (Purple sea urchin) 690 cell cycle [GO:0007049]; cell division [GO:0051301]; microtubule depolymerization [GO:0007019]; microtubule severing [GO:0051013] centrosome [GO:0005813]; cytoplasm [GO:0005737]; katanin complex [GO:0008352]; microtubule [GO:0005874]; spindle [GO:0005819]; spindle pole [GO:0000922] centrosome [GO:0005813]; cytoplasm [GO:0005737]; katanin complex [GO:0008352]; microtubule [GO:0005874]; spindle [GO:0005819]; spindle pole [GO:0000922]; microtubule binding [GO:0008017]; cell cycle [GO:0007049]; cell division [GO:0051301]; microtubule depolymerization [GO:0007019]; microtubule severing [GO:0051013] microtubule binding [GO:0008017] GO:0000922; GO:0005737; GO:0005813; GO:0005819; GO:0005874; GO:0007019; GO:0007049; GO:0008017; GO:0008352; GO:0051013; GO:0051301
TRINITY_DN30662_c0_g1_i1 0 41 0 81 sp P52434 RPAB3_HUMAN 32.2 146 91 3 61 480 4 147 4.7e-16 86.7 RPAB3_HUMAN reviewed DNA-directed RNA polymerases I, II, and III subunit RPABC3 (RNA polymerases I, II, and III subunit ABC3) (DNA-directed RNA polymerase II subunit H) (DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide) (RPB17) (RPB8 homolog) (hRPB8) POLR2H Homo sapiens (Human) 150 7-methylguanosine mRNA capping [GO:0006370]; fibroblast growth factor receptor signaling pathway [GO:0008543]; mRNA splicing, via spliceosome [GO:0000398]; positive regulation of gene expression, epigenetic [GO:0045815]; positive regulation of type I interferon production [GO:0032481]; positive regulation of viral transcription [GO:0050434]; regulation of gene silencing by miRNA [GO:0060964]; RNA metabolic process [GO:0016070]; snRNA transcription by RNA polymerase II [GO:0042795]; somatic stem cell population maintenance [GO:0035019]; termination of RNA polymerase I transcription [GO:0006363]; transcription, DNA-templated [GO:0006351]; transcription by RNA polymerase II [GO:0006366]; transcription-coupled nucleotide-excision repair [GO:0006283]; transcription elongation from RNA polymerase II promoter [GO:0006368]; transcription elongation from RNA polymerase I promoter [GO:0006362]; transcription initiation from RNA polymerase II promoter [GO:0006367]; transcription initiation from RNA polymerase I promoter [GO:0006361] cytosol [GO:0005829]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; protein-DNA complex [GO:0032993]; RNA polymerase I complex [GO:0005736]; RNA polymerase II, core complex [GO:0005665]; RNA polymerase III complex [GO:0005666] cytosol [GO:0005829]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; protein-DNA complex [GO:0032993]; RNA polymerase I complex [GO:0005736]; RNA polymerase II, core complex [GO:0005665]; RNA polymerase III complex [GO:0005666]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; single-stranded DNA binding [GO:0003697]; 7-methylguanosine mRNA capping [GO:0006370]; fibroblast growth factor receptor signaling pathway [GO:0008543]; mRNA splicing, via spliceosome [GO:0000398]; positive regulation of gene expression, epigenetic [GO:0045815]; positive regulation of type I interferon production [GO:0032481]; positive regulation of viral transcription [GO:0050434]; regulation of gene silencing by miRNA [GO:0060964]; RNA metabolic process [GO:0016070]; snRNA transcription by RNA polymerase II [GO:0042795]; somatic stem cell population maintenance [GO:0035019]; termination of RNA polymerase I transcription [GO:0006363]; transcription by RNA polymerase II [GO:0006366]; transcription elongation from RNA polymerase I promoter [GO:0006362]; transcription elongation from RNA polymerase II promoter [GO:0006368]; transcription initiation from RNA polymerase I promoter [GO:0006361]; transcription initiation from RNA polymerase II promoter [GO:0006367]; transcription, DNA-templated [GO:0006351]; transcription-coupled nucleotide-excision repair [GO:0006283] DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; single-stranded DNA binding [GO:0003697] GO:0000398; GO:0003697; GO:0003899; GO:0005634; GO:0005654; GO:0005665; GO:0005666; GO:0005736; GO:0005829; GO:0006283; GO:0006351; GO:0006361; GO:0006362; GO:0006363; GO:0006366; GO:0006367; GO:0006368; GO:0006370; GO:0008543; GO:0016070; GO:0032481; GO:0032993; GO:0035019; GO:0042795; GO:0045815; GO:0050434; GO:0060964
TRINITY_DN13466_c0_g1_i1 0 65 0 135 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN71_c0_g1_i5 0 26 0 137 sp Q93050 VPP1_HUMAN 61.2 852 291 12 6268 8769 1 830 1.5e-290 1002.3 VPP1_HUMAN reviewed V-type proton ATPase 116 kDa subunit a1 (V-ATPase 116 kDa subunit a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar adenosine triphosphatase subunit Ac116) (Vacuolar proton pump subunit 1) (Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1) ATP6V0A1 ATP6N1 ATP6N1A VPP1 Homo sapiens (Human) 837 insulin receptor signaling pathway [GO:0008286]; ion transmembrane transport [GO:0034220]; neutrophil degranulation [GO:0043312]; phagosome acidification [GO:0090383]; regulation of macroautophagy [GO:0016241]; toxin transport [GO:1901998]; transferrin transport [GO:0033572]; vacuolar acidification [GO:0007035] cytosol [GO:0005829]; endosome membrane [GO:0010008]; extracellular exosome [GO:0070062]; ficolin-1-rich granule membrane [GO:0101003]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; lysosomal membrane [GO:0005765]; melanosome [GO:0042470]; nuclear speck [GO:0016607]; perinuclear region of cytoplasm [GO:0048471]; phagocytic vesicle membrane [GO:0030670]; plasma membrane [GO:0005886]; secretory granule membrane [GO:0030667]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; vacuolar proton-transporting V-type ATPase complex [GO:0016471] cytosol [GO:0005829]; endosome membrane [GO:0010008]; extracellular exosome [GO:0070062]; ficolin-1-rich granule membrane [GO:0101003]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; lysosomal membrane [GO:0005765]; melanosome [GO:0042470]; nuclear speck [GO:0016607]; perinuclear region of cytoplasm [GO:0048471]; phagocytic vesicle membrane [GO:0030670]; plasma membrane [GO:0005886]; secretory granule membrane [GO:0030667]; vacuolar proton-transporting V-type ATPase complex [GO:0016471]; vacuolar proton-transporting V-type ATPase, V0 domain [GO:0000220]; ATPase binding [GO:0051117]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]; insulin receptor signaling pathway [GO:0008286]; ion transmembrane transport [GO:0034220]; neutrophil degranulation [GO:0043312]; phagosome acidification [GO:0090383]; regulation of macroautophagy [GO:0016241]; toxin transport [GO:1901998]; transferrin transport [GO:0033572]; vacuolar acidification [GO:0007035] ATPase binding [GO:0051117]; proton-transporting ATPase activity, rotational mechanism [GO:0046961] GO:0000220; GO:0005765; GO:0005794; GO:0005829; GO:0005886; GO:0007035; GO:0008286; GO:0010008; GO:0016021; GO:0016241; GO:0016471; GO:0016607; GO:0030667; GO:0030670; GO:0033572; GO:0034220; GO:0042470; GO:0043231; GO:0043312; GO:0046961; GO:0048471; GO:0051117; GO:0070062; GO:0090383; GO:0101003; GO:1901998
TRINITY_DN13529_c0_g1_i15 0 55 0 58 sp Q9FMU6 MPCP3_ARATH 45.3 298 146 6 107 997 77 358 2.5e-59 230.7 MPCP3_ARATH reviewed Mitochondrial phosphate carrier protein 3, mitochondrial (Mitochondrial phosphate transporter 3) (MPT3) (Phosphate transporter 3;1) MPT3 AT5 PHT3;1 At5g14040 MUA22_4 Arabidopsis thaliana (Mouse-ear cress) 375 phosphate ion transmembrane transport [GO:0035435]; response to salt stress [GO:0009651] cell wall [GO:0005618]; integral component of mitochondrial inner membrane [GO:0031305]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774] cell wall [GO:0005618]; integral component of mitochondrial inner membrane [GO:0031305]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; inorganic phosphate transmembrane transporter activity [GO:0005315]; phosphate ion transmembrane transport [GO:0035435]; response to salt stress [GO:0009651] inorganic phosphate transmembrane transporter activity [GO:0005315] GO:0005315; GO:0005618; GO:0005739; GO:0005774; GO:0009651; GO:0031305; GO:0035435
TRINITY_DN2622_c0_g1_i13 0 55 0 183 sp P21187 PABP_DROME 29 183 107 4 1161 1697 81 244 4.2e-09 65.1 PABP_DROME reviewed Polyadenylate-binding protein (PABP) (Poly(A)-binding protein) pAbp CG5119 Drosophila melanogaster (Fruit fly) 634 chemical synaptic transmission [GO:0007268]; dorsal/ventral pattern formation [GO:0009953]; male meiosis cytokinesis [GO:0007112]; male meiotic nuclear division [GO:0007140]; mRNA splicing, via spliceosome [GO:0000398]; negative regulation of neuron death [GO:1901215]; oocyte development [GO:0048599]; oogenesis [GO:0048477]; positive regulation of translation [GO:0045727]; regulation of compound eye photoreceptor development [GO:0045314]; spermatid nucleus differentiation [GO:0007289]; spermatogenesis [GO:0007283] catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; nucleus [GO:0005634]; precatalytic spliceosome [GO:0071011]; ribonucleoprotein complex [GO:1990904]; synapse [GO:0045202] catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; nucleus [GO:0005634]; precatalytic spliceosome [GO:0071011]; ribonucleoprotein complex [GO:1990904]; synapse [GO:0045202]; mRNA 3'-UTR binding [GO:0003730]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143]; poly(U) RNA binding [GO:0008266]; RNA binding [GO:0003723]; chemical synaptic transmission [GO:0007268]; dorsal/ventral pattern formation [GO:0009953]; male meiosis cytokinesis [GO:0007112]; male meiotic nuclear division [GO:0007140]; mRNA splicing, via spliceosome [GO:0000398]; negative regulation of neuron death [GO:1901215]; oocyte development [GO:0048599]; oogenesis [GO:0048477]; positive regulation of translation [GO:0045727]; regulation of compound eye photoreceptor development [GO:0045314]; spermatid nucleus differentiation [GO:0007289]; spermatogenesis [GO:0007283] mRNA 3'-UTR binding [GO:0003730]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143]; poly(U) RNA binding [GO:0008266]; RNA binding [GO:0003723] GO:0000398; GO:0003723; GO:0003729; GO:0003730; GO:0005634; GO:0005737; GO:0005829; GO:0007112; GO:0007140; GO:0007268; GO:0007283; GO:0007289; GO:0008143; GO:0008266; GO:0009953; GO:0010494; GO:0045202; GO:0045314; GO:0045727; GO:0048477; GO:0048599; GO:0071011; GO:0071013; GO:1901215; GO:1990904
TRINITY_DN21508_c0_g1_i16 0 20 0 110 sp P19799 TRY1_XENLA 27.4 234 128 13 99 752 7 214 1e-10 70.1 TRY1_XENLA reviewed Trypsin (EC 3.4.21.4) Xenopus laevis (African clawed frog) 243 digestion [GO:0007586] extracellular space [GO:0005615] extracellular space [GO:0005615]; metal ion binding [GO:0046872]; serine-type endopeptidase activity [GO:0004252]; digestion [GO:0007586] metal ion binding [GO:0046872]; serine-type endopeptidase activity [GO:0004252] GO:0004252; GO:0005615; GO:0007586; GO:0046872
TRINITY_DN6955_c0_g1_i2 0 25 0 256 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN8550_c0_g1_i1 0 95 0 188 sp A2ZB00 RS16_ORYSI 69.3 137 42 0 75 485 13 149 4.7e-52 206.1 RS16_ORYSI reviewed 40S ribosomal protein S16 RPS16A OsI_033743; RPS16B OsI_036072 Oryza sativa subsp. indica (Rice) 149 translation [GO:0006412] cytoplasm [GO:0005737]; ribosome [GO:0005840] cytoplasm [GO:0005737]; ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005737; GO:0005840; GO:0006412
TRINITY_DN1815_c0_g1_i2 0 35 0 88 sp Q8NF37 PCAT1_HUMAN 32.6 288 169 7 543 1367 45 320 3e-31 139 PCAT1_HUMAN reviewed Lysophosphatidylcholine acyltransferase 1 (LPC acyltransferase 1) (LPCAT-1) (LysoPC acyltransferase 1) (EC 2.3.1.23) (1-acylglycerol-3-phosphate O-acyltransferase) (EC 2.3.1.51) (1-acylglycerophosphocholine O-acyltransferase) (1-alkenylglycerophosphocholine O-acyltransferase) (EC 2.3.1.25) (1-alkylglycerophosphocholine O-acetyltransferase) (EC 2.3.1.67) (Acetyl-CoA:lyso-platelet-activating factor acetyltransferase) (Acetyl-CoA:lyso-PAF acetyltransferase) (Lyso-PAF acetyltransferase) (LysoPAFAT) (Acyltransferase-like 2) (Phosphonoformate immuno-associated protein 3) LPCAT1 AYTL2 PFAAP3 Homo sapiens (Human) 534 negative regulation of phosphatidylcholine biosynthetic process [GO:2001246]; neutrophil degranulation [GO:0043312]; phosphatidic acid biosynthetic process [GO:0006654]; phosphatidylcholine acyl-chain remodeling [GO:0036151]; phosphatidylcholine biosynthetic process [GO:0006656]; phosphatidylglycerol acyl-chain remodeling [GO:0036148]; phospholipid biosynthetic process [GO:0008654]; positive regulation of protein catabolic process [GO:0045732]; retina development in camera-type eye [GO:0060041]; surfactant homeostasis [GO:0043129] azurophil granule membrane [GO:0035577]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; lipid droplet [GO:0005811]; membrane [GO:0016020]; plasma membrane [GO:0005886] azurophil granule membrane [GO:0035577]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; lipid droplet [GO:0005811]; membrane [GO:0016020]; plasma membrane [GO:0005886]; 1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]; 1-acylglycerophosphocholine O-acyltransferase activity [GO:0047184]; 1-alkenylglycerophosphocholine O-acyltransferase activity [GO:0047159]; 1-alkylglycerophosphocholine O-acetyltransferase activity [GO:0047192]; 1-alkylglycerophosphocholine O-acyltransferase activity [GO:0047191]; calcium ion binding [GO:0005509]; plasmalogen synthase activity [GO:0050200]; negative regulation of phosphatidylcholine biosynthetic process [GO:2001246]; neutrophil degranulation [GO:0043312]; phosphatidic acid biosynthetic process [GO:0006654]; phosphatidylcholine acyl-chain remodeling [GO:0036151]; phosphatidylcholine biosynthetic process [GO:0006656]; phosphatidylglycerol acyl-chain remodeling [GO:0036148]; phospholipid biosynthetic process [GO:0008654]; positive regulation of protein catabolic process [GO:0045732]; retina development in camera-type eye [GO:0060041]; surfactant homeostasis [GO:0043129] 1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]; 1-acylglycerophosphocholine O-acyltransferase activity [GO:0047184]; 1-alkenylglycerophosphocholine O-acyltransferase activity [GO:0047159]; 1-alkylglycerophosphocholine O-acetyltransferase activity [GO:0047192]; 1-alkylglycerophosphocholine O-acyltransferase activity [GO:0047191]; calcium ion binding [GO:0005509]; plasmalogen synthase activity [GO:0050200] GO:0000139; GO:0003841; GO:0005509; GO:0005783; GO:0005789; GO:0005794; GO:0005811; GO:0005886; GO:0006654; GO:0006656; GO:0008654; GO:0016020; GO:0016021; GO:0035577; GO:0036148; GO:0036151; GO:0043129; GO:0043312; GO:0045732; GO:0047159; GO:0047184; GO:0047191; GO:0047192; GO:0050200; GO:0060041; GO:2001246
TRINITY_DN1473_c3_g1_i4 3 86 0 151 sp P56941 NPC1_PIG 37.3 1441 660 29 338 4546 25 1259 2.2e-247 857.8 NPC1_PIG reviewed NPC intracellular cholesterol transporter 1 (Niemann-Pick C1 protein) NPC1 Sus scrofa (Pig) 1277 bile acid metabolic process [GO:0008206]; cholesterol homeostasis [GO:0042632]; cholesterol metabolic process [GO:0008203]; cholesterol transport [GO:0030301]; intracellular cholesterol transport [GO:0032367]; lysosomal transport [GO:0007041]; protein glycosylation [GO:0006486] endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; integral component of lysosomal membrane [GO:1905103]; integral component of plasma membrane [GO:0005887]; late endosome membrane [GO:0031902]; lysosome [GO:0005764]; nuclear envelope [GO:0005635]; perinuclear region of cytoplasm [GO:0048471] endoplasmic reticulum [GO:0005783]; extracellular region [GO:0005576]; integral component of lysosomal membrane [GO:1905103]; integral component of plasma membrane [GO:0005887]; late endosome membrane [GO:0031902]; lysosome [GO:0005764]; nuclear envelope [GO:0005635]; perinuclear region of cytoplasm [GO:0048471]; cholesterol binding [GO:0015485]; lipid transporter activity [GO:0005319]; bile acid metabolic process [GO:0008206]; cholesterol homeostasis [GO:0042632]; cholesterol metabolic process [GO:0008203]; cholesterol transport [GO:0030301]; intracellular cholesterol transport [GO:0032367]; lysosomal transport [GO:0007041]; protein glycosylation [GO:0006486] cholesterol binding [GO:0015485]; lipid transporter activity [GO:0005319] GO:0005319; GO:0005576; GO:0005635; GO:0005764; GO:0005783; GO:0005887; GO:0006486; GO:0007041; GO:0008203; GO:0008206; GO:0015485; GO:0030301; GO:0031902; GO:0032367; GO:0042632; GO:0048471; GO:1905103
TRINITY_DN75648_c0_g1_i1 8 525 1 135 sp Q5RFH3 NDKB_PONAB 73.7 57 15 0 92 262 5 61 3.1e-19 95.5 NDKB_PONAB reviewed Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (EC 2.7.4.6) (Histidine protein kinase NDKB) (EC 2.7.13.3) NME2 Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii) 152 CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; integrin-mediated signaling pathway [GO:0007229]; nucleoside diphosphate phosphorylation [GO:0006165]; nucleoside triphosphate biosynthetic process [GO:0009142]; positive regulation of transcription, DNA-templated [GO:0045893]; positive regulation of transcription by RNA polymerase II [GO:0045944]; UTP biosynthetic process [GO:0006228] cell periphery [GO:0071944]; cytoplasm [GO:0005737]; lamellipodium [GO:0030027]; nucleus [GO:0005634]; ruffle [GO:0001726] cell periphery [GO:0071944]; cytoplasm [GO:0005737]; lamellipodium [GO:0030027]; nucleus [GO:0005634]; ruffle [GO:0001726]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; G-quadruplex DNA binding [GO:0051880]; metal ion binding [GO:0046872]; nucleoside diphosphate kinase activity [GO:0004550]; protein histidine kinase activity [GO:0004673]; CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; integrin-mediated signaling pathway [GO:0007229]; nucleoside diphosphate phosphorylation [GO:0006165]; nucleoside triphosphate biosynthetic process [GO:0009142]; positive regulation of transcription by RNA polymerase II [GO:0045944]; positive regulation of transcription, DNA-templated [GO:0045893]; UTP biosynthetic process [GO:0006228] ATP binding [GO:0005524]; DNA binding [GO:0003677]; G-quadruplex DNA binding [GO:0051880]; metal ion binding [GO:0046872]; nucleoside diphosphate kinase activity [GO:0004550]; protein histidine kinase activity [GO:0004673] GO:0001726; GO:0003677; GO:0004550; GO:0004673; GO:0005524; GO:0005634; GO:0005737; GO:0006165; GO:0006183; GO:0006228; GO:0006241; GO:0007229; GO:0009142; GO:0030027; GO:0045893; GO:0045944; GO:0046872; GO:0051880; GO:0071944
TRINITY_DN2362_c0_g1_i5 0 22 0 109 sp P57106 MDHC2_ARATH 57.5 332 132 4 139 1122 2 328 2.2e-102 374.4 MDHC2_ARATH reviewed Malate dehydrogenase 2, cytoplasmic (EC 1.1.1.37) (Cytosolic NAD-dependent malate dehydrogenase 2) (cNAD-MDH2) (Cytosolic malate dehydrogenase 2) (Cytosolic MDH2) MDH2 At5g43330 MWF20.2 Arabidopsis thaliana (Mouse-ear cress) 332 carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]; NADH metabolic process [GO:0006734]; oxaloacetate metabolic process [GO:0006107]; tricarboxylic acid cycle [GO:0006099] cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; plastid [GO:0009536] cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; plastid [GO:0009536]; L-malate dehydrogenase activity [GO:0030060]; carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]; NADH metabolic process [GO:0006734]; oxaloacetate metabolic process [GO:0006107]; tricarboxylic acid cycle [GO:0006099] L-malate dehydrogenase activity [GO:0030060] GO:0005829; GO:0005886; GO:0005975; GO:0006099; GO:0006107; GO:0006108; GO:0006734; GO:0009506; GO:0009536; GO:0030060
TRINITY_DN12473_c0_g1_i10 0 66 0 109 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN11078_c0_g1_i6 0 38 0 230 sp Q5E988 RS5_BOVIN 71.2 198 48 2 147 740 16 204 7.7e-73 275.4 RS5_BOVIN reviewed 40S ribosomal protein S5 [Cleaved into: 40S ribosomal protein S5, N-terminally processed] RPS5 Bos taurus (Bovine) 204 regulation of translational fidelity [GO:0006450]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] cytosolic small ribosomal subunit [GO:0022627]; ribosome [GO:0005840] cytosolic small ribosomal subunit [GO:0022627]; ribosome [GO:0005840]; mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; regulation of translational fidelity [GO:0006450]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735] GO:0000028; GO:0003729; GO:0003735; GO:0005840; GO:0006412; GO:0006450; GO:0019843; GO:0022627
TRINITY_DN1447_c0_g1_i28 0 31 0 124 sp P33188 TBB1_PARTE 93.6 437 28 0 61 1371 1 437 7.3e-249 861.3 TBB1_PARTE reviewed Tubulin beta chain (Beta-tubulin) bPT2 GSPATT00021361001; bPT3 GSPATT00036831001 Paramecium tetraurelia 442 microtubule-based process [GO:0007017]; microtubule cytoskeleton organization [GO:0000226]; mitotic cell cycle [GO:0000278] cytoplasm [GO:0005737]; microtubule [GO:0005874] cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule cytoskeleton organization [GO:0000226]; microtubule-based process [GO:0007017]; mitotic cell cycle [GO:0000278] GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200] GO:0000226; GO:0000278; GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017
TRINITY_DN90_c1_g1_i1 0 3 0 234 sp Q9LT78 RD21C_ARATH 41.5 313 164 8 127 1041 43 344 7.4e-59 229.6 RD21C_ARATH reviewed Probable cysteine protease RD21C (EC 3.4.22.-) RD21C At3g19390 MLD14.12 Arabidopsis thaliana (Mouse-ear cress) 452 proteolysis involved in cellular protein catabolic process [GO:0051603] extracellular space [GO:0005615]; lysosome [GO:0005764] extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] cysteine-type endopeptidase activity [GO:0004197] GO:0004197; GO:0005615; GO:0005764; GO:0051603
TRINITY_DN90_c1_g1_i3 0 68 0 118 sp Q9LT78 RD21C_ARATH 41.9 313 163 8 127 1041 43 344 1.8e-59 231.5 RD21C_ARATH reviewed Probable cysteine protease RD21C (EC 3.4.22.-) RD21C At3g19390 MLD14.12 Arabidopsis thaliana (Mouse-ear cress) 452 proteolysis involved in cellular protein catabolic process [GO:0051603] extracellular space [GO:0005615]; lysosome [GO:0005764] extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] cysteine-type endopeptidase activity [GO:0004197] GO:0004197; GO:0005615; GO:0005764; GO:0051603
TRINITY_DN12521_c0_g1_i1 0 34 0 179 sp Q9FNU2 AB25B_ORYSJ 38.3 627 359 8 429 2297 25 627 4.6e-104 380.6 AB25B_ORYSJ reviewed ABC transporter B family member 25 (ABC transporter ABCB.25) (OsABCB25) (Protein ALS1 homolog) (Protein ALUMINUM SENSITIVE 1) (OsALS1) ABCB25 ALS1 Os03g0755100 LOC_Os03g54790 OSJNBb0081K01.19 Oryza sativa subsp. japonica (Rice) 641 aluminum ion transmembrane transport [GO:1902602]; cellular aluminum ion homeostasis [GO:0010217]; response to aluminum ion [GO:0010044]; transmembrane transport [GO:0055085] integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705] integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]; aluminum ion transmembrane transporter activity [GO:0015083]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; ATPase-coupled transmembrane transporter activity [GO:0042626]; aluminum ion transmembrane transport [GO:1902602]; cellular aluminum ion homeostasis [GO:0010217]; response to aluminum ion [GO:0010044]; transmembrane transport [GO:0055085] aluminum ion transmembrane transporter activity [GO:0015083]; ATPase activity [GO:0016887]; ATPase-coupled transmembrane transporter activity [GO:0042626]; ATP binding [GO:0005524] GO:0005524; GO:0009705; GO:0010044; GO:0010217; GO:0015083; GO:0016021; GO:0016887; GO:0042626; GO:0055085; GO:1902602
TRINITY_DN2510_c0_g2_i2 0 73 0 124 sp P39981 AVT2_YEAST 24.4 401 257 14 175 1332 58 427 1.9e-10 70.1 AVT2_YEAST reviewed Vacuolar amino acid transporter 2 AVT2 YEL064C Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 480 amino acid transmembrane transport [GO:0003333] endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774] endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333] amino acid transmembrane transporter activity [GO:0015171] GO:0003333; GO:0005774; GO:0005783; GO:0015171; GO:0016021
TRINITY_DN12706_c0_g1_i2 0 49 0 166 sp P21342 PFPA_SOLTU 33.4 527 333 8 2287 3837 89 607 5.5e-90 334.7 PFPA_SOLTU reviewed Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha (PFP) (6-phosphofructokinase, pyrophosphate dependent) (PPi-PFK) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) PFP-ALPHA PGSC0003DMG400010007 Solanum tuberosum (Potato) 616 cytoplasm [GO:0005737] cytoplasm [GO:0005737]; 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; diphosphate-fructose-6-phosphate 1-phosphotransferase activity [GO:0047334]; metal ion binding [GO:0046872] 6-phosphofructokinase activity [GO:0003872]; ATP binding [GO:0005524]; diphosphate-fructose-6-phosphate 1-phosphotransferase activity [GO:0047334]; metal ion binding [GO:0046872] GO:0003872; GO:0005524; GO:0005737; GO:0046872; GO:0047334
TRINITY_DN5410_c0_g1_i10 0 11 0 160 sp F4ILR7 DEXH1_ARATH 32.2 798 494 14 660 3026 216 975 8.7e-112 406.8 DEXH1_ARATH reviewed DExH-box ATP-dependent RNA helicase DExH1 (EC 3.6.4.13) At2g35920 F11F19.17 Arabidopsis thaliana (Mouse-ear cress) 995 nucleus [GO:0005634] nucleus [GO:0005634]; ATP binding [GO:0005524]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724] ATP binding [GO:0005524]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724] GO:0003723; GO:0003724; GO:0005524; GO:0005634
TRINITY_DN6834_c0_g1_i29 0 109 0 163 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN1670_c0_g1_i24 0 137 0 127 sp Q6PJP8 DCR1A_HUMAN 46.2 342 181 2 2201 3226 696 1034 2.4e-85 318.9 DCR1A_HUMAN reviewed DNA cross-link repair 1A protein (SNM1 homolog A) (hSNM1) (hSNM1A) DCLRE1A KIAA0086 SNM1 SNM1A Homo sapiens (Human) 1040 cell cycle [GO:0007049]; cell division [GO:0051301]; double-strand break repair via nonhomologous end joining [GO:0006303]; interstrand cross-link repair [GO:0036297]; protection from non-homologous end joining at telomere [GO:0031848] fibrillar center [GO:0001650]; nuclear chromosome, telomeric region [GO:0000784]; nucleoplasm [GO:0005654] fibrillar center [GO:0001650]; nuclear chromosome, telomeric region [GO:0000784]; nucleoplasm [GO:0005654]; 5'-3' exodeoxyribonuclease activity [GO:0035312]; damaged DNA binding [GO:0003684]; metal ion binding [GO:0046872]; cell cycle [GO:0007049]; cell division [GO:0051301]; double-strand break repair via nonhomologous end joining [GO:0006303]; interstrand cross-link repair [GO:0036297]; protection from non-homologous end joining at telomere [GO:0031848] 5'-3' exodeoxyribonuclease activity [GO:0035312]; damaged DNA binding [GO:0003684]; metal ion binding [GO:0046872] GO:0000784; GO:0001650; GO:0003684; GO:0005654; GO:0006303; GO:0007049; GO:0031848; GO:0035312; GO:0036297; GO:0046872; GO:0051301
TRINITY_DN336_c0_g1_i17 0 45 0 115 sp P90519 EF1A_CRYPV 43.5 469 231 8 33 1439 1 435 1.3e-100 368.6 EF1A_CRYPV reviewed Elongation factor 1-alpha (EF-1-alpha) Cryptosporidium parvum 435 cytoplasm [GO:0005737] cytoplasm [GO:0005737]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746] GTPase activity [GO:0003924]; GTP binding [GO:0005525]; translation elongation factor activity [GO:0003746] GO:0003746; GO:0003924; GO:0005525; GO:0005737
TRINITY_DN493_c0_g1_i11 0 47 0 72 sp P35684 RL3_ORYSJ 68.9 389 117 3 24 1181 1 388 7.1e-157 555.1 RL3_ORYSJ reviewed 60S ribosomal protein L3 RPL3 Os12g0167900 LOC_Os12g07010 Oryza sativa subsp. japonica (Rice) 389 ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625] cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0000027; GO:0003723; GO:0003735; GO:0006412; GO:0022625
TRINITY_DN5985_c0_g1_i3 0 42 0 77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN27990_c0_g1_i4 82 0 286 1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN5835_c0_g1_i1 0 39 0 78 sp Q5R814 PRP4B_PONAB 74.1 348 90 0 223 1266 660 1007 3e-156 553.1 PRP4B_PONAB reviewed Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1) (PRP4 pre-mRNA-processing factor 4 homolog) PRPF4B Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii) 1007 mRNA processing [GO:0006397]; RNA splicing [GO:0008380] spliceosomal complex [GO:0005681] spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] GO:0004674; GO:0005524; GO:0005681; GO:0006397; GO:0008380
TRINITY_DN12414_c1_g1_i4 0 31 0 97 sp Q5XHF8 VIP2_XENLA 26.6 920 543 31 132 2738 58 896 1.8e-73 279.3 VIP2_XENLA reviewed Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (EC 2.7.4.21) (EC 2.7.4.24) (Diphosphoinositol pentakisphosphate kinase 2) (Histidine acid phosphatase domain-containing protein 1) (InsP6 and PP-IP5 kinase 2) (VIP1 homolog 2) ppip5k2 hisppd1 vip2 Xenopus laevis (African clawed frog) 1131 inositol metabolic process [GO:0006020] cytosol [GO:0005829] cytosol [GO:0005829]; 5-diphosphoinositol pentakisphosphate 3-kinase activity [GO:0102092]; ATP binding [GO:0005524]; diphosphoinositol-pentakisphosphate kinase activity [GO:0033857]; inositol heptakisphosphate kinase activity [GO:0000829]; inositol hexakisphosphate 1-kinase activity [GO:0052723]; inositol hexakisphosphate 3-kinase activity [GO:0052724]; inositol hexakisphosphate 5-kinase activity [GO:0000832]; inositol-1,3,4,5,6-pentakisphosphate kinase activity [GO:0000827]; inositol metabolic process [GO:0006020] 5-diphosphoinositol pentakisphosphate 3-kinase activity [GO:0102092]; ATP binding [GO:0005524]; diphosphoinositol-pentakisphosphate kinase activity [GO:0033857]; inositol-1,3,4,5,6-pentakisphosphate kinase activity [GO:0000827]; inositol heptakisphosphate kinase activity [GO:0000829]; inositol hexakisphosphate 1-kinase activity [GO:0052723]; inositol hexakisphosphate 3-kinase activity [GO:0052724]; inositol hexakisphosphate 5-kinase activity [GO:0000832] GO:0000827; GO:0000829; GO:0000832; GO:0005524; GO:0005829; GO:0006020; GO:0033857; GO:0052723; GO:0052724; GO:0102092
TRINITY_DN27659_c0_g1_i1 0 43 0 106 sp P27484 GRP2_NICSY 56.6 76 32 1 72 299 8 82 3.4e-15 83.6 GRP2_NICSY reviewed Glycine-rich protein 2 GRP-2 Nicotiana sylvestris (Wood tobacco) (South American tobacco) 214 RNA binding [GO:0003723]; zinc ion binding [GO:0008270] RNA binding [GO:0003723]; zinc ion binding [GO:0008270] GO:0003723; GO:0008270
TRINITY_DN1447_c0_g1_i22 0 56 0 148 sp P33188 TBB1_PARTE 93.6 437 28 0 61 1371 1 437 7.6e-249 861.3 TBB1_PARTE reviewed Tubulin beta chain (Beta-tubulin) bPT2 GSPATT00021361001; bPT3 GSPATT00036831001 Paramecium tetraurelia 442 microtubule-based process [GO:0007017]; microtubule cytoskeleton organization [GO:0000226]; mitotic cell cycle [GO:0000278] cytoplasm [GO:0005737]; microtubule [GO:0005874] cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule cytoskeleton organization [GO:0000226]; microtubule-based process [GO:0007017]; mitotic cell cycle [GO:0000278] GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200] GO:0000226; GO:0000278; GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017
TRINITY_DN90_c1_g1_i5 0 92 0 144 sp Q9LT78 RD21C_ARATH 41.5 313 164 8 148 1062 43 344 7.6e-59 229.6 RD21C_ARATH reviewed Probable cysteine protease RD21C (EC 3.4.22.-) RD21C At3g19390 MLD14.12 Arabidopsis thaliana (Mouse-ear cress) 452 proteolysis involved in cellular protein catabolic process [GO:0051603] extracellular space [GO:0005615]; lysosome [GO:0005764] extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] cysteine-type endopeptidase activity [GO:0004197] GO:0004197; GO:0005615; GO:0005764; GO:0051603
TRINITY_DN377_c0_g1_i4 0 57 0 73 sp O77302 RS10_LUMRU 53.9 102 44 1 69 365 1 102 8.5e-25 115.2 RS10_LUMRU reviewed 40S ribosomal protein S10 RPS10 Lumbricus rubellus (Humus earthworm) 156 cytoplasm [GO:0005737]; ribosome [GO:0005840] cytoplasm [GO:0005737]; ribosome [GO:0005840] GO:0005737; GO:0005840
TRINITY_DN644_c0_g1_i5 0 82 0 144 sp P98158 LRP2_RAT 27.6 185 110 7 497 1042 2787 2950 1e-06 57.4 LRP2_RAT reviewed Low-density lipoprotein receptor-related protein 2 (LRP-2) (Glycoprotein 330) (gp330) (Megalin) Lrp2 Rattus norvegicus (Rat) 4660 aging [GO:0007568]; amyloid-beta clearance [GO:0097242]; animal organ regeneration [GO:0031100]; aorta development [GO:0035904]; cell population proliferation [GO:0008283]; cellular response to growth factor stimulus [GO:0071363]; chemoattraction of axon [GO:0061642]; coronary artery morphogenesis [GO:0060982]; coronary vasculature development [GO:0060976]; endocytic hemoglobin import into cell [GO:0020028]; endocytosis [GO:0006897]; endosomal transport [GO:0016197]; folate import across plasma membrane [GO:1904447]; forebrain development [GO:0030900]; heart development [GO:0007507]; hormone secretion [GO:0046879]; male gonad development [GO:0008584]; metal ion transport [GO:0030001]; negative regulation of apoptotic process [GO:0043066]; negative regulation of BMP signaling pathway [GO:0030514]; negative regulation of endopeptidase activity [GO:0010951]; neural tube closure [GO:0001843]; neuron projection arborization [GO:0140058]; outflow tract septum morphogenesis [GO:0003148]; positive regulation of endocytosis [GO:0045807]; positive regulation of lipoprotein transport [GO:0140077]; positive regulation of neurogenesis [GO:0050769]; positive regulation of oligodendrocyte progenitor proliferation [GO:0070447]; positive regulation of protein kinase B signaling [GO:0051897]; protein transport [GO:0015031]; pulmonary artery morphogenesis [GO:0061156]; receptor-mediated endocytosis [GO:0006898]; response to drug [GO:0042493]; response to leptin [GO:0044321]; response to retinoic acid [GO:0032526]; response to vitamin D [GO:0033280]; response to X-ray [GO:0010165]; secondary heart field specification [GO:0003139]; sensory perception of sound [GO:0007605]; transcytosis [GO:0045056]; vagina development [GO:0060068]; ventricular compact myocardium morphogenesis [GO:0003223]; ventricular septum development [GO:0003281]; vitamin metabolic process [GO:0006766] apical part of cell [GO:0045177]; apical plasma membrane [GO:0016324]; axon [GO:0030424]; axonal growth cone [GO:0044295]; brush border [GO:0005903]; brush border membrane [GO:0031526]; cell surface [GO:0009986]; clathrin-coated pit [GO:0005905]; cytoplasm [GO:0005737]; dendrite [GO:0030425]; endocytic vesicle [GO:0030139]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; endosome lumen [GO:0031904]; external side of plasma membrane [GO:0009897]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; membrane raft [GO:0045121]; plasma membrane [GO:0005886]; protein-containing complex [GO:0032991]; receptor complex [GO:0043235] apical part of cell [GO:0045177]; apical plasma membrane [GO:0016324]; axon [GO:0030424]; axonal growth cone [GO:0044295]; brush border [GO:0005903]; brush border membrane [GO:0031526]; cell surface [GO:0009986]; clathrin-coated pit [GO:0005905]; cytoplasm [GO:0005737]; dendrite [GO:0030425]; endocytic vesicle [GO:0030139]; endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; endosome lumen [GO:0031904]; external side of plasma membrane [GO:0009897]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; membrane raft [GO:0045121]; plasma membrane [GO:0005886]; protein-containing complex [GO:0032991]; receptor complex [GO:0043235]; calcium ion binding [GO:0005509]; chaperone binding [GO:0051087]; drug binding [GO:0008144]; hemoglobin binding [GO:0030492]; hormone binding [GO:0042562]; insulin-like growth factor I binding [GO:0031994]; low-density lipoprotein particle receptor binding [GO:0050750]; PDZ domain binding [GO:0030165]; protein transporter activity [GO:0140318]; protein-containing complex binding [GO:0044877]; SH3 domain binding [GO:0017124]; signaling receptor activity [GO:0038023]; steroid hormone receptor binding [GO:0035258]; aging [GO:0007568]; amyloid-beta clearance [GO:0097242]; animal organ regeneration [GO:0031100]; aorta development [GO:0035904]; cell population proliferation [GO:0008283]; cellular response to growth factor stimulus [GO:0071363]; chemoattraction of axon [GO:0061642]; coronary artery morphogenesis [GO:0060982]; coronary vasculature development [GO:0060976]; endocytic hemoglobin import into cell [GO:0020028]; endocytosis [GO:0006897]; endosomal transport [GO:0016197]; folate import across plasma membrane [GO:1904447]; forebrain development [GO:0030900]; heart development [GO:0007507]; hormone secretion [GO:0046879]; male gonad development [GO:0008584]; metal ion transport [GO:0030001]; negative regulation of apoptotic process [GO:0043066]; negative regulation of BMP signaling pathway [GO:0030514]; negative regulation of endopeptidase activity [GO:0010951]; neural tube closure [GO:0001843]; neuron projection arborization [GO:0140058]; outflow tract septum morphogenesis [GO:0003148]; positive regulation of endocytosis [GO:0045807]; positive regulation of lipoprotein transport [GO:0140077]; positive regulation of neurogenesis [GO:0050769]; positive regulation of oligodendrocyte progenitor proliferation [GO:0070447]; positive regulation of protein kinase B signaling [GO:0051897]; protein transport [GO:0015031]; pulmonary artery morphogenesis [GO:0061156]; receptor-mediated endocytosis [GO:0006898]; response to drug [GO:0042493]; response to leptin [GO:0044321]; response to retinoic acid [GO:0032526]; response to vitamin D [GO:0033280]; response to X-ray [GO:0010165]; secondary heart field specification [GO:0003139]; sensory perception of sound [GO:0007605]; transcytosis [GO:0045056]; vagina development [GO:0060068]; ventricular compact myocardium morphogenesis [GO:0003223]; ventricular septum development [GO:0003281]; vitamin metabolic process [GO:0006766] calcium ion binding [GO:0005509]; chaperone binding [GO:0051087]; drug binding [GO:0008144]; hemoglobin binding [GO:0030492]; hormone binding [GO:0042562]; insulin-like growth factor I binding [GO:0031994]; low-density lipoprotein particle receptor binding [GO:0050750]; PDZ domain binding [GO:0030165]; protein-containing complex binding [GO:0044877]; protein transporter activity [GO:0140318]; SH3 domain binding [GO:0017124]; signaling receptor activity [GO:0038023]; steroid hormone receptor binding [GO:0035258] GO:0001843; GO:0003139; GO:0003148; GO:0003223; GO:0003281; GO:0005509; GO:0005615; GO:0005737; GO:0005768; GO:0005783; GO:0005794; GO:0005886; GO:0005903; GO:0005905; GO:0006766; GO:0006897; GO:0006898; GO:0007507; GO:0007568; GO:0007605; GO:0008144; GO:0008283; GO:0008584; GO:0009897; GO:0009986; GO:0010165; GO:0010951; GO:0015031; GO:0016020; GO:0016021; GO:0016197; GO:0016324; GO:0017124; GO:0020028; GO:0030001; GO:0030139; GO:0030165; GO:0030424; GO:0030425; GO:0030492; GO:0030514; GO:0030900; GO:0031100; GO:0031526; GO:0031904; GO:0031994; GO:0032526; GO:0032991; GO:0033280; GO:0035258; GO:0035904; GO:0038023; GO:0042493; GO:0042562; GO:0043066; GO:0043235; GO:0044295; GO:0044321; GO:0044877; GO:0045056; GO:0045121; GO:0045177; GO:0045807; GO:0046879; GO:0050750; GO:0050769; GO:0051087; GO:0051897; GO:0060068; GO:0060976; GO:0060982; GO:0061156; GO:0061642; GO:0070447; GO:0071363; GO:0097242; GO:0140058; GO:0140077; GO:0140318; GO:1904447
TRINITY_DN2038_c1_g1_i1 0 53 0 72 sp P0CT60 RL23A_SCHPO 71.9 139 38 1 45 458 1 139 9.3e-50 198.4 RL23A_SCHPO reviewed 60S ribosomal protein L23-A rpl2301 rpl23 rpl23a SPAC3G9.03 Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 139 cytoplasmic translation [GO:0002181] cytosolic large ribosomal subunit [GO:0022625]; nucleus [GO:0005634] cytosolic large ribosomal subunit [GO:0022625]; nucleus [GO:0005634]; large ribosomal subunit rRNA binding [GO:0070180]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181] large ribosomal subunit rRNA binding [GO:0070180]; structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003735; GO:0005634; GO:0022625; GO:0070180
TRINITY_DN1863_c0_g1_i19 0 27 0 133 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN2510_c0_g1_i10 0 25 0 103 sp Q5HZH7 S38A8_MOUSE 25.9 386 248 11 285 1418 31 386 9.8e-22 106.7 S38A8_MOUSE reviewed Putative sodium-coupled neutral amino acid transporter 8 (Solute carrier family 38 member 8) Slc38a8 Gm587 Mus musculus (Mouse) 432 amino acid transmembrane transport [GO:0003333]; sodium ion transport [GO:0006814] integral component of membrane [GO:0016021] integral component of membrane [GO:0016021]; amino acid transmembrane transporter activity [GO:0015171]; amino acid transmembrane transport [GO:0003333]; sodium ion transport [GO:0006814] amino acid transmembrane transporter activity [GO:0015171] GO:0003333; GO:0006814; GO:0015171; GO:0016021
TRINITY_DN16305_c0_g1_i2 0 46 0 72 sp Q55C77 FCL_DICDI 53.8 312 140 3 55 981 10 320 8.1e-101 369 FCL_DICDI reviewed GDP-L-fucose synthase (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase) ger DDB_G0270184 Dictyostelium discoideum (Slime mold) 320 'de novo' GDP-L-fucose biosynthetic process [GO:0042351] GDP-L-fucose synthase activity [GO:0050577]; isomerase activity [GO:0016853]; 'de novo' GDP-L-fucose biosynthetic process [GO:0042351] GDP-L-fucose synthase activity [GO:0050577]; isomerase activity [GO:0016853] GO:0016853; GO:0042351; GO:0050577
TRINITY_DN10730_c0_g1_i1 0 78 0 171 sp Q9VKK2 WDR59_DROME 34.6 78 42 2 1532 1765 889 957 5.7e-06 54.3 WDR59_DROME reviewed GATOR complex protein Wdr59 Wdr59 CG4705 Drosophila melanogaster (Fruit fly) 969 cellular response to amino acid starvation [GO:0034198]; positive regulation of TOR signaling [GO:0032008] GATOR2 complex [GO:0061700]; Seh1-associated complex [GO:0035859] GATOR2 complex [GO:0061700]; Seh1-associated complex [GO:0035859]; cellular response to amino acid starvation [GO:0034198]; positive regulation of TOR signaling [GO:0032008] GO:0032008; GO:0034198; GO:0035859; GO:0061700
TRINITY_DN22802_c0_g1_i1 0 45 0 134 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN6978_c0_g1_i10 0 47 0 77 sp P43508 CPR4_CAEEL 34.3 289 149 11 140 943 67 335 7.8e-37 158.3 CPR4_CAEEL reviewed Cathepsin B-like cysteine proteinase 4 (EC 3.4.22.-) (Cysteine protease-related 4) cpr-4 F44C4.3 Caenorhabditis elegans 335 cellular response to gamma radiation [GO:0071480]; cellular response to UV [GO:0034644]; proteolysis involved in cellular protein catabolic process [GO:0051603] extracellular region [GO:0005576]; extracellular space [GO:0005615]; lysosome [GO:0005764] extracellular region [GO:0005576]; extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; cellular response to gamma radiation [GO:0071480]; cellular response to UV [GO:0034644]; proteolysis involved in cellular protein catabolic process [GO:0051603] cysteine-type endopeptidase activity [GO:0004197] GO:0004197; GO:0005576; GO:0005615; GO:0005764; GO:0034644; GO:0051603; GO:0071480
TRINITY_DN5341_c0_g1_i3 384 10 852 73 sp Q6DH69 FAH2A_DANRE 36.3 135 83 1 201 596 391 525 6.5e-15 82.8 FAH2A_DANRE reviewed Fatty-acid amide hydrolase 2-A (EC 3.5.1.99) faah2a zgc:92625 Danio rerio (Zebrafish) (Brachydanio rerio) 532 lipid catabolic process [GO:0016042] integral component of membrane [GO:0016021] integral component of membrane [GO:0016021]; anandamide amidohydrolase activity [GO:0103073]; oleamide hydrolase activity [GO:0102077]; lipid catabolic process [GO:0016042] anandamide amidohydrolase activity [GO:0103073]; oleamide hydrolase activity [GO:0102077] GO:0016021; GO:0016042; GO:0102077; GO:0103073
TRINITY_DN6524_c0_g1_i16 0 88 0 102 sp Q8SX83 SPEN_DROME 56.5 184 77 1 9725 10267 5376 5559 8.4e-48 196.1 SPEN_DROME reviewed Protein split ends spen CG18497 Drosophila melanogaster (Fruit fly) 5560 axon guidance [GO:0007411]; compound eye development [GO:0048749]; defense response to fungus [GO:0050832]; epidermal growth factor receptor signaling pathway [GO:0007173]; establishment of thoracic bristle planar orientation [GO:0048106]; glial cell fate determination [GO:0007403]; imaginal disc-derived wing vein morphogenesis [GO:0008586]; maintenance of imaginal disc-derived wing hair orientation [GO:0035321]; neuroblast fate determination [GO:0007400]; peripheral nervous system development [GO:0007422]; positive regulation of canonical Wnt signaling pathway [GO:0090263]; regulation of transcription, DNA-templated [GO:0006355]; segment specification [GO:0007379]; transcription, DNA-templated [GO:0006351]; wing disc pattern formation [GO:0035222] nucleus [GO:0005634] nucleus [GO:0005634]; RNA binding [GO:0003723]; axon guidance [GO:0007411]; compound eye development [GO:0048749]; defense response to fungus [GO:0050832]; epidermal growth factor receptor signaling pathway [GO:0007173]; establishment of thoracic bristle planar orientation [GO:0048106]; glial cell fate determination [GO:0007403]; imaginal disc-derived wing vein morphogenesis [GO:0008586]; maintenance of imaginal disc-derived wing hair orientation [GO:0035321]; neuroblast fate determination [GO:0007400]; peripheral nervous system development [GO:0007422]; positive regulation of canonical Wnt signaling pathway [GO:0090263]; regulation of transcription, DNA-templated [GO:0006355]; segment specification [GO:0007379]; transcription, DNA-templated [GO:0006351]; wing disc pattern formation [GO:0035222] RNA binding [GO:0003723] GO:0003723; GO:0005634; GO:0006351; GO:0006355; GO:0007173; GO:0007379; GO:0007400; GO:0007403; GO:0007411; GO:0007422; GO:0008586; GO:0035222; GO:0035321; GO:0048106; GO:0048749; GO:0050832; GO:0090263
TRINITY_DN1469_c0_g1_i14 0 26 0 161 sp Q9TW32 PPIB_DICDI 75 168 42 0 113 616 30 197 1e-70 268.5 PPIB_DICDI reviewed Peptidyl-prolyl cis-trans isomerase B (PPIase B) (EC 5.2.1.8) (Cyclophilin B) (Rotamase B) cypB cyp2 DDB_G0269120 Dictyostelium discoideum (Slime mold) 197 protein folding [GO:0006457]; protein peptidyl-prolyl isomerization [GO:0000413] cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; intracellular membrane-bounded organelle [GO:0043231] cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; intracellular membrane-bounded organelle [GO:0043231]; cyclosporin A binding [GO:0016018]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457]; protein peptidyl-prolyl isomerization [GO:0000413] cyclosporin A binding [GO:0016018]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755] GO:0000413; GO:0003755; GO:0005737; GO:0005783; GO:0006457; GO:0016018; GO:0043231
TRINITY_DN14_c0_g1_i18 0 49 0 67 sp Q7ZVR8 ESRP2_DANRE 32.9 328 188 10 53 1000 225 532 3.7e-34 147.9 ESRP2_DANRE reviewed Epithelial splicing regulatory protein 2 (RNA-binding motif protein 35B) (RNA-binding protein 35B) esrp2 rbm35b zgc:77254 Danio rerio (Zebrafish) (Brachydanio rerio) 736 mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; RNA splicing [GO:0008380] nucleoplasm [GO:0005654]; nucleus [GO:0005634] nucleoplasm [GO:0005654]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; RNA splicing [GO:0008380] mRNA binding [GO:0003729]; RNA binding [GO:0003723] GO:0003723; GO:0003729; GO:0005634; GO:0005654; GO:0006397; GO:0008380; GO:0043484
TRINITY_DN13049_c0_g1_i10 0 35 0 85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN13413_c0_g1_i8 59 0 68 0 sp Q2F637 1433Z_BOMMO 94.2 137 8 0 140 550 4 140 3.7e-63 245.4 1433Z_BOMMO reviewed 14-3-3 protein zeta 14-3-3zeta Bombyx mori (Silk moth) 247 cytoplasm [GO:0005737] cytoplasm [GO:0005737] GO:0005737
TRINITY_DN29271_c0_g1_i23 106 1 175 0 sp Q13127 REST_HUMAN 27 159 87 5 7109 7558 250 388 3e-07 61.6 REST_HUMAN reviewed RE1-silencing transcription factor (Neural-restrictive silencer factor) (X2 box repressor) REST NRSF XBR Homo sapiens (Human) 1097 auditory receptor cell stereocilium organization [GO:0060088]; cardiac muscle cell myoblast differentiation [GO:0060379]; cellular response to drug [GO:0035690]; cellular response to electrical stimulus [GO:0071257]; cellular response to glucocorticoid stimulus [GO:0071385]; detection of mechanical stimulus involved in sensory perception of sound [GO:0050910]; hematopoietic progenitor cell differentiation [GO:0002244]; histone H4 deacetylation [GO:0070933]; modification of synaptic structure [GO:0099563]; negative regulation by host of viral transcription [GO:0043922]; negative regulation of aldosterone biosynthetic process [GO:0032348]; negative regulation of amniotic stem cell differentiation [GO:2000798]; negative regulation of calcium ion-dependent exocytosis [GO:0045955]; negative regulation of cell population proliferation [GO:0008285]; negative regulation of cortisol biosynthetic process [GO:2000065]; negative regulation of dense core granule biogenesis [GO:2000706]; negative regulation of gene expression [GO:0010629]; negative regulation of insulin secretion [GO:0046676]; negative regulation of mesenchymal stem cell differentiation [GO:2000740]; negative regulation of neurogenesis [GO:0050768]; negative regulation of neuron differentiation [GO:0045665]; negative regulation of oxidative stress-induced neuron death [GO:1903204]; negative regulation of transcription, DNA-templated [GO:0045892]; negative regulation of transcription by RNA polymerase II [GO:0000122]; negative regulation of transcription regulatory region DNA binding [GO:2000678]; neuromuscular process controlling balance [GO:0050885]; neuronal stem cell population maintenance [GO:0097150]; positive regulation of apoptotic process [GO:0043065]; positive regulation of cysteine-type endopeptidase activity involved in apoptotic process [GO:0043280]; positive regulation of gene expression [GO:0010628]; positive regulation of neuron differentiation [GO:0045666]; positive regulation of oxidative stress-induced neuron death [GO:1903223]; positive regulation of stem cell population maintenance [GO:1902459]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of gene expression [GO:0010468]; regulation of osteoblast differentiation [GO:0045667]; regulation of oxidative stress-induced neuron death [GO:1903203]; regulation of transcription, DNA-templated [GO:0006355]; response to hypoxia [GO:0001666]; response to ischemia [GO:0002931]; somatic stem cell population maintenance [GO:0035019] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; transcription repressor complex [GO:0017053] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; transcription repressor complex [GO:0017053]; chromatin binding [GO:0003682]; DNA-binding transcription factor activity [GO:0003700]; DNA-binding transcription repressor activity, RNA polymerase II-specific [GO:0001227]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO:0000978]; RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979]; transcription factor binding [GO:0008134]; transcription regulatory region sequence-specific DNA binding [GO:0000976]; auditory receptor cell stereocilium organization [GO:0060088]; cardiac muscle cell myoblast differentiation [GO:0060379]; cellular response to drug [GO:0035690]; cellular response to electrical stimulus [GO:0071257]; cellular response to glucocorticoid stimulus [GO:0071385]; detection of mechanical stimulus involved in sensory perception of sound [GO:0050910]; hematopoietic progenitor cell differentiation [GO:0002244]; histone H4 deacetylation [GO:0070933]; modification of synaptic structure [GO:0099563]; negative regulation by host of viral transcription [GO:0043922]; negative regulation of aldosterone biosynthetic process [GO:0032348]; negative regulation of amniotic stem cell differentiation [GO:2000798]; negative regulation of calcium ion-dependent exocytosis [GO:0045955]; negative regulation of cell population proliferation [GO:0008285]; negative regulation of cortisol biosynthetic process [GO:2000065]; negative regulation of dense core granule biogenesis [GO:2000706]; negative regulation of gene expression [GO:0010629]; negative regulation of insulin secretion [GO:0046676]; negative regulation of mesenchymal stem cell differentiation [GO:2000740]; negative regulation of neurogenesis [GO:0050768]; negative regulation of neuron differentiation [GO:0045665]; negative regulation of oxidative stress-induced neuron death [GO:1903204]; negative regulation of transcription by RNA polymerase II [GO:0000122]; negative regulation of transcription regulatory region DNA binding [GO:2000678]; negative regulation of transcription, DNA-templated [GO:0045892]; neuromuscular process controlling balance [GO:0050885]; neuronal stem cell population maintenance [GO:0097150]; positive regulation of apoptotic process [GO:0043065]; positive regulation of cysteine-type endopeptidase activity involved in apoptotic process [GO:0043280]; positive regulation of gene expression [GO:0010628]; positive regulation of neuron differentiation [GO:0045666]; positive regulation of oxidative stress-induced neuron death [GO:1903223]; positive regulation of stem cell population maintenance [GO:1902459]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of gene expression [GO:0010468]; regulation of osteoblast differentiation [GO:0045667]; regulation of oxidative stress-induced neuron death [GO:1903203]; regulation of transcription, DNA-templated [GO:0006355]; response to hypoxia [GO:0001666]; response to ischemia [GO:0002931]; somatic stem cell population maintenance [GO:0035019] chromatin binding [GO:0003682]; DNA-binding transcription factor activity [GO:0003700]; DNA-binding transcription repressor activity, RNA polymerase II-specific [GO:0001227]; identical protein binding [GO:0042802]; metal ion binding [GO:0046872]; RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO:0000978]; RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979]; transcription factor binding [GO:0008134]; transcription regulatory region sequence-specific DNA binding [GO:0000976] GO:0000122; GO:0000381; GO:0000976; GO:0000978; GO:0000979; GO:0001227; GO:0001666; GO:0002244; GO:0002931; GO:0003682; GO:0003700; GO:0005634; GO:0005654; GO:0005737; GO:0005829; GO:0006355; GO:0008134; GO:0008285; GO:0010468; GO:0010628; GO:0010629; GO:0017053; GO:0032348; GO:0035019; GO:0035690; GO:0042802; GO:0043065; GO:0043280; GO:0043922; GO:0045665; GO:0045666; GO:0045667; GO:0045892; GO:0045893; GO:0045955; GO:0046676; GO:0046872; GO:0050768; GO:0050885; GO:0050910; GO:0060088; GO:0060379; GO:0070933; GO:0071257; GO:0071385; GO:0097150; GO:0099563; GO:1902459; GO:1903203; GO:1903204; GO:1903223; GO:2000065; GO:2000678; GO:2000706; GO:2000740; GO:2000798
TRINITY_DN2470_c0_g1_i1 1 382 5 269 sp B1A4F7 VDDP4_VESVU 36 786 474 13 1850 4186 8 771 1.6e-137 492.7 VDDP4_VESVU reviewed Venom dipeptidyl peptidase 4 (EC 3.4.14.5) (Venom dipeptidyl peptidase IV) (allergen Ves v 3) Vespula vulgaris (Yellow jacket) (Wasp) 776 extracellular region [GO:0005576] extracellular region [GO:0005576]; aminopeptidase activity [GO:0004177]; serine-type peptidase activity [GO:0008236] aminopeptidase activity [GO:0004177]; serine-type peptidase activity [GO:0008236] GO:0004177; GO:0005576; GO:0008236
TRINITY_DN1396_c0_g1_i1 0 94 0 118 sp Q9W5N2 RL38_DROME 58.6 70 29 0 29 238 1 70 1.9e-15 84 RL38_DROME reviewed 60S ribosomal protein L38 RpL38 CG18001 Drosophila melanogaster (Fruit fly) 70 cytoplasmic translation [GO:0002181]; ribonucleoprotein complex assembly [GO:0022618] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; ribonucleoprotein complex assembly [GO:0022618] structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003735; GO:0022618; GO:0022625; GO:0022626
TRINITY_DN14959_c1_g1_i27 24 0 218 0 sp P51610 HCFC1_HUMAN 73.6 402 101 3 64 1257 8 408 9.9e-189 662.9 HCFC1_HUMAN reviewed Host cell factor 1 (HCF) (HCF-1) (C1 factor) (CFF) (VCAF) (VP16 accessory protein) [Cleaved into: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6] HCFC1 HCF1 HFC1 Homo sapiens (Human) 2035 blastocyst hatching [GO:0001835]; cell cycle [GO:0007049]; cellular response to organic cyclic compound [GO:0071407]; chromatin remodeling [GO:0006338]; histone H4-K16 acetylation [GO:0043984]; histone H4-K5 acetylation [GO:0043981]; histone H4-K8 acetylation [GO:0043982]; mitochondrion organization [GO:0007005]; negative regulation of transcription by RNA polymerase II [GO:0000122]; positive regulation of cell cycle [GO:0045787]; positive regulation of gene expression [GO:0010628]; positive regulation of transcription, DNA-templated [GO:0045893]; protein deubiquitination [GO:0016579]; protein stabilization [GO:0050821]; regulation of protein-containing complex assembly [GO:0043254]; regulation of transcription, DNA-templated [GO:0006355]; release from viral latency [GO:0019046] axon [GO:0030424]; cytoplasm [GO:0005737]; dendrite [GO:0030425]; histone acetyltransferase complex [GO:0000123]; membrane [GO:0016020]; MLL1 complex [GO:0071339]; neuronal cell body [GO:0043025]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; protein-containing complex [GO:0032991]; Set1C/COMPASS complex [GO:0048188] axon [GO:0030424]; cytoplasm [GO:0005737]; dendrite [GO:0030425]; histone acetyltransferase complex [GO:0000123]; membrane [GO:0016020]; MLL1 complex [GO:0071339]; neuronal cell body [GO:0043025]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; protein-containing complex [GO:0032991]; Set1C/COMPASS complex [GO:0048188]; activating transcription factor binding [GO:0033613]; cadherin binding [GO:0045296]; chromatin binding [GO:0003682]; identical protein binding [GO:0042802]; protein-macromolecule adaptor activity [GO:0030674]; RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO:0000978]; transcription coactivator activity [GO:0003713]; transcription factor binding [GO:0008134]; blastocyst hatching [GO:0001835]; cell cycle [GO:0007049]; cellular response to organic cyclic compound [GO:0071407]; chromatin remodeling [GO:0006338]; histone H4-K16 acetylation [GO:0043984]; histone H4-K5 acetylation [GO:0043981]; histone H4-K8 acetylation [GO:0043982]; mitochondrion organization [GO:0007005]; negative regulation of transcription by RNA polymerase II [GO:0000122]; positive regulation of cell cycle [GO:0045787]; positive regulation of gene expression [GO:0010628]; positive regulation of transcription, DNA-templated [GO:0045893]; protein deubiquitination [GO:0016579]; protein stabilization [GO:0050821]; regulation of protein-containing complex assembly [GO:0043254]; regulation of transcription, DNA-templated [GO:0006355]; release from viral latency [GO:0019046] activating transcription factor binding [GO:0033613]; cadherin binding [GO:0045296]; chromatin binding [GO:0003682]; identical protein binding [GO:0042802]; protein-macromolecule adaptor activity [GO:0030674]; RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO:0000978]; transcription coactivator activity [GO:0003713]; transcription factor binding [GO:0008134] GO:0000122; GO:0000123; GO:0000978; GO:0001835; GO:0003682; GO:0003713; GO:0005634; GO:0005654; GO:0005737; GO:0006338; GO:0006355; GO:0007005; GO:0007049; GO:0008134; GO:0010628; GO:0016020; GO:0016579; GO:0019046; GO:0030424; GO:0030425; GO:0030674; GO:0032991; GO:0033613; GO:0042802; GO:0043025; GO:0043254; GO:0043981; GO:0043982; GO:0043984; GO:0045296; GO:0045787; GO:0045893; GO:0048188; GO:0050821; GO:0071339; GO:0071407
TRINITY_DN1736_c0_g1_i14 0 45 0 97 sp Q8TDY2 RBCC1_HUMAN 38 92 50 2 282 545 1504 1592 3.4e-09 66.2 RBCC1_HUMAN reviewed RB1-inducible coiled-coil protein 1 (FAK family kinase-interacting protein of 200 kDa) (FIP200) RB1CC1 KIAA0203 RBICC Homo sapiens (Human) 1594 autophagosome assembly [GO:0000045]; autophagy [GO:0006914]; autophagy of mitochondrion [GO:0000422]; autophagy of peroxisome [GO:0030242]; cell cycle [GO:0007049]; glycophagy [GO:0061723]; heart development [GO:0007507]; liver development [GO:0001889]; macroautophagy [GO:0016236]; negative regulation of extrinsic apoptotic signaling pathway [GO:2001237]; piecemeal microautophagy of the nucleus [GO:0034727]; positive regulation of cell size [GO:0045793]; positive regulation of JNK cascade [GO:0046330]; positive regulation of protein phosphorylation [GO:0001934]; regulation of macroautophagy [GO:0016241]; reticulophagy [GO:0061709] Atg1/ULK1 kinase complex [GO:1990316]; cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; extrinsic component of membrane [GO:0019898]; lysosome [GO:0005764]; nuclear membrane [GO:0031965]; phagophore assembly site [GO:0000407]; phagophore assembly site membrane [GO:0034045] Atg1/ULK1 kinase complex [GO:1990316]; cytosol [GO:0005829]; endoplasmic reticulum membrane [GO:0005789]; extrinsic component of membrane [GO:0019898]; lysosome [GO:0005764]; nuclear membrane [GO:0031965]; phagophore assembly site [GO:0000407]; phagophore assembly site membrane [GO:0034045]; molecular adaptor activity [GO:0060090]; protein kinase binding [GO:0019901]; autophagosome assembly [GO:0000045]; autophagy [GO:0006914]; autophagy of mitochondrion [GO:0000422]; autophagy of peroxisome [GO:0030242]; cell cycle [GO:0007049]; glycophagy [GO:0061723]; heart development [GO:0007507]; liver development [GO:0001889]; macroautophagy [GO:0016236]; negative regulation of extrinsic apoptotic signaling pathway [GO:2001237]; piecemeal microautophagy of the nucleus [GO:0034727]; positive regulation of cell size [GO:0045793]; positive regulation of JNK cascade [GO:0046330]; positive regulation of protein phosphorylation [GO:0001934]; regulation of macroautophagy [GO:0016241]; reticulophagy [GO:0061709] molecular adaptor activity [GO:0060090]; protein kinase binding [GO:0019901] GO:0000045; GO:0000407; GO:0000422; GO:0001889; GO:0001934; GO:0005764; GO:0005789; GO:0005829; GO:0006914; GO:0007049; GO:0007507; GO:0016236; GO:0016241; GO:0019898; GO:0019901; GO:0030242; GO:0031965; GO:0034045; GO:0034727; GO:0045793; GO:0046330; GO:0060090; GO:0061709; GO:0061723; GO:1990316; GO:2001237
TRINITY_DN2992_c0_g1_i9 0 61 0 57 sp Q43292 RL372_ARATH 67.4 89 29 0 59 325 1 89 1.7e-28 127.5 RL372_ARATH reviewed 60S ribosomal protein L37-2 RPL37B At1g52300 F19K6.12 Arabidopsis thaliana (Mouse-ear cress) 95 translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] metal ion binding [GO:0046872]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735] GO:0003723; GO:0003735; GO:0005634; GO:0006412; GO:0019843; GO:0022625; GO:0022626; GO:0046872
TRINITY_DN13344_c0_g1_i1 0 43 0 101 sp Q9FPS4 UBP23_ARATH 34.5 177 94 7 159 635 108 280 3.1e-12 75.1 UBP23_ARATH reviewed Ubiquitin carboxyl-terminal hydrolase 23 (EC 3.4.19.12) (Deubiquitinating enzyme 23) (AtUBP23) (Ubiquitin thioesterase 23) (Ubiquitin-specific-processing protease 23) UBP23 At5g57990 MTI20.25 Arabidopsis thaliana (Mouse-ear cress) 859 protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] cytosol [GO:0005829]; nucleus [GO:0005634] cytosol [GO:0005829]; nucleus [GO:0005634]; cysteine-type endopeptidase activity [GO:0004197]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] cysteine-type endopeptidase activity [GO:0004197]; thiol-dependent ubiquitin-specific protease activity [GO:0004843] GO:0004197; GO:0004843; GO:0005634; GO:0005829; GO:0006511; GO:0016579
TRINITY_DN88138_c0_g1_i6 0 33 0 123 sp O88759 KCNS3_RAT 31.8 242 134 4 340 1017 187 413 6.8e-18 93.6 KCNS3_RAT reviewed Potassium voltage-gated channel subfamily S member 3 (Delayed-rectifier K(+) channel alpha subunit 3) (Voltage-gated potassium channel subunit Kv9.3) Kcns3 Rattus norvegicus (Rat) 491 potassium ion transmembrane transport [GO:0071805]; protein homooligomerization [GO:0051260]; regulation of ion transmembrane transport [GO:0034765] cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; voltage-gated potassium channel complex [GO:0008076] cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; voltage-gated potassium channel complex [GO:0008076]; voltage-gated potassium channel activity [GO:0005249]; potassium ion transmembrane transport [GO:0071805]; protein homooligomerization [GO:0051260]; regulation of ion transmembrane transport [GO:0034765] voltage-gated potassium channel activity [GO:0005249] GO:0005249; GO:0005794; GO:0005829; GO:0008076; GO:0016021; GO:0034765; GO:0051260; GO:0071805
TRINITY_DN18195_c0_g1_i1 0 38 0 102 sp Q9SZY1 NACA4_ARATH 55.3 150 61 1 171 602 63 212 5.6e-35 149.4 NACA4_ARATH reviewed Nascent polypeptide-associated complex subunit alpha-like protein 4 (NAC-alpha-like protein 4) (Alpha-NAC-like protein 4) At4g10480 F7L13.60 Arabidopsis thaliana (Mouse-ear cress) 212 protein targeting to membrane [GO:0006612] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nascent polypeptide-associated complex [GO:0005854] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nascent polypeptide-associated complex [GO:0005854]; unfolded protein binding [GO:0051082]; protein targeting to membrane [GO:0006612] unfolded protein binding [GO:0051082] GO:0005737; GO:0005829; GO:0005854; GO:0006612; GO:0051082
TRINITY_DN2751_c1_g2_i5 0 42 0 88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN9803_c0_g1_i1 0 59 0 125 sp B8AM21 RU2B_ORYSI 40.7 236 115 5 70 735 8 232 5e-37 156.4 RU2B_ORYSI reviewed U2 small nuclear ribonucleoprotein B'' (U2 snRNP B'') OsI_11177 Oryza sativa subsp. indica (Rice) 232 mRNA processing [GO:0006397]; RNA splicing [GO:0008380] Cajal body [GO:0015030]; cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; spliceosomal complex [GO:0005681]; U2 snRNP [GO:0005686] Cajal body [GO:0015030]; cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; spliceosomal complex [GO:0005681]; U2 snRNP [GO:0005686]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] RNA binding [GO:0003723] GO:0003723; GO:0005654; GO:0005681; GO:0005686; GO:0005737; GO:0006397; GO:0008380; GO:0015030
TRINITY_DN13456_c0_g1_i4 0 42 0 90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN493_c0_g1_i10 0 84 0 152 sp P35684 RL3_ORYSJ 68.4 380 116 3 2 1132 10 388 8e-152 538.1 RL3_ORYSJ reviewed 60S ribosomal protein L3 RPL3 Os12g0167900 LOC_Os12g07010 Oryza sativa subsp. japonica (Rice) 389 ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625] cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit assembly [GO:0000027]; translation [GO:0006412] RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0000027; GO:0003723; GO:0003735; GO:0006412; GO:0022625
TRINITY_DN205_c7_g1_i11 207 31 111 0 sp Q9VLS1 KPBB_DROME 68.2 730 218 2 314 2503 36 751 8.3e-294 1011.9 KPBB_DROME reviewed Probable phosphorylase b kinase regulatory subunit beta (Phosphorylase kinase subunit beta) CG8475 Drosophila melanogaster (Fruit fly) 1093 glycogen metabolic process [GO:0005977] phosphorylase kinase complex [GO:0005964]; plasma membrane [GO:0005886] phosphorylase kinase complex [GO:0005964]; plasma membrane [GO:0005886]; calmodulin binding [GO:0005516]; catalytic activity [GO:0003824]; glycogen metabolic process [GO:0005977] calmodulin binding [GO:0005516]; catalytic activity [GO:0003824] GO:0003824; GO:0005516; GO:0005886; GO:0005964; GO:0005977
TRINITY_DN2128_c0_g1_i8 0 100 0 226 sp P87262 RL34A_YEAST 47.9 119 61 1 42 395 3 121 1.4e-21 104.4 RL34A_YEAST reviewed 60S ribosomal protein L34-A (Large ribosomal subunit protein eL34-A) RPL34A YER056C-A YER056BC Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 121 cytoplasmic translation [GO:0002181]; ribosome biogenesis [GO:0042254] cytosolic large ribosomal subunit [GO:0022625]; preribosome, large subunit precursor [GO:0030687] cytosolic large ribosomal subunit [GO:0022625]; preribosome, large subunit precursor [GO:0030687]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; ribosome biogenesis [GO:0042254] structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003735; GO:0022625; GO:0030687; GO:0042254
TRINITY_DN108250_c0_g1_i1 0 85 0 100 sp Q9AT35 RL23A_DAUCA 55.4 148 64 1 45 482 7 154 5.5e-37 155.6 RL23A_DAUCA reviewed 60S ribosomal protein L23a RPL23A Daucus carota (Wild carrot) 154 translation [GO:0006412] ribosome [GO:0005840] ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005840; GO:0006412; GO:0019843
TRINITY_DN8979_c0_g1_i3 0 94 0 54 sp Q9P2K8 E2AK4_HUMAN 31.1 1718 991 44 396 5282 26 1639 1.7e-169 599.4 E2AK4_HUMAN reviewed eIF-2-alpha kinase GCN2 (EC 2.7.11.1) (Eukaryotic translation initiation factor 2-alpha kinase 4) (GCN2-like protein) EIF2AK4 GCN2 KIAA1338 Homo sapiens (Human) 1649 adaptive immune response [GO:0002250]; cell cycle arrest [GO:0007050]; cellular response to amino acid starvation [GO:0034198]; cellular response to cold [GO:0070417]; cellular response to leucine starvation [GO:1990253]; cellular response to UV [GO:0034644]; defense response to virus [GO:0051607]; DNA damage checkpoint [GO:0000077]; eiF2alpha phosphorylation in response to endoplasmic reticulum stress [GO:0036492]; induction by virus of host autophagy [GO:0039520]; learning [GO:0007612]; long-term memory [GO:0007616]; negative regulation by host of viral genome replication [GO:0044828]; negative regulation of CREB transcription factor activity [GO:0032792]; negative regulation of neuron differentiation [GO:0045665]; negative regulation of translational initiation [GO:0045947]; negative regulation of translational initiation in response to stress [GO:0032057]; neuron projection extension [GO:1990138]; positive regulation of adaptive immune response [GO:0002821]; positive regulation of defense response to virus by host [GO:0002230]; positive regulation of long-term synaptic potentiation [GO:1900273]; positive regulation of translational initiation in response to starvation [GO:0071264]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; regulation of eIF2 alpha phosphorylation by amino acid starvation [GO:0060733]; regulation of feeding behavior [GO:0060259]; regulation of translational initiation [GO:0006446]; regulation of translational initiation by eIF2 alpha phosphorylation [GO:0010998]; T cell activation involved in immune response [GO:0002286]; viral translation [GO:0019081] cytosolic ribosome [GO:0022626]; polysome [GO:0005844] cytosolic ribosome [GO:0022626]; polysome [GO:0005844]; ATP binding [GO:0005524]; eukaryotic translation initiation factor 2alpha kinase activity [GO:0004694]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; tRNA binding [GO:0000049]; adaptive immune response [GO:0002250]; cell cycle arrest [GO:0007050]; cellular response to amino acid starvation [GO:0034198]; cellular response to cold [GO:0070417]; cellular response to leucine starvation [GO:1990253]; cellular response to UV [GO:0034644]; defense response to virus [GO:0051607]; DNA damage checkpoint [GO:0000077]; eiF2alpha phosphorylation in response to endoplasmic reticulum stress [GO:0036492]; induction by virus of host autophagy [GO:0039520]; learning [GO:0007612]; long-term memory [GO:0007616]; negative regulation by host of viral genome replication [GO:0044828]; negative regulation of CREB transcription factor activity [GO:0032792]; negative regulation of neuron differentiation [GO:0045665]; negative regulation of translational initiation [GO:0045947]; negative regulation of translational initiation in response to stress [GO:0032057]; neuron projection extension [GO:1990138]; positive regulation of adaptive immune response [GO:0002821]; positive regulation of defense response to virus by host [GO:0002230]; positive regulation of long-term synaptic potentiation [GO:1900273]; positive regulation of translational initiation in response to starvation [GO:0071264]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; regulation of eIF2 alpha phosphorylation by amino acid starvation [GO:0060733]; regulation of feeding behavior [GO:0060259]; regulation of translational initiation [GO:0006446]; regulation of translational initiation by eIF2 alpha phosphorylation [GO:0010998]; T cell activation involved in immune response [GO:0002286]; viral translation [GO:0019081] ATP binding [GO:0005524]; eukaryotic translation initiation factor 2alpha kinase activity [GO:0004694]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; tRNA binding [GO:0000049] GO:0000049; GO:0000077; GO:0002230; GO:0002250; GO:0002286; GO:0002821; GO:0004672; GO:0004674; GO:0004694; GO:0005524; GO:0005844; GO:0006446; GO:0006468; GO:0007050; GO:0007612; GO:0007616; GO:0010998; GO:0019081; GO:0022626; GO:0032057; GO:0032792; GO:0034198; GO:0034644; GO:0036492; GO:0039520; GO:0044828; GO:0045665; GO:0045947; GO:0046777; GO:0051607; GO:0060259; GO:0060733; GO:0070417; GO:0071264; GO:1900273; GO:1990138; GO:1990253
TRINITY_DN336_c0_g1_i6 0 82 0 55 sp P90519 EF1A_CRYPV 43.9 469 229 7 48 1454 1 435 4.9e-102 373.6 EF1A_CRYPV reviewed Elongation factor 1-alpha (EF-1-alpha) Cryptosporidium parvum 435 cytoplasm [GO:0005737] cytoplasm [GO:0005737]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; translation elongation factor activity [GO:0003746] GTPase activity [GO:0003924]; GTP binding [GO:0005525]; translation elongation factor activity [GO:0003746] GO:0003746; GO:0003924; GO:0005525; GO:0005737
TRINITY_DN1667_c0_g1_i5 0 137 0 75 sp P0A9Y8 CSPC_ECO57 63.4 71 24 2 65 277 1 69 4.7e-16 87.4 CSPC_ECO57 reviewed Cold shock-like protein CspC (CSP-C) cspC Z2868 ECs2533 Escherichia coli O157:H7 69 cytoplasm [GO:0005737] cytoplasm [GO:0005737]; DNA binding [GO:0003677] DNA binding [GO:0003677] GO:0003677; GO:0005737
TRINITY_DN21885_c0_g1_i1 0 70 0 134 sp P0CM25 GET3_CRYNB 54.8 321 142 2 93 1052 5 323 1.5e-94 347.8 GET3_CRYNB reviewed ATPase GET3 (EC 3.6.-.-) (Arsenical pump-driving ATPase) (Arsenite-stimulated ATPase) (Golgi to ER traffic protein 3) (Guided entry of tail-anchored proteins 3) GET3 CNBK0900 Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (Filobasidiella neoformans) 325 protein insertion into ER membrane [GO:0045048] endoplasmic reticulum [GO:0005783] endoplasmic reticulum [GO:0005783]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; metal ion binding [GO:0046872]; protein insertion into ER membrane [GO:0045048] ATPase activity [GO:0016887]; ATP binding [GO:0005524]; metal ion binding [GO:0046872] GO:0005524; GO:0005783; GO:0016887; GO:0045048; GO:0046872
TRINITY_DN1838_c1_g2_i1 0 62 0 111 sp O94432 YHKF_SCHPO 36.6 216 98 5 465 1112 163 339 4.8e-29 130.6 YHKF_SCHPO reviewed Uncharacterized RNA-binding protein C660.15 SPBC660.15 Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 474 mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; regulation of RNA metabolic process [GO:0051252] cytoplasm [GO:0005737]; mRNA cleavage factor complex [GO:0005849]; nucleus [GO:0005634]; ribonucleoprotein complex [GO:1990904] cytoplasm [GO:0005737]; mRNA cleavage factor complex [GO:0005849]; nucleus [GO:0005634]; ribonucleoprotein complex [GO:1990904]; mRNA 3'-UTR binding [GO:0003730]; RNA binding [GO:0003723]; mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; regulation of RNA metabolic process [GO:0051252] mRNA 3'-UTR binding [GO:0003730]; RNA binding [GO:0003723] GO:0003723; GO:0003730; GO:0005634; GO:0005737; GO:0005849; GO:0006378; GO:0006379; GO:0051252; GO:1990904
TRINITY_DN332_c0_g2_i2 0 124 0 48 sp Q03043 KGP24_DROME 66.5 714 214 5 493 2619 395 1088 1.5e-270 934.9 KGP24_DROME reviewed cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B (cGK) (EC 2.7.11.12) (Foraging protein) for DG2 PGK2 Pkg24A CG10033 Drosophila melanogaster (Fruit fly) 1088 feeding behavior [GO:0007631]; habituation [GO:0046959]; larval feeding behavior [GO:0030536]; larval locomotory behavior [GO:0008345]; long-term memory [GO:0007616]; motor neuron axon guidance [GO:0008045]; protein phosphorylation [GO:0006468]; regulation of heart contraction [GO:0008016]; regulation of response to food [GO:0032095]; response to sucrose [GO:0009744]; short-term memory [GO:0007614] cytosol [GO:0005829]; plasma membrane [GO:0005886] cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; cGMP binding [GO:0030553]; cGMP-dependent protein kinase activity [GO:0004692]; feeding behavior [GO:0007631]; habituation [GO:0046959]; larval feeding behavior [GO:0030536]; larval locomotory behavior [GO:0008345]; long-term memory [GO:0007616]; motor neuron axon guidance [GO:0008045]; protein phosphorylation [GO:0006468]; regulation of heart contraction [GO:0008016]; regulation of response to food [GO:0032095]; response to sucrose [GO:0009744]; short-term memory [GO:0007614] ATP binding [GO:0005524]; cGMP binding [GO:0030553]; cGMP-dependent protein kinase activity [GO:0004692] GO:0004692; GO:0005524; GO:0005829; GO:0005886; GO:0006468; GO:0007614; GO:0007616; GO:0007631; GO:0008016; GO:0008045; GO:0008345; GO:0009744; GO:0030536; GO:0030553; GO:0032095; GO:0046959
TRINITY_DN2876_c0_g1_i4 77 0 41 0 sp Q9CYA6 ZCHC8_MOUSE 39.7 189 104 4 696 1238 222 408 2e-32 142.5 ZCHC8_MOUSE reviewed Zinc finger CCHC domain-containing protein 8 (TRAMP-like complex RNA-binding factor ZCCHC8) Zcchc8 Mus musculus (Mouse) 709 mRNA processing [GO:0006397]; ncRNA processing [GO:0034470]; RNA splicing [GO:0008380] catalytic step 2 spliceosome [GO:0071013]; nuclear body [GO:0016604]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; TRAMP complex [GO:0031499] catalytic step 2 spliceosome [GO:0071013]; nuclear body [GO:0016604]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; TRAMP complex [GO:0031499]; nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]; mRNA processing [GO:0006397]; ncRNA processing [GO:0034470]; RNA splicing [GO:0008380] nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] GO:0003676; GO:0005634; GO:0005654; GO:0006397; GO:0008270; GO:0008380; GO:0016604; GO:0031499; GO:0034470; GO:0071013
TRINITY_DN10685_c0_g1_i2 0 73 0 149 sp Q940B0 RL183_ARATH 61.1 193 69 1 36 614 1 187 1.3e-56 221.5 RL183_ARATH reviewed 60S ribosomal protein L18-3 RPL18C At5g27850 F14I23.10 Arabidopsis thaliana (Mouse-ear cress) 187 translation [GO:0006412] cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasmodesma [GO:0009506]; plastid [GO:0009536]; vacuole [GO:0005773] cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; plasmodesma [GO:0009506]; plastid [GO:0009536]; vacuole [GO:0005773]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0003723; GO:0003729; GO:0003735; GO:0005773; GO:0005829; GO:0006412; GO:0009506; GO:0009536; GO:0022625; GO:0022626
TRINITY_DN4168_c0_g1_i8 69 0 237 28 sp O24145 4CL1_TOBAC 34.5 516 318 9 259 1779 41 545 5.7e-73 276.9 4CL1_TOBAC reviewed 4-coumarate--CoA ligase 1 (4CL 1) (EC 6.2.1.12) (4-coumaroyl-CoA synthase 1) 4CL1 Nicotiana tabacum (Common tobacco) 547 phenylpropanoid metabolic process [GO:0009698] 4-coumarate-CoA ligase activity [GO:0016207]; ATP binding [GO:0005524]; CoA-ligase activity [GO:0016405]; phenylpropanoid metabolic process [GO:0009698] 4-coumarate-CoA ligase activity [GO:0016207]; ATP binding [GO:0005524]; CoA-ligase activity [GO:0016405] GO:0005524; GO:0009698; GO:0016207; GO:0016405
TRINITY_DN1883_c0_g1_i20 0 28 0 151 sp P18562 UPP_YEAST 49.2 199 95 4 88 681 21 214 3.7e-48 193.7 UPP_YEAST reviewed Uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase) FUR1 YHR128W Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 216 nucleoside metabolic process [GO:0009116]; pyrimidine-containing compound salvage [GO:0008655]; UMP salvage [GO:0044206] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; GTP binding [GO:0005525]; uracil phosphoribosyltransferase activity [GO:0004845]; nucleoside metabolic process [GO:0009116]; pyrimidine-containing compound salvage [GO:0008655]; UMP salvage [GO:0044206] GTP binding [GO:0005525]; uracil phosphoribosyltransferase activity [GO:0004845] GO:0004845; GO:0005525; GO:0005737; GO:0008655; GO:0009116; GO:0044206
TRINITY_DN4842_c0_g1_i1 0 59 0 88 sp Q9S7U0 INO1_WHEAT 68 510 158 2 67 1581 1 510 5.7e-207 722.2 INO1_WHEAT reviewed Inositol-3-phosphate synthase (MIP synthase) (EC 5.5.1.4) (Myo-inositol 1-phosphate synthase) (IPS) (MI-1-P synthase) MIPS Triticum aestivum (Wheat) 510 inositol biosynthetic process [GO:0006021]; phospholipid biosynthetic process [GO:0008654] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; inositol-3-phosphate synthase activity [GO:0004512]; inositol biosynthetic process [GO:0006021]; phospholipid biosynthetic process [GO:0008654] inositol-3-phosphate synthase activity [GO:0004512] GO:0004512; GO:0005737; GO:0006021; GO:0008654
TRINITY_DN8494_c0_g1_i43 0 36 0 116 sp F4ISQ7 TOP3B_ARATH 48.1 54 23 1 219 365 472 525 3e-05 51.2 TOP3B_ARATH reviewed DNA topoisomerase 3-beta (EC 5.6.2.1) At2g32000 F22D22.25 Arabidopsis thaliana (Mouse-ear cress) 865 DNA topological change [GO:0006265] nucleus [GO:0005634] nucleus [GO:0005634]; DNA binding [GO:0003677]; DNA topoisomerase activity [GO:0003916]; DNA topoisomerase type I (single strand cut, ATP-independent) activity [GO:0003917]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; DNA topological change [GO:0006265] DNA binding [GO:0003677]; DNA topoisomerase activity [GO:0003916]; DNA topoisomerase type I (single strand cut, ATP-independent) activity [GO:0003917]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729] GO:0003677; GO:0003729; GO:0003916; GO:0003917; GO:0005634; GO:0006265; GO:0046872
TRINITY_DN424_c0_g1_i20 211 0 30 0 sp Q3BAI2 YCX91_PHAAO 58.7 63 26 0 2031 1843 1 63 4.1e-11 72 YCX91_PHAAO reviewed Uncharacterized protein ORF91 Phalaenopsis aphrodite subsp. formosana (Moth orchid) 91 chloroplast [GO:0009507] chloroplast [GO:0009507] GO:0009507
TRINITY_DN6357_c0_g1_i1 0 56 0 74 sp Q54SN4 RPAC1_DICDI 42.1 323 172 7 45 971 21 342 1.7e-68 261.5 RPAC1_DICDI reviewed DNA-directed RNA polymerases I and III subunit rpac1 (RNA polymerases I and III subunit AC1) polr1c rpa5 DDB_G0282339 Dictyostelium discoideum (Slime mold) 345 transcription by RNA polymerase I [GO:0006360]; transcription by RNA polymerase III [GO:0006383] RNA polymerase I complex [GO:0005736]; RNA polymerase III complex [GO:0005666] RNA polymerase I complex [GO:0005736]; RNA polymerase III complex [GO:0005666]; DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983]; transcription by RNA polymerase I [GO:0006360]; transcription by RNA polymerase III [GO:0006383] DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; protein dimerization activity [GO:0046983] GO:0003677; GO:0003899; GO:0005666; GO:0005736; GO:0006360; GO:0006383; GO:0046983
TRINITY_DN2093_c0_g1_i6 0 98 2 57 sp P0C5P9 YL54B_YEAST 81.2 32 6 0 386 291 21 52 1e-06 55.8 YL54B_YEAST reviewed Putative uncharacterized protein YLR154W-B YLR154W-B smORF398 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 54
TRINITY_DN2860_c0_g1_i2 0 37 0 178 sp P85200 PRS6B_HELAN 79.2 379 79 0 35 1171 35 413 9.2e-174 611.7 PRS6B_HELAN reviewed 26S proteasome regulatory subunit 6B homolog Helianthus annuus (Common sunflower) 414 protein catabolic process [GO:0030163] cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome complex [GO:0000502] cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402]; protein catabolic process [GO:0030163] ATP binding [GO:0005524]; proteasome-activating ATPase activity [GO:0036402] GO:0000502; GO:0005524; GO:0005634; GO:0005737; GO:0030163; GO:0036402
TRINITY_DN3768_c0_g1_i5 938 156 1076 149 sp A5GFY8 SERA_PIG 48.6 529 259 8 245 1819 4 523 1.8e-123 444.9 SERA_PIG reviewed D-3-phosphoglycerate dehydrogenase (3-PGDH) (EC 1.1.1.95) (2-oxoglutarate reductase) (EC 1.1.1.399) (Malate dehydrogenase) (EC 1.1.1.37) PHGDH Sus scrofa (Pig) 533 cellular amino acid metabolic process [GO:0006520]; L-serine biosynthetic process [GO:0006564] L-malate dehydrogenase activity [GO:0030060]; NAD binding [GO:0051287]; phosphoglycerate dehydrogenase activity [GO:0004617]; cellular amino acid metabolic process [GO:0006520]; L-serine biosynthetic process [GO:0006564] L-malate dehydrogenase activity [GO:0030060]; NAD binding [GO:0051287]; phosphoglycerate dehydrogenase activity [GO:0004617] GO:0004617; GO:0006520; GO:0006564; GO:0030060; GO:0051287
TRINITY_DN3922_c0_g1_i7 0 51 0 128 sp Q9XIE6 ALA3_ARATH 36.1 1162 664 28 481 3882 49 1160 3.9e-164 580.9 ALA3_ARATH reviewed Phospholipid-transporting ATPase 3 (AtALA3) (EC 7.6.2.1) (Aminophospholipid ATPase 3) (Aminophospholipid flippase 3) (Protein ABERRANT LOCALIZATION OF PEN3 3) (Protein IRREGULAR TRICHOME BRANCH 2) ALA3 ALP3 ITB2 At1g59820 F23H11.14 Arabidopsis thaliana (Mouse-ear cress) 1213 defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; Golgi to plasma membrane transport [GO:0006893]; Golgi vesicle budding [GO:0048194]; phospholipid translocation [GO:0045332]; protein localization [GO:0008104]; response to molecule of bacterial origin [GO:0002237]; response to molecule of fungal origin [GO:0002238]; root development [GO:0048364]; shoot system development [GO:0048367] endoplasmic reticulum membrane [GO:0005789]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802] endoplasmic reticulum membrane [GO:0005789]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]; aminophospholipid flippase activity [GO:0015247]; ATP binding [GO:0005524]; ATPase-coupled intramembrane lipid transporter activity [GO:0140326]; magnesium ion binding [GO:0000287]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; Golgi to plasma membrane transport [GO:0006893]; Golgi vesicle budding [GO:0048194]; phospholipid translocation [GO:0045332]; protein localization [GO:0008104]; response to molecule of bacterial origin [GO:0002237]; response to molecule of fungal origin [GO:0002238]; root development [GO:0048364]; shoot system development [GO:0048367] aminophospholipid flippase activity [GO:0015247]; ATPase-coupled intramembrane lipid transporter activity [GO:0140326]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287] GO:0000139; GO:0000287; GO:0002237; GO:0002238; GO:0005524; GO:0005634; GO:0005768; GO:0005789; GO:0005794; GO:0005802; GO:0005886; GO:0006893; GO:0008104; GO:0015247; GO:0016021; GO:0042742; GO:0045332; GO:0048194; GO:0048364; GO:0048367; GO:0050832; GO:0140326
TRINITY_DN63820_c0_g1_i1 358 91 172 3 sp Q90YR7 RS7_ICTPU 64.9 111 36 2 36 359 5 115 7e-30 131.3 RS7_ICTPU reviewed 40S ribosomal protein S7 rps7 Ictalurus punctatus (Channel catfish) (Silurus punctatus) 194 chordate embryonic development [GO:0043009]; hemopoiesis [GO:0030097]; regulation of cell cycle [GO:0051726]; translation [GO:0006412] ribosome [GO:0005840] ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; chordate embryonic development [GO:0043009]; hemopoiesis [GO:0030097]; regulation of cell cycle [GO:0051726]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005840; GO:0006412; GO:0030097; GO:0043009; GO:0051726
TRINITY_DN682_c0_g1_i1 97 0 118 5 sp Q3V009 TMED1_MOUSE 35.8 193 121 2 132 710 33 222 1.5e-25 119.4 TMED1_MOUSE reviewed Transmembrane emp24 domain-containing protein 1 (Interleukin-1 receptor-like 1 ligand) (Putative T1/ST2 receptor-binding protein) (p24 family protein gamma-1) (p24gamma1) Tmed1 Il1rl1l Mus musculus (Mouse) 227 endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; Golgi organization [GO:0007030]; intracellular protein transport [GO:0006886] COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886] COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; Golgi organization [GO:0007030]; intracellular protein transport [GO:0006886] GO:0005783; GO:0005789; GO:0005793; GO:0005794; GO:0005886; GO:0006886; GO:0006888; GO:0007030; GO:0016021; GO:0030134; GO:0033116
TRINITY_DN234_c0_g2_i1 0 42 0 101 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN76_c0_g1_i20 0 54 0 80 sp Q2KDW6 DNAK_RHIEC 69.7 598 181 0 170 1963 4 601 1.6e-236 820.8 DNAK_RHIEC reviewed Chaperone protein DnaK (HSP70) (Heat shock 70 kDa protein) (Heat shock protein 70) dnaK RHE_CH00145 Rhizobium etli (strain CFN 42 / ATCC 51251) 638 protein folding [GO:0006457] ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] ATP binding [GO:0005524]; unfolded protein binding [GO:0051082] GO:0005524; GO:0006457; GO:0051082
TRINITY_DN21022_c0_g1_i1 0 34 0 113 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN6564_c0_g1_i1 0 55 0 213 sp Q6P5B0 RRP12_MOUSE 22.7 1254 822 39 59 3649 116 1279 6.6e-33 144.8 RRP12_MOUSE reviewed RRP12-like protein Rrp12 Kiaa0690 Mus musculus (Mouse) 1295 rRNA processing [GO:0006364] cytosol [GO:0005829]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; plasma membrane [GO:0005886] cytosol [GO:0005829]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; rRNA processing [GO:0006364] GO:0005730; GO:0005829; GO:0005886; GO:0006364; GO:0016021; GO:0031965; GO:0043231
TRINITY_DN769_c1_g1_i5 0 136 0 60 sp Q24537 HMG2_DROME 58.6 186 72 3 256 804 170 353 1.7e-56 222.2 HMG2_DROME reviewed High mobility group protein DSP1 (Protein dorsal switch 1) Dsp1 ssrp2 CG12223 Drosophila melanogaster (Fruit fly) 393 chromatin remodeling [GO:0006338]; developmental process [GO:0032502]; DNA recombination [GO:0006310]; DNA unwinding involved in DNA replication [GO:0006268]; leg disc development [GO:0035218]; negative regulation of antimicrobial humoral response [GO:0008348]; negative regulation of RNA polymerase II transcription preinitiation complex assembly [GO:0017055]; negative regulation of transcription, DNA-templated [GO:0045892]; negative regulation of transcription by RNA polymerase II [GO:0000122]; positive regulation of DNA binding [GO:0043388]; positive regulation of innate immune response [GO:0045089]; positive regulation of transcription by RNA polymerase II [GO:0045944]; regulation of transcription, DNA-templated [GO:0006355]; regulation of transcription by RNA polymerase II [GO:0006357]; segment specification [GO:0007379] cytoplasm [GO:0005737]; nuclear chromatin [GO:0000790]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; polytene chromosome [GO:0005700] cytoplasm [GO:0005737]; nuclear chromatin [GO:0000790]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; polytene chromosome [GO:0005700]; DNA binding [GO:0003677]; DNA binding, bending [GO:0008301]; single-stranded DNA binding [GO:0003697]; TBP-class protein binding [GO:0017025]; transcription factor binding [GO:0008134]; chromatin remodeling [GO:0006338]; developmental process [GO:0032502]; DNA recombination [GO:0006310]; DNA unwinding involved in DNA replication [GO:0006268]; leg disc development [GO:0035218]; negative regulation of antimicrobial humoral response [GO:0008348]; negative regulation of RNA polymerase II transcription preinitiation complex assembly [GO:0017055]; negative regulation of transcription by RNA polymerase II [GO:0000122]; negative regulation of transcription, DNA-templated [GO:0045892]; positive regulation of DNA binding [GO:0043388]; positive regulation of innate immune response [GO:0045089]; positive regulation of transcription by RNA polymerase II [GO:0045944]; regulation of transcription by RNA polymerase II [GO:0006357]; regulation of transcription, DNA-templated [GO:0006355]; segment specification [GO:0007379] DNA binding [GO:0003677]; DNA binding, bending [GO:0008301]; single-stranded DNA binding [GO:0003697]; TBP-class protein binding [GO:0017025]; transcription factor binding [GO:0008134] GO:0000122; GO:0000790; GO:0003677; GO:0003697; GO:0005634; GO:0005654; GO:0005700; GO:0005737; GO:0006268; GO:0006310; GO:0006338; GO:0006355; GO:0006357; GO:0007379; GO:0008134; GO:0008301; GO:0008348; GO:0017025; GO:0017055; GO:0032502; GO:0035218; GO:0043388; GO:0045089; GO:0045892; GO:0045944
TRINITY_DN13529_c0_g1_i2 0 69 0 117 sp Q9FMU6 MPCP3_ARATH 43.4 297 152 6 54 941 77 358 5.9e-58 226.1 MPCP3_ARATH reviewed Mitochondrial phosphate carrier protein 3, mitochondrial (Mitochondrial phosphate transporter 3) (MPT3) (Phosphate transporter 3;1) MPT3 AT5 PHT3;1 At5g14040 MUA22_4 Arabidopsis thaliana (Mouse-ear cress) 375 phosphate ion transmembrane transport [GO:0035435]; response to salt stress [GO:0009651] cell wall [GO:0005618]; integral component of mitochondrial inner membrane [GO:0031305]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774] cell wall [GO:0005618]; integral component of mitochondrial inner membrane [GO:0031305]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]; inorganic phosphate transmembrane transporter activity [GO:0005315]; phosphate ion transmembrane transport [GO:0035435]; response to salt stress [GO:0009651] inorganic phosphate transmembrane transporter activity [GO:0005315] GO:0005315; GO:0005618; GO:0005739; GO:0005774; GO:0009651; GO:0031305; GO:0035435
TRINITY_DN239_c15_g1_i3 504 136 1233 400 sp C0KJQ4 ALPS_PORTR 67.5 123 40 0 79 447 1 123 4.3e-46 186.4 ALPS_PORTR reviewed Anti-lipopolysaccharide factor (PtALF) ALF Portunus trituberculatus (Swimming crab) (Neptunus trituberculatus) 123 defense response to bacterium [GO:0042742] extracellular region [GO:0005576] extracellular region [GO:0005576]; defense response to bacterium [GO:0042742] GO:0005576; GO:0042742
TRINITY_DN7233_c1_g1_i2 0 18 0 143 sp P50520 VPS34_SCHPO 35.8 293 149 9 2591 3442 536 798 8.7e-39 164.5 VPS34_SCHPO reviewed Phosphatidylinositol 3-kinase vps34 (PI3-kinase vps34) (PI3K vps34) (PtdIns-3-kinase vps34) (EC 2.7.1.137) (Vacuolar protein sorting-associated protein 34) vps34 SPAC458.05 Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 801 ascospore-type prospore assembly [GO:0031321]; ascospore-type prospore membrane formation [GO:0032120]; autophagosome assembly [GO:0000045]; autophagy of peroxisome [GO:0030242]; endocytosis [GO:0006897]; macroautophagy [GO:0016236]; phosphatidylinositol-3-phosphate biosynthetic process [GO:0036092]; phosphatidylinositol-mediated signaling [GO:0048015]; phosphatidylinositol phosphorylation [GO:0046854] cytoplasm [GO:0005737]; cytosol [GO:0005829]; endosome [GO:0005768]; membrane [GO:0016020]; peroxisome [GO:0005777]; phagophore assembly site [GO:0000407]; phosphatidylinositol 3-kinase complex, class III, type I [GO:0034271]; phosphatidylinositol 3-kinase complex, class III, type II [GO:0034272] cytoplasm [GO:0005737]; cytosol [GO:0005829]; endosome [GO:0005768]; membrane [GO:0016020]; peroxisome [GO:0005777]; phagophore assembly site [GO:0000407]; phosphatidylinositol 3-kinase complex, class III, type I [GO:0034271]; phosphatidylinositol 3-kinase complex, class III, type II [GO:0034272]; 1-phosphatidylinositol-3-kinase activity [GO:0016303]; ATP binding [GO:0005524]; phosphatidylinositol kinase activity [GO:0052742]; ascospore-type prospore assembly [GO:0031321]; ascospore-type prospore membrane formation [GO:0032120]; autophagosome assembly [GO:0000045]; autophagy of peroxisome [GO:0030242]; endocytosis [GO:0006897]; macroautophagy [GO:0016236]; phosphatidylinositol phosphorylation [GO:0046854]; phosphatidylinositol-3-phosphate biosynthetic process [GO:0036092]; phosphatidylinositol-mediated signaling [GO:0048015] 1-phosphatidylinositol-3-kinase activity [GO:0016303]; ATP binding [GO:0005524]; phosphatidylinositol kinase activity [GO:0052742] GO:0000045; GO:0000407; GO:0005524; GO:0005737; GO:0005768; GO:0005777; GO:0005829; GO:0006897; GO:0016020; GO:0016236; GO:0016303; GO:0030242; GO:0031321; GO:0032120; GO:0034271; GO:0034272; GO:0036092; GO:0046854; GO:0048015; GO:0052742
TRINITY_DN28126_c0_g1_i1 0 53 0 89 sp Q9JK81 MYG1_MOUSE 47 321 144 8 163 1056 44 361 9.3e-80 299.3 MYG1_MOUSE reviewed MYG1 exonuclease (EC 3.1.-.-) (Protein Gamm1) Myg1 Mus musculus (Mouse) 380 locomotory exploration behavior [GO:0035641] cytoplasm [GO:0005737]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634] cytoplasm [GO:0005737]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; nuclease activity [GO:0004518]; locomotory exploration behavior [GO:0035641] nuclease activity [GO:0004518] GO:0004518; GO:0005634; GO:0005654; GO:0005730; GO:0005737; GO:0005739; GO:0005759; GO:0035641
TRINITY_DN8534_c0_g1_i2 7 194 0 179 sp O75844 FACE1_HUMAN 55.6 455 188 1 147 1469 16 470 6.9e-142 506.5 FACE1_HUMAN reviewed CAAX prenyl protease 1 homolog (EC 3.4.24.84) (Farnesylated proteins-converting enzyme 1) (FACE-1) (Prenyl protein-specific endoprotease 1) (Zinc metalloproteinase Ste24 homolog) ZMPSTE24 FACE1 STE24 Homo sapiens (Human) 475 adult walking behavior [GO:0007628]; bone mineralization [GO:0030282]; CAAX-box protein processing [GO:0071586]; calcium ion import into sarcoplasmic reticulum [GO:1990036]; CAMKK-AMPK signaling cascade [GO:0061762]; cardiac conduction [GO:0061337]; cardiac muscle fiber development [GO:0048739]; cardiac ventricle development [GO:0003231]; cellular lipid metabolic process [GO:0044255]; cellular response to gamma radiation [GO:0071480]; determination of adult lifespan [GO:0008340]; DNA repair [GO:0006281]; growth plate cartilage development [GO:0003417]; hair follicle development [GO:0001942]; heart morphogenesis [GO:0003007]; histone H2A phosphorylation [GO:1990164]; histone H2B-K5 acetylation [GO:0043979]; hypomethylation of CpG island [GO:0044029]; inflammatory cell apoptotic process [GO:0006925]; kidney morphogenesis [GO:0060993]; liver development [GO:0001889]; maintenance of rDNA [GO:0043007]; multicellular organism growth [GO:0035264]; negative regulation of production of miRNAs involved in gene silencing by miRNA [GO:1903799]; neuromuscular process [GO:0050905]; nuclear envelope organization [GO:0006998]; prenylated protein catabolic process [GO:0030327]; proteolysis [GO:0006508]; regulation of autophagy [GO:0010506]; regulation of bone mineralization [GO:0030500]; regulation of cell shape [GO:0008360]; regulation of cellular senescence [GO:2000772]; regulation of defense response to virus [GO:0050688]; regulation of DNA damage response, signal transduction by p53 class mediator [GO:0043516]; regulation of fibroblast proliferation [GO:0048145]; regulation of glucose metabolic process [GO:0010906]; regulation of histone H4-K16 acetylation [GO:2000618]; regulation of hormone metabolic process [GO:0032350]; regulation of lipid metabolic process [GO:0019216]; regulation of mitotic cell cycle DNA replication [GO:1903463]; regulation of multicellular organism growth [GO:0040014]; regulation of RNA polymerase II regulatory region sequence-specific DNA binding [GO:1903025]; regulation of stress-activated protein kinase signaling cascade [GO:0070302]; regulation of termination of RNA polymerase I transcription [GO:2000730]; regulation of TOR signaling [GO:0032006]; regulation of ventricular cardiac muscle cell membrane repolarization [GO:0060307]; response to DNA damage checkpoint signaling [GO:0072423]; thymus development [GO:0048538]; ventricular cardiac muscle tissue development [GO:0003229] extracellular exosome [GO:0070062]; integral component of endoplasmic reticulum membrane [GO:0030176]; membrane [GO:0016020]; nuclear inner membrane [GO:0005637]; protein-containing complex [GO:0032991] extracellular exosome [GO:0070062]; integral component of endoplasmic reticulum membrane [GO:0030176]; membrane [GO:0016020]; nuclear inner membrane [GO:0005637]; protein-containing complex [GO:0032991]; double-stranded DNA binding [GO:0003690]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; metalloexopeptidase activity [GO:0008235]; adult walking behavior [GO:0007628]; bone mineralization [GO:0030282]; CAAX-box protein processing [GO:0071586]; calcium ion import into sarcoplasmic reticulum [GO:1990036]; CAMKK-AMPK signaling cascade [GO:0061762]; cardiac conduction [GO:0061337]; cardiac muscle fiber development [GO:0048739]; cardiac ventricle development [GO:0003231]; cellular lipid metabolic process [GO:0044255]; cellular response to gamma radiation [GO:0071480]; determination of adult lifespan [GO:0008340]; DNA repair [GO:0006281]; growth plate cartilage development [GO:0003417]; hair follicle development [GO:0001942]; heart morphogenesis [GO:0003007]; histone H2A phosphorylation [GO:1990164]; histone H2B-K5 acetylation [GO:0043979]; hypomethylation of CpG island [GO:0044029]; inflammatory cell apoptotic process [GO:0006925]; kidney morphogenesis [GO:0060993]; liver development [GO:0001889]; maintenance of rDNA [GO:0043007]; multicellular organism growth [GO:0035264]; negative regulation of production of miRNAs involved in gene silencing by miRNA [GO:1903799]; neuromuscular process [GO:0050905]; nuclear envelope organization [GO:0006998]; prenylated protein catabolic process [GO:0030327]; proteolysis [GO:0006508]; regulation of autophagy [GO:0010506]; regulation of bone mineralization [GO:0030500]; regulation of cell shape [GO:0008360]; regulation of cellular senescence [GO:2000772]; regulation of defense response to virus [GO:0050688]; regulation of DNA damage response, signal transduction by p53 class mediator [GO:0043516]; regulation of fibroblast proliferation [GO:0048145]; regulation of glucose metabolic process [GO:0010906]; regulation of histone H4-K16 acetylation [GO:2000618]; regulation of hormone metabolic process [GO:0032350]; regulation of lipid metabolic process [GO:0019216]; regulation of mitotic cell cycle DNA replication [GO:1903463]; regulation of multicellular organism growth [GO:0040014]; regulation of RNA polymerase II regulatory region sequence-specific DNA binding [GO:1903025]; regulation of stress-activated protein kinase signaling cascade [GO:0070302]; regulation of termination of RNA polymerase I transcription [GO:2000730]; regulation of TOR signaling [GO:0032006]; regulation of ventricular cardiac muscle cell membrane repolarization [GO:0060307]; response to DNA damage checkpoint signaling [GO:0072423]; thymus development [GO:0048538]; ventricular cardiac muscle tissue development [GO:0003229] double-stranded DNA binding [GO:0003690]; metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]; metalloexopeptidase activity [GO:0008235] GO:0001889; GO:0001942; GO:0003007; GO:0003229; GO:0003231; GO:0003417; GO:0003690; GO:0004222; GO:0005637; GO:0006281; GO:0006508; GO:0006925; GO:0006998; GO:0007628; GO:0008235; GO:0008340; GO:0008360; GO:0010506; GO:0010906; GO:0016020; GO:0019216; GO:0030176; GO:0030282; GO:0030327; GO:0030500; GO:0032006; GO:0032350; GO:0032991; GO:0035264; GO:0040014; GO:0043007; GO:0043516; GO:0043979; GO:0044029; GO:0044255; GO:0046872; GO:0048145; GO:0048538; GO:0048739; GO:0050688; GO:0050905; GO:0060307; GO:0060993; GO:0061337; GO:0061762; GO:0070062; GO:0070302; GO:0071480; GO:0071586; GO:0072423; GO:1903025; GO:1903463; GO:1903799; GO:1990036; GO:1990164; GO:2000618; GO:2000730; GO:2000772
TRINITY_DN6864_c0_g1_i8 0 83 0 48 sp P43510 CPR6_CAEEL 39.3 275 149 7 155 952 90 355 9.8e-50 199.5 CPR6_CAEEL reviewed Cathepsin B-like cysteine proteinase 6 (EC 3.4.22.-) (Cysteine protease-related 6) cpr-6 C25B8.3 Caenorhabditis elegans 379 proteolysis involved in cellular protein catabolic process [GO:0051603] extracellular space [GO:0005615]; lysosome [GO:0005764] extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] cysteine-type endopeptidase activity [GO:0004197] GO:0004197; GO:0005615; GO:0005764; GO:0051603
TRINITY_DN12600_c0_g1_i13 91 0 89 0 sp Q8VHC8 MA2B1_CAVPO 48.1 1023 465 21 275 3307 34 1002 1.7e-252 874.4 MA2B1_CAVPO reviewed Lysosomal alpha-mannosidase (Laman) (EC 3.2.1.24) (Lysosomal acid alpha-mannosidase) (Mannosidase alpha class 2B member 1) (Mannosidase alpha-B) MAN2B1 MANB Cavia porcellus (Guinea pig) 1007 mannose metabolic process [GO:0006013] lysosome [GO:0005764] lysosome [GO:0005764]; alpha-mannosidase activity [GO:0004559]; carbohydrate binding [GO:0030246]; metal ion binding [GO:0046872]; mannose metabolic process [GO:0006013] alpha-mannosidase activity [GO:0004559]; carbohydrate binding [GO:0030246]; metal ion binding [GO:0046872] GO:0004559; GO:0005764; GO:0006013; GO:0030246; GO:0046872
TRINITY_DN8294_c0_g1_i1 0 62 0 82 sp Q9VE50 GOSR1_DROME 22.9 170 123 3 233 718 58 227 1.1e-06 55.5 GOSR1_DROME reviewed Golgi SNAP receptor complex member 1 (Probable 28 kDa Golgi SNARE protein) Gos28 CG7700 Drosophila melanogaster (Fruit fly) 232 endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; Golgi vesicle transport [GO:0048193]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein transport [GO:0015031]; regulation of vesicle targeting, to, from or within Golgi [GO:0048209]; vesicle fusion [GO:0006906]; vesicle-mediated transport [GO:0016192] cis-Golgi network [GO:0005801]; Golgi medial cisterna [GO:0005797]; Golgi membrane [GO:0000139]; Golgi trans cisterna [GO:0000138]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; SNARE complex [GO:0031201] cis-Golgi network [GO:0005801]; Golgi medial cisterna [GO:0005797]; Golgi membrane [GO:0000139]; Golgi trans cisterna [GO:0000138]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; SNARE complex [GO:0031201]; SNAP receptor activity [GO:0005484]; endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; Golgi vesicle transport [GO:0048193]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein transport [GO:0015031]; regulation of vesicle targeting, to, from or within Golgi [GO:0048209]; vesicle fusion [GO:0006906]; vesicle-mediated transport [GO:0016192] SNAP receptor activity [GO:0005484] GO:0000138; GO:0000139; GO:0005484; GO:0005797; GO:0005801; GO:0006888; GO:0006891; GO:0006906; GO:0015031; GO:0016020; GO:0016021; GO:0016192; GO:0031201; GO:0048193; GO:0048209
TRINITY_DN4596_c0_g1_i5 0 23 0 107 sp Q9LZQ9 DEAH2_ARATH 61.2 688 257 3 727 2772 39 722 1.6e-252 874 DEAH2_ARATH reviewed Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP43) At3g62310 T12C14_10 Arabidopsis thaliana (Mouse-ear cress) 726 mRNA processing [GO:0006397]; RNA splicing [GO:0008380] cytosol [GO:0005829]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681] cytosol [GO:0005829]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] ATP binding [GO:0005524]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724] GO:0003723; GO:0003724; GO:0005524; GO:0005681; GO:0005730; GO:0005829; GO:0006397; GO:0008380
TRINITY_DN1517_c1_g1_i3 37 0 215 0 sp Q99LE6 ABCF2_MOUSE 69 567 174 1 387 2087 59 623 1.7e-235 817.4 ABCF2_MOUSE reviewed ATP-binding cassette sub-family F member 2 Abcf2 Mus musculus (Mouse) 628 mitochondrion [GO:0005739] mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity [GO:0016887] ATPase activity [GO:0016887]; ATP binding [GO:0005524] GO:0005524; GO:0005739; GO:0016887
TRINITY_DN713_c0_g1_i26 310 23 112 0 sp A4Z943 ZBED5_BOVIN 35.5 557 319 10 552 2144 152 694 1.2e-88 331.3 ZBED5_BOVIN reviewed Zinc finger BED domain-containing protein 5 (Transposon-derived Buster1 transposase-like protein) ZBED5 Bos taurus (Bovine) 694 DNA binding [GO:0003677]; metal ion binding [GO:0046872] DNA binding [GO:0003677]; metal ion binding [GO:0046872] GO:0003677; GO:0046872
TRINITY_DN14760_c0_g1_i2 0 66 0 113 sp Q28BT8 DUS3L_XENTR 41.6 563 250 12 268 1812 107 638 5.2e-112 406.8 DUS3L_XENTR reviewed tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like (EC 1.3.1.-) (tRNA-dihydrouridine synthase 3-like) dus3l TNeu105e03.1 Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) 639 flavin adenine dinucleotide binding [GO:0050660]; metal ion binding [GO:0046872]; tRNA dihydrouridine synthase activity [GO:0017150] flavin adenine dinucleotide binding [GO:0050660]; metal ion binding [GO:0046872]; tRNA dihydrouridine synthase activity [GO:0017150] GO:0017150; GO:0046872; GO:0050660
TRINITY_DN5835_c0_g1_i10 51 0 75 0 sp Q5R814 PRP4B_PONAB 74.1 348 90 0 223 1266 660 1007 3e-156 553.1 PRP4B_PONAB reviewed Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1) (PRP4 pre-mRNA-processing factor 4 homolog) PRPF4B Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii) 1007 mRNA processing [GO:0006397]; RNA splicing [GO:0008380] spliceosomal complex [GO:0005681] spliceosomal complex [GO:0005681]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380] ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] GO:0004674; GO:0005524; GO:0005681; GO:0006397; GO:0008380
TRINITY_DN1108_c0_g1_i1 0 81 0 88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN13752_c0_g1_i1 0 33 0 122 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN7231_c0_g1_i14 0 16 0 143 sp P34120 PSA7_DICDI 59.2 240 96 2 46 762 3 241 1.9e-77 290.8 PSA7_DICDI reviewed Proteasome subunit alpha type-7 (EC 3.4.25.1) (Proteasome component DD5) psmA7 prdE DDB_G0272831 Dictyostelium discoideum (Slime mold) 250 proteasomal protein catabolic process [GO:0010498]; proteasomal ubiquitin-independent protein catabolic process [GO:0010499]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; proteolysis [GO:0006508] cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome core complex [GO:0005839]; proteasome core complex, alpha-subunit complex [GO:0019773] cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome core complex [GO:0005839]; proteasome core complex, alpha-subunit complex [GO:0019773]; endopeptidase activity [GO:0004175]; threonine-type endopeptidase activity [GO:0004298]; proteasomal protein catabolic process [GO:0010498]; proteasomal ubiquitin-independent protein catabolic process [GO:0010499]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; proteolysis [GO:0006508] endopeptidase activity [GO:0004175]; threonine-type endopeptidase activity [GO:0004298] GO:0004175; GO:0004298; GO:0005634; GO:0005737; GO:0005839; GO:0006508; GO:0010498; GO:0010499; GO:0019773; GO:0043161
TRINITY_DN10072_c0_g1_i2 0 56 0 62 sp Q8K224 NAT10_MOUSE 50.5 947 428 10 130 2856 3 946 2.3e-260 900.2 NAT10_MOUSE reviewed RNA cytidine acetyltransferase (EC 2.3.1.-) (18S rRNA cytosine acetyltransferase) (N-acetyltransferase 10) Nat10 Kiaa1709 Mus musculus (Mouse) 1024 negative regulation of telomere maintenance via telomerase [GO:0032211]; positive regulation of translation [GO:0045727]; rRNA acetylation involved in maturation of SSU-rRNA [GO:1904812]; tRNA acetylation [GO:0051391] midbody [GO:0030496]; nucleolus [GO:0005730]; telomerase holoenzyme complex [GO:0005697] midbody [GO:0030496]; nucleolus [GO:0005730]; telomerase holoenzyme complex [GO:0005697]; ATP binding [GO:0005524]; DNA polymerase binding [GO:0070182]; mRNA N-acetyltransferase activity [GO:0106162]; N-acetyltransferase activity [GO:0008080]; rRNA cytidine N-acetyltransferase activity [GO:1990883]; tRNA binding [GO:0000049]; negative regulation of telomere maintenance via telomerase [GO:0032211]; positive regulation of translation [GO:0045727]; rRNA acetylation involved in maturation of SSU-rRNA [GO:1904812]; tRNA acetylation [GO:0051391] ATP binding [GO:0005524]; DNA polymerase binding [GO:0070182]; mRNA N-acetyltransferase activity [GO:0106162]; N-acetyltransferase activity [GO:0008080]; rRNA cytidine N-acetyltransferase activity [GO:1990883]; tRNA binding [GO:0000049] GO:0000049; GO:0005524; GO:0005697; GO:0005730; GO:0008080; GO:0030496; GO:0032211; GO:0045727; GO:0051391; GO:0070182; GO:0106162; GO:1904812; GO:1990883
TRINITY_DN351_c0_g1_i1 0 84 0 126 sp Q6EV23 RS23_PAPDA 80.4 143 28 0 37 465 1 143 2.5e-64 246.5 RS23_PAPDA reviewed 40S ribosomal protein S23 RpS23 Papilio dardanus (African swallowtail butterfly) 143 cytoplasmic translation [GO:0002181] cytosolic small ribosomal subunit [GO:0022627]; polysomal ribosome [GO:0042788]; rough endoplasmic reticulum [GO:0005791] cytosolic small ribosomal subunit [GO:0022627]; polysomal ribosome [GO:0042788]; rough endoplasmic reticulum [GO:0005791]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181] structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003735; GO:0005791; GO:0022627; GO:0042788
TRINITY_DN2520_c0_g1_i5 0 56 0 65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN410_c0_g1_i9 0 24 0 110 sp Q6MDI2 PNP_PARUW 41 697 375 13 1049 3127 13 677 9.2e-128 459.9 PNP_PARUW reviewed Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase) pnp pc0643 Protochlamydia amoebophila (strain UWE25) 697 mRNA catabolic process [GO:0006402]; RNA processing [GO:0006396] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; magnesium ion binding [GO:0000287]; polyribonucleotide nucleotidyltransferase activity [GO:0004654]; RNA binding [GO:0003723]; mRNA catabolic process [GO:0006402]; RNA processing [GO:0006396] magnesium ion binding [GO:0000287]; polyribonucleotide nucleotidyltransferase activity [GO:0004654]; RNA binding [GO:0003723] GO:0000287; GO:0003723; GO:0004654; GO:0005737; GO:0006396; GO:0006402
TRINITY_DN225_c0_g1_i18 0 22 0 153 sp Q9H361 PABP3_HUMAN 28.9 374 203 11 714 1757 71 407 1.2e-29 133.3 PABP3_HUMAN reviewed Polyadenylate-binding protein 3 (PABP-3) (Poly(A)-binding protein 3) (Testis-specific poly(A)-binding protein) PABPC3 PABP3 PABPL3 Homo sapiens (Human) 631 mRNA metabolic process [GO:0016071] cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; extracellular exosome [GO:0070062]; nucleus [GO:0005634]; ribonucleoprotein complex [GO:1990904] cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; extracellular exosome [GO:0070062]; nucleus [GO:0005634]; ribonucleoprotein complex [GO:1990904]; mRNA 3'-UTR binding [GO:0003730]; poly(A) binding [GO:0008143]; poly(U) RNA binding [GO:0008266]; RNA binding [GO:0003723]; mRNA metabolic process [GO:0016071] mRNA 3'-UTR binding [GO:0003730]; poly(A) binding [GO:0008143]; poly(U) RNA binding [GO:0008266]; RNA binding [GO:0003723] GO:0003723; GO:0003730; GO:0005634; GO:0005737; GO:0005829; GO:0008143; GO:0008266; GO:0010494; GO:0016071; GO:0070062; GO:1990904
TRINITY_DN332_c0_g2_i3 0 88 0 70 sp Q03043 KGP24_DROME 66.5 714 214 5 409 2535 395 1088 1.5e-270 934.9 KGP24_DROME reviewed cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B (cGK) (EC 2.7.11.12) (Foraging protein) for DG2 PGK2 Pkg24A CG10033 Drosophila melanogaster (Fruit fly) 1088 feeding behavior [GO:0007631]; habituation [GO:0046959]; larval feeding behavior [GO:0030536]; larval locomotory behavior [GO:0008345]; long-term memory [GO:0007616]; motor neuron axon guidance [GO:0008045]; protein phosphorylation [GO:0006468]; regulation of heart contraction [GO:0008016]; regulation of response to food [GO:0032095]; response to sucrose [GO:0009744]; short-term memory [GO:0007614] cytosol [GO:0005829]; plasma membrane [GO:0005886] cytosol [GO:0005829]; plasma membrane [GO:0005886]; ATP binding [GO:0005524]; cGMP binding [GO:0030553]; cGMP-dependent protein kinase activity [GO:0004692]; feeding behavior [GO:0007631]; habituation [GO:0046959]; larval feeding behavior [GO:0030536]; larval locomotory behavior [GO:0008345]; long-term memory [GO:0007616]; motor neuron axon guidance [GO:0008045]; protein phosphorylation [GO:0006468]; regulation of heart contraction [GO:0008016]; regulation of response to food [GO:0032095]; response to sucrose [GO:0009744]; short-term memory [GO:0007614] ATP binding [GO:0005524]; cGMP binding [GO:0030553]; cGMP-dependent protein kinase activity [GO:0004692] GO:0004692; GO:0005524; GO:0005829; GO:0005886; GO:0006468; GO:0007614; GO:0007616; GO:0007631; GO:0008016; GO:0008045; GO:0008345; GO:0009744; GO:0030536; GO:0030553; GO:0032095; GO:0046959
TRINITY_DN48389_c0_g2_i1 0 45 0 115 sp A5DW14 PABP_LODEL 23.1 364 222 10 40 1119 157 466 1.8e-14 82.8 PABP_LODEL reviewed Polyadenylate-binding protein, cytoplasmic and nuclear (PABP) (Poly(A)-binding protein) (Polyadenylate tail-binding protein) PAB1 LELG_01550 Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) (Yeast) (Saccharomyces elongisporus) 661 mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; regulation of nuclear-transcribed mRNA poly(A) tail shortening [GO:0060211]; regulation of translational initiation [GO:0006446] cytoplasmic stress granule [GO:0010494]; nucleus [GO:0005634]; ribosome [GO:0005840] cytoplasmic stress granule [GO:0010494]; nucleus [GO:0005634]; ribosome [GO:0005840]; poly(A) binding [GO:0008143]; promoter-specific chromatin binding [GO:1990841]; protein kinase A catalytic subunit binding [GO:0034236]; ribonuclease inhibitor activity [GO:0008428]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; regulation of nuclear-transcribed mRNA poly(A) tail shortening [GO:0060211]; regulation of translational initiation [GO:0006446] poly(A) binding [GO:0008143]; promoter-specific chromatin binding [GO:1990841]; protein kinase A catalytic subunit binding [GO:0034236]; ribonuclease inhibitor activity [GO:0008428] GO:0005634; GO:0005840; GO:0006397; GO:0006446; GO:0008143; GO:0008428; GO:0010494; GO:0034236; GO:0051028; GO:0060211; GO:1990841
TRINITY_DN1667_c0_g1_i15 0 44 0 101 sp P0A9Y8 CSPC_ECO57 63.4 71 24 2 64 276 1 69 1.1e-16 89 CSPC_ECO57 reviewed Cold shock-like protein CspC (CSP-C) cspC Z2868 ECs2533 Escherichia coli O157:H7 69 cytoplasm [GO:0005737] cytoplasm [GO:0005737]; DNA binding [GO:0003677] DNA binding [GO:0003677] GO:0003677; GO:0005737
TRINITY_DN2160_c2_g2_i14 311 0 265 6 sp P20042 IF2B_HUMAN 74 181 45 1 401 943 155 333 2.2e-74 282 IF2B_HUMAN reviewed Eukaryotic translation initiation factor 2 subunit 2 (Eukaryotic translation initiation factor 2 subunit beta) (eIF-2-beta) EIF2S2 EIF2B Homo sapiens (Human) 333 formation of cytoplasmic translation initiation complex [GO:0001732]; formation of translation preinitiation complex [GO:0001731]; in utero embryonic development [GO:0001701]; male germ cell proliferation [GO:0002176]; male gonad development [GO:0008584]; translational initiation [GO:0006413]; transmembrane transport [GO:0055085] cytoplasm [GO:0005737]; cytosol [GO:0005829]; eukaryotic translation initiation factor 2 complex [GO:0005850] cytoplasm [GO:0005737]; cytosol [GO:0005829]; eukaryotic translation initiation factor 2 complex [GO:0005850]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; translation factor activity, RNA binding [GO:0008135]; translation initiation factor activity [GO:0003743]; translation initiation factor binding [GO:0031369]; formation of cytoplasmic translation initiation complex [GO:0001732]; formation of translation preinitiation complex [GO:0001731]; in utero embryonic development [GO:0001701]; male germ cell proliferation [GO:0002176]; male gonad development [GO:0008584]; translational initiation [GO:0006413]; transmembrane transport [GO:0055085] metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; translation factor activity, RNA binding [GO:0008135]; translation initiation factor activity [GO:0003743]; translation initiation factor binding [GO:0031369] GO:0001701; GO:0001731; GO:0001732; GO:0002176; GO:0003723; GO:0003729; GO:0003743; GO:0005737; GO:0005829; GO:0005850; GO:0006413; GO:0008135; GO:0008584; GO:0031369; GO:0046872; GO:0055085
TRINITY_DN4738_c0_g1_i2 0 32 0 140 sp O04035 AT74H_ARATH 32.1 237 129 8 193 879 3 215 1.8e-20 102.1 AT74H_ARATH reviewed Phosphoglycerate mutase-like protein AT74H (Protein At-74 homolog) (At-74H) At1g08940 F7G19.18 Arabidopsis thaliana (Mouse-ear cress) 281 phosphatase activity [GO:0016791] phosphatase activity [GO:0016791] GO:0016791
TRINITY_DN1470_c0_g1_i10 152 1 89 0 sp O97172 U729_DROME 39.8 83 40 2 237 479 1 75 9.8e-10 68.6 U729_DROME reviewed UPF0729 protein CG18508 CG18508 Drosophila melanogaster (Fruit fly) 99
TRINITY_DN20770_c1_g1_i1 0 6 14 561 sp Q9ULD5 ZN777_HUMAN 37 138 85 2 514 924 692 828 3.4e-21 104 ZN777_HUMAN reviewed Zinc finger protein 777 ZNF777 KIAA1285 Homo sapiens (Human) 831 regulation of transcription, DNA-templated [GO:0006355] nucleus [GO:0005634] nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355] DNA binding [GO:0003677]; metal ion binding [GO:0046872] GO:0003677; GO:0005634; GO:0006355; GO:0046872
TRINITY_DN37235_c0_g2_i2 7469 4846 8273 2400 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN19953_c0_g1_i1 0 58 0 82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN1883_c0_g1_i30 0 77 0 84 sp P18562 UPP_YEAST 49.2 199 95 4 88 681 21 214 4e-48 193.7 UPP_YEAST reviewed Uracil phosphoribosyltransferase (UPRTase) (EC 2.4.2.9) (UMP pyrophosphorylase) FUR1 YHR128W Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 216 nucleoside metabolic process [GO:0009116]; pyrimidine-containing compound salvage [GO:0008655]; UMP salvage [GO:0044206] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; GTP binding [GO:0005525]; uracil phosphoribosyltransferase activity [GO:0004845]; nucleoside metabolic process [GO:0009116]; pyrimidine-containing compound salvage [GO:0008655]; UMP salvage [GO:0044206] GTP binding [GO:0005525]; uracil phosphoribosyltransferase activity [GO:0004845] GO:0004845; GO:0005525; GO:0005737; GO:0008655; GO:0009116; GO:0044206
TRINITY_DN5058_c1_g1_i5 0 86 0 202 sp Q5ZLR4 ESRP2_CHICK 28.1 210 138 5 542 1165 214 412 2.7e-19 98.2 ESRP2_CHICK reviewed Epithelial splicing regulatory protein 2 (RNA-binding motif protein 35B) (RNA-binding protein 35B) ESRP2 RBM35B RCJMB04_5c3 Gallus gallus (Chicken) 701 mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; RNA splicing [GO:0008380] nucleoplasm [GO:0005654]; nucleus [GO:0005634] nucleoplasm [GO:0005654]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; RNA splicing [GO:0008380] mRNA binding [GO:0003729]; RNA binding [GO:0003723] GO:0003723; GO:0003729; GO:0005634; GO:0005654; GO:0006397; GO:0008380; GO:0043484
TRINITY_DN2934_c0_g1_i12 63 0 74 0 sp Q9ET30 TM9S3_MOUSE 75.7 564 137 0 142 1833 24 587 2.7e-239 829.7 TM9S3_MOUSE reviewed Transmembrane 9 superfamily member 3 Tm9sf3 Smbp Mus musculus (Mouse) 587 protein localization to membrane [GO:0072657] integral component of membrane [GO:0016021]; membrane [GO:0016020] integral component of membrane [GO:0016021]; membrane [GO:0016020]; protein localization to membrane [GO:0072657] GO:0016020; GO:0016021; GO:0072657
TRINITY_DN28910_c0_g1_i4 0 39 0 143 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN11104_c0_g1_i2 0 28 0 100 sp Q9SA73 OLA1_ARATH 57 386 157 3 139 1296 18 394 3.8e-125 450.3 OLA1_ARATH reviewed Obg-like ATPase 1 (Ribosome-binding ATPase YchF) (AtYchF1) YchF1 At1g30580 T5I8.3 Arabidopsis thaliana (Mouse-ear cress) 394 defense response [GO:0006952]; negative regulation of response to salt stress [GO:1901001]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasmodesma [GO:0009506] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]; ribosomal large subunit binding [GO:0043023]; ribosome binding [GO:0043022]; defense response [GO:0006952]; negative regulation of response to salt stress [GO:1901001]; response to cadmium ion [GO:0046686]; response to salt stress [GO:0009651] ATPase activity [GO:0016887]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]; ribosomal large subunit binding [GO:0043023]; ribosome binding [GO:0043022] GO:0005524; GO:0005525; GO:0005634; GO:0005737; GO:0005829; GO:0006952; GO:0009506; GO:0009651; GO:0016887; GO:0043022; GO:0043023; GO:0046686; GO:0046872; GO:1901001
TRINITY_DN17354_c0_g3_i1 0 51 0 117 sp Q5KYR4 IOLA2_GEOKA 40.3 481 280 5 60 1484 5 484 1.6e-100 368.6 IOLA2_GEOKA reviewed Malonate-semialdehyde dehydrogenase 2 (MSA dehydrogenase 2) (EC 1.2.1.-) (Methylmalonate-semialdehyde dehydrogenase 2) (MMSA dehydrogenase 2) (MSDH 2) (EC 1.2.1.27) iolA2 GK1887 Geobacillus kaustophilus (strain HTA426) 484 inositol catabolic process [GO:0019310] malonate-semialdehyde dehydrogenase (acetylating) activity [GO:0018478]; methylmalonate-semialdehyde dehydrogenase (acylating) activity [GO:0004491]; inositol catabolic process [GO:0019310] malonate-semialdehyde dehydrogenase (acetylating) activity [GO:0018478]; methylmalonate-semialdehyde dehydrogenase (acylating) activity [GO:0004491] GO:0004491; GO:0018478; GO:0019310
TRINITY_DN286_c0_g2_i1 0 110 0 170 sp Q9HGL8 RL43A_SCHPO 59.6 94 37 1 41 322 1 93 1.8e-26 120.2 RL43A_SCHPO reviewed 60S ribosomal protein L43-A (L37A) rpl4301 rpl43a SPBC800.04c Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 94 cytoplasmic translation [GO:0002181] cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625] cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; metal ion binding [GO:0046872]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181] metal ion binding [GO:0046872]; structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003735; GO:0005829; GO:0022625; GO:0046872
TRINITY_DN4189_c0_g1_i13 0 19 0 127 sp P16521 EF3A_YEAST 35.8 991 572 17 113 3013 53 1003 2.9e-165 584.3 EF3A_YEAST reviewed Elongation factor 3A (EF-3) (EF-3A) (Eukaryotic elongation factor 3) (eEF3) (Translation elongation factor 3A) (Yeast elongation factor 3) YEF3 EFC1 TEF3 YEF3A YLR249W L9672.5 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 1044 negative regulation of protein kinase activity [GO:0006469]; negative regulation of protein phosphorylation [GO:0001933]; translational elongation [GO:0006414]; translational termination [GO:0006415] cytoplasmic stress granule [GO:0010494]; cytosolic ribosome [GO:0022626]; polysomal ribosome [GO:0042788]; ribosome [GO:0005840] cytoplasmic stress granule [GO:0010494]; cytosolic ribosome [GO:0022626]; polysomal ribosome [GO:0042788]; ribosome [GO:0005840]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; rRNA binding [GO:0019843]; translation elongation factor activity [GO:0003746]; negative regulation of protein kinase activity [GO:0006469]; negative regulation of protein phosphorylation [GO:0001933]; translational elongation [GO:0006414]; translational termination [GO:0006415] ATPase activity [GO:0016887]; ATP binding [GO:0005524]; rRNA binding [GO:0019843]; translation elongation factor activity [GO:0003746] GO:0001933; GO:0003746; GO:0005524; GO:0005840; GO:0006414; GO:0006415; GO:0006469; GO:0010494; GO:0016887; GO:0019843; GO:0022626; GO:0042788
TRINITY_DN2145_c2_g1_i3 71 0 68 0 sp Q8UVR5 BAZ1A_XENLA 29.2 271 134 5 1004 1780 50 274 4.2e-29 131.3 BAZ1A_XENLA reviewed Bromodomain adjacent to zinc finger domain protein 1A (ATP-utilizing chromatin assembly and remodeling factor 1) (xACF1) (Fragment) baz1a acf1 Xenopus laevis (African clawed frog) 627 chromatin remodeling [GO:0006338] nucleus [GO:0005634] nucleus [GO:0005634]; metal ion binding [GO:0046872]; chromatin remodeling [GO:0006338] metal ion binding [GO:0046872] GO:0005634; GO:0006338; GO:0046872
TRINITY_DN2278_c0_g1_i12 0 48 0 100 sp Q16JS8 SPNE_AEDAE 30.1 685 413 17 166 2142 9 653 1.3e-74 283.9 SPNE_AEDAE reviewed Probable ATP-dependent RNA helicase spindle-E (EC 3.6.4.13) spn-E AAEL013235 Aedes aegypti (Yellowfever mosquito) (Culex aegypti) 1374 cell differentiation [GO:0030154]; gene silencing by RNA [GO:0031047]; meiotic cell cycle [GO:0051321]; multicellular organism development [GO:0007275]; spermatogenesis [GO:0007283] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; ATP binding [GO:0005524]; nucleic acid binding [GO:0003676]; RNA helicase activity [GO:0003724]; cell differentiation [GO:0030154]; gene silencing by RNA [GO:0031047]; meiotic cell cycle [GO:0051321]; multicellular organism development [GO:0007275]; spermatogenesis [GO:0007283] ATP binding [GO:0005524]; nucleic acid binding [GO:0003676]; RNA helicase activity [GO:0003724] GO:0003676; GO:0003724; GO:0005524; GO:0005737; GO:0007275; GO:0007283; GO:0030154; GO:0031047; GO:0051321
TRINITY_DN793_c0_g1_i21 0 106 0 63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN3485_c0_g1_i11 0 40 0 114 sp O94432 YHKF_SCHPO 33.5 209 111 5 1106 1702 163 353 1.6e-25 119.4 YHKF_SCHPO reviewed Uncharacterized RNA-binding protein C660.15 SPBC660.15 Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 474 mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; regulation of RNA metabolic process [GO:0051252] cytoplasm [GO:0005737]; mRNA cleavage factor complex [GO:0005849]; nucleus [GO:0005634]; ribonucleoprotein complex [GO:1990904] cytoplasm [GO:0005737]; mRNA cleavage factor complex [GO:0005849]; nucleus [GO:0005634]; ribonucleoprotein complex [GO:1990904]; mRNA 3'-UTR binding [GO:0003730]; RNA binding [GO:0003723]; mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; regulation of RNA metabolic process [GO:0051252] mRNA 3'-UTR binding [GO:0003730]; RNA binding [GO:0003723] GO:0003723; GO:0003730; GO:0005634; GO:0005737; GO:0005849; GO:0006378; GO:0006379; GO:0051252; GO:1990904
TRINITY_DN2365_c0_g1_i25 0 101 0 220 sp P12532 KCRU_HUMAN 50.8 372 163 5 180 1292 52 404 6.8e-102 372.9 KCRU_HUMAN reviewed Creatine kinase U-type, mitochondrial (EC 2.7.3.2) (Acidic-type mitochondrial creatine kinase) (Mia-CK) (Ubiquitous mitochondrial creatine kinase) (U-MtCK) CKMT1A CKMT; CKMT1B CKMT Homo sapiens (Human) 417 creatine metabolic process [GO:0006600]; phosphocreatine biosynthetic process [GO:0046314] mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739] mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; creatine kinase activity [GO:0004111]; kinase activity [GO:0016301]; creatine metabolic process [GO:0006600]; phosphocreatine biosynthetic process [GO:0046314] ATP binding [GO:0005524]; creatine kinase activity [GO:0004111]; kinase activity [GO:0016301] GO:0004111; GO:0005524; GO:0005739; GO:0005743; GO:0006600; GO:0016301; GO:0046314
TRINITY_DN14733_c0_g1_i3 0 25 0 141 sp Q9LHQ7 MCES1_ARATH 29.1 330 196 11 2387 3337 43 347 1.6e-22 110.2 MCES1_ARATH reviewed mRNA cap guanine-N7 methyltransferase 1 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 1) (mRNA cap methyltransferase 1) At3g20650 F3H11.3 Arabidopsis thaliana (Mouse-ear cress) 370 7-methylguanosine mRNA capping [GO:0006370] host cell nucleus [GO:0042025]; mRNA cap binding complex [GO:0005845]; nucleus [GO:0005634] host cell nucleus [GO:0042025]; mRNA cap binding complex [GO:0005845]; nucleus [GO:0005634]; mRNA (guanine-N7-)-methyltransferase activity [GO:0004482]; RNA binding [GO:0003723]; 7-methylguanosine mRNA capping [GO:0006370] mRNA (guanine-N7-)-methyltransferase activity [GO:0004482]; RNA binding [GO:0003723] GO:0003723; GO:0004482; GO:0005634; GO:0005845; GO:0006370; GO:0042025
TRINITY_DN6024_c1_g1_i7 0 19 0 150 sp Q869Y7 ODO2_DICDI 56.5 386 145 4 558 1709 75 439 8.7e-85 316.6 ODO2_DICDI reviewed Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial (EC 2.3.1.61) (2-oxoglutarate dehydrogenase complex component E2) (OGDC-E2) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex) odhB dlst DDB_G0275029 Dictyostelium discoideum (Slime mold) 439 L-lysine catabolic process to acetyl-CoA via saccharopine [GO:0033512]; tricarboxylic acid cycle [GO:0006099] mitochondrion [GO:0005739]; oxoglutarate dehydrogenase complex [GO:0045252] mitochondrion [GO:0005739]; oxoglutarate dehydrogenase complex [GO:0045252]; dihydrolipoyllysine-residue succinyltransferase activity [GO:0004149]; L-lysine catabolic process to acetyl-CoA via saccharopine [GO:0033512]; tricarboxylic acid cycle [GO:0006099] dihydrolipoyllysine-residue succinyltransferase activity [GO:0004149] GO:0004149; GO:0005739; GO:0006099; GO:0033512; GO:0045252
TRINITY_DN16951_c0_g1_i2 0 57 0 142 sp Q15427 SF3B4_HUMAN 60.5 200 77 2 35 628 1 200 5.1e-70 266.5 SF3B4_HUMAN reviewed Splicing factor 3B subunit 4 (Pre-mRNA-splicing factor SF3b 49 kDa subunit) (Spliceosome-associated protein 49) (SAP 49) SF3B4 SAP49 Homo sapiens (Human) 424 mRNA processing [GO:0006397]; mRNA splicing, via spliceosome [GO:0000398]; positive regulation of mRNA splicing, via spliceosome [GO:0048026]; regulation of RNA metabolic process [GO:0051252]; RNA splicing [GO:0008380]; RNA splicing, via transesterification reactions [GO:0000375] nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; ribonucleoprotein complex [GO:1990904]; spliceosomal complex [GO:0005681]; U12-type spliceosomal complex [GO:0005689]; U2-type precatalytic spliceosome [GO:0071005] nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; ribonucleoprotein complex [GO:1990904]; spliceosomal complex [GO:0005681]; U12-type spliceosomal complex [GO:0005689]; U2-type precatalytic spliceosome [GO:0071005]; RNA binding [GO:0003723]; splicing factor binding [GO:1990935]; mRNA processing [GO:0006397]; mRNA splicing, via spliceosome [GO:0000398]; positive regulation of mRNA splicing, via spliceosome [GO:0048026]; regulation of RNA metabolic process [GO:0051252]; RNA splicing [GO:0008380]; RNA splicing, via transesterification reactions [GO:0000375] RNA binding [GO:0003723]; splicing factor binding [GO:1990935] GO:0000375; GO:0000398; GO:0003723; GO:0005634; GO:0005654; GO:0005681; GO:0005689; GO:0005730; GO:0006397; GO:0008380; GO:0048026; GO:0051252; GO:0071005; GO:1990904; GO:1990935
TRINITY_DN5457_c0_g2_i1 0 37 0 190 sp Q84M24 AB1A_ARATH 26.5 1791 1023 55 1102 5961 211 1879 4.4e-119 431.8 AB1A_ARATH reviewed ABC transporter A family member 1 (ABC transporter ABCA.1) (AtABCA1) (ABC one homolog protein 1) (AtAOH1) ABCA1 ABC1 AOH1 At2g41700 T32G6.22 Arabidopsis thaliana (Mouse-ear cress) 1882 lipid transport [GO:0006869] integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; vacuolar membrane [GO:0005774] integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; ATPase-coupled transmembrane transporter activity [GO:0042626]; lipid transporter activity [GO:0005319]; lipid transport [GO:0006869] ATPase activity [GO:0016887]; ATPase-coupled transmembrane transporter activity [GO:0042626]; ATP binding [GO:0005524]; lipid transporter activity [GO:0005319] GO:0005319; GO:0005524; GO:0005774; GO:0006869; GO:0016021; GO:0016887; GO:0042626; GO:0043231
TRINITY_DN410_c0_g1_i12 0 67 0 106 sp Q6MDI2 PNP_PARUW 41.1 698 373 14 1049 3127 13 677 1.4e-127 459.5 PNP_PARUW reviewed Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase) pnp pc0643 Protochlamydia amoebophila (strain UWE25) 697 mRNA catabolic process [GO:0006402]; RNA processing [GO:0006396] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; magnesium ion binding [GO:0000287]; polyribonucleotide nucleotidyltransferase activity [GO:0004654]; RNA binding [GO:0003723]; mRNA catabolic process [GO:0006402]; RNA processing [GO:0006396] magnesium ion binding [GO:0000287]; polyribonucleotide nucleotidyltransferase activity [GO:0004654]; RNA binding [GO:0003723] GO:0000287; GO:0003723; GO:0004654; GO:0005737; GO:0006396; GO:0006402
TRINITY_DN104441_c0_g1_i1 0 39 0 93 sp O94365 UTP15_SCHPO 26.8 489 336 9 113 1558 16 489 1.3e-39 166 UTP15_SCHPO reviewed U3 small nucleolar RNA-associated protein 15 (U3 snoRNA-associated protein 15) (U3 protein 15 required for transcription) utp15 SPBC428.19c Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 494 maturation of SSU-rRNA [GO:0030490]; positive regulation of transcription by RNA polymerase I [GO:0045943]; rRNA processing [GO:0006364] cytosol [GO:0005829]; mitotic spindle [GO:0072686]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; t-UTP complex [GO:0034455] cytosol [GO:0005829]; mitotic spindle [GO:0072686]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]; t-UTP complex [GO:0034455]; snoRNA binding [GO:0030515]; maturation of SSU-rRNA [GO:0030490]; positive regulation of transcription by RNA polymerase I [GO:0045943]; rRNA processing [GO:0006364] snoRNA binding [GO:0030515] GO:0005730; GO:0005829; GO:0006364; GO:0030490; GO:0030515; GO:0032040; GO:0034455; GO:0045943; GO:0072686
TRINITY_DN30747_c0_g1_i1 0 68 0 105 sp Q54N38 UCHL5_DICDI 47.1 206 105 2 83 697 7 209 7.5e-46 186 UCHL5_DICDI reviewed Ubiquitin carboxyl-terminal hydrolase isozyme L5 (UCH-L5) (EC 3.4.19.12) (Ubiquitin thioesterase L5) uch2 uchl5 DDB_G0285527 Dictyostelium discoideum (Slime mold) 343 protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome complex [GO:0000502] cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome complex [GO:0000502]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] thiol-dependent ubiquitin-specific protease activity [GO:0004843] GO:0000502; GO:0004843; GO:0005634; GO:0005737; GO:0006511; GO:0016579
TRINITY_DN101360_c1_g1_i1 0 46 0 77 sp Q4HXF6 PPID_GIBZE 57 172 68 4 167 682 14 179 4.8e-49 196.4 PPID_GIBZE reviewed Peptidyl-prolyl cis-trans isomerase D (PPIase D) (EC 5.2.1.8) (Rotamase D) CPR6 FGRRES_10352 FGSG_10352 Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (Wheat head blight fungus) (Fusarium graminearum) 372 protein folding [GO:0006457] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457] peptidyl-prolyl cis-trans isomerase activity [GO:0003755] GO:0003755; GO:0005737; GO:0006457
TRINITY_DN156_c1_g1_i7 0 30 0 133 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN9349_c0_g1_i7 0 26 0 129 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN18645_c0_g1_i1 0 42 0 88 sp Q3UMC0 AFG2H_MOUSE 46.8 570 270 9 640 2274 326 887 1.1e-142 508.8 AFG2H_MOUSE reviewed ATPase family protein 2 homolog (EC 3.6.4.10) (Spermatogenesis-associated factor protein) (Spermatogenesis-associated protein 5) Spata5 Spaf Mus musculus (Mouse) 893 brain development [GO:0007420]; cell differentiation [GO:0030154]; spermatogenesis [GO:0007283] cytoplasm [GO:0005737]; mitochondrion [GO:0005739] cytoplasm [GO:0005737]; mitochondrion [GO:0005739]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; brain development [GO:0007420]; cell differentiation [GO:0030154]; spermatogenesis [GO:0007283] ATPase activity [GO:0016887]; ATP binding [GO:0005524] GO:0005524; GO:0005737; GO:0005739; GO:0007283; GO:0007420; GO:0016887; GO:0030154
TRINITY_DN299_c0_g3_i2 0 80 0 223 sp P78615 FAS2_EMEND 40 2130 920 35 6410 12553 3 1856 0 1325.5 FAS2_EMEND reviewed Fatty acid synthase subunit alpha (EC 2.3.1.86) [Includes: Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synthase)] fasA Emericella nidulans (Aspergillus nidulans) 1858 long-chain fatty acid biosynthetic process [GO:0042759] 3-oxo-glutaryl-[acp] methyl ester reductase activity [GO:0102131]; 3-oxo-pimeloyl-[acp] methyl ester reductase activity [GO:0102132]; 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [GO:0004316]; 3-oxoacyl-[acyl-carrier-protein] synthase activity [GO:0004315]; fatty-acyl-CoA synthase activity [GO:0004321]; holo-[acyl-carrier-protein] synthase activity [GO:0008897]; magnesium ion binding [GO:0000287]; long-chain fatty acid biosynthetic process [GO:0042759] 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [GO:0004316]; 3-oxoacyl-[acyl-carrier-protein] synthase activity [GO:0004315]; 3-oxo-glutaryl-[acp] methyl ester reductase activity [GO:0102131]; 3-oxo-pimeloyl-[acp] methyl ester reductase activity [GO:0102132]; fatty-acyl-CoA synthase activity [GO:0004321]; holo-[acyl-carrier-protein] synthase activity [GO:0008897]; magnesium ion binding [GO:0000287] GO:0000287; GO:0004315; GO:0004316; GO:0004321; GO:0008897; GO:0042759; GO:0102131; GO:0102132
TRINITY_DN670_c0_g1_i5 0 116 0 140 sp P0CT58 RS22A_SCHPO 81.8 33 6 0 48 146 1 33 1.2e-07 58.2 RS22A_SCHPO reviewed 40S ribosomal protein S22-A rps2201 rps22a SPAC22A12.04c Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 130 cytoplasmic translation [GO:0002181] cytosol [GO:0005829]; cytosolic small ribosomal subunit [GO:0022627]; nucleus [GO:0005634] cytosol [GO:0005829]; cytosolic small ribosomal subunit [GO:0022627]; nucleus [GO:0005634]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181] structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003735; GO:0005634; GO:0005829; GO:0022627
TRINITY_DN5443_c0_g1_i29 0 68 0 43 sp Q502K3 ANR52_DANRE 28.6 217 140 3 664 1305 147 351 1.7e-15 86.3 ANR52_DANRE reviewed Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C (PP6-ARS-C) (Serine/threonine-protein phosphatase 6 regulatory subunit ARS-C) ankrd52 zgc:112069 Danio rerio (Zebrafish) (Brachydanio rerio) 1071
TRINITY_DN1433_c13_g1_i6 0 33 0 101 sp Q9UNX4 WDR3_HUMAN 39.2 961 530 16 184 3000 1 929 5.8e-185 649.8 WDR3_HUMAN reviewed WD repeat-containing protein 3 WDR3 Homo sapiens (Human) 943 maturation of SSU-rRNA [GO:0030490]; rRNA processing [GO:0006364] nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040] nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040]; RNA binding [GO:0003723]; snoRNA binding [GO:0030515]; maturation of SSU-rRNA [GO:0030490]; rRNA processing [GO:0006364] RNA binding [GO:0003723]; snoRNA binding [GO:0030515] GO:0003723; GO:0005654; GO:0005730; GO:0006364; GO:0030490; GO:0030515; GO:0031965; GO:0032040; GO:0034388
TRINITY_DN20621_c0_g1_i3 0 87 0 37 sp Q05B17 WDR48_XENTR 63 687 232 11 238 2271 1 674 3.7e-235 817 WDR48_XENTR reviewed WD repeat-containing protein 48 (USP1-associated factor 1) wdr48 uaf1 Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) 678 positive regulation of protein deubiquitination [GO:1903003]; protein deubiquitination [GO:0016579] late endosome [GO:0005770]; lysosome [GO:0005764]; nucleus [GO:0005634] late endosome [GO:0005770]; lysosome [GO:0005764]; nucleus [GO:0005634]; ubiquitin binding [GO:0043130]; positive regulation of protein deubiquitination [GO:1903003]; protein deubiquitination [GO:0016579] ubiquitin binding [GO:0043130] GO:0005634; GO:0005764; GO:0005770; GO:0016579; GO:0043130; GO:1903003
TRINITY_DN105895_c0_g1_i1 0 56 0 109 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN15905_c0_g1_i2 0 84 0 64 sp Q9SJ36 RS172_ARATH 64.3 140 43 1 58 456 1 140 3.7e-43 176 RS172_ARATH reviewed 40S ribosomal protein S17-2 RPS17B At2g05220 F5G3.12 Arabidopsis thaliana (Mouse-ear cress) 140 translation [GO:0006412] cytosolic small ribosomal subunit [GO:0022627]; mitochondrion [GO:0005739] cytosolic small ribosomal subunit [GO:0022627]; mitochondrion [GO:0005739]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005739; GO:0006412; GO:0022627
TRINITY_DN2847_c1_g1_i1 0 48 0 144 sp Q7PC79 XPOT_ARATH 21.1 786 555 24 307 2529 55 820 1.2e-19 100.5 XPOT_ARATH reviewed Exportin-T (Exportin(tRNA)) (Protein PAUSED) (tRNA exportin) PSD At1g72560 F28P22.25 Arabidopsis thaliana (Mouse-ear cress) 988 flower development [GO:0009908]; meristem initiation [GO:0010014]; tRNA export from nucleus [GO:0006409]; tRNA processing [GO:0008033]; tRNA re-export from nucleus [GO:0071528] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear matrix [GO:0016363]; nuclear pore [GO:0005643] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear matrix [GO:0016363]; nuclear pore [GO:0005643]; nuclear export signal receptor activity [GO:0005049]; Ran GTPase binding [GO:0008536]; tRNA binding [GO:0000049]; flower development [GO:0009908]; meristem initiation [GO:0010014]; tRNA export from nucleus [GO:0006409]; tRNA processing [GO:0008033]; tRNA re-export from nucleus [GO:0071528] nuclear export signal receptor activity [GO:0005049]; Ran GTPase binding [GO:0008536]; tRNA binding [GO:0000049] GO:0000049; GO:0005049; GO:0005643; GO:0005737; GO:0005829; GO:0006409; GO:0008033; GO:0008536; GO:0009908; GO:0010014; GO:0016363; GO:0071528
TRINITY_DN14376_c0_g1_i1 0 60 0 112 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN8480_c0_g1_i5 0 35 0 96 sp Q76LC6 RBM24_DANRE 60.1 148 53 2 206 649 5 146 4.8e-42 176 RBM24_DANRE reviewed RNA-binding protein 24 (RNA-binding motif protein 24) (RNA-binding protein SEB-4) rbm24 Danio rerio (Zebrafish) (Brachydanio rerio) 230 3'-UTR-mediated mRNA destabilization [GO:0061158]; 3'-UTR-mediated mRNA stabilization [GO:0070935]; atrial cardiac muscle tissue development [GO:0003228]; cardiovascular system development [GO:0072358]; cell differentiation [GO:0030154]; cellular response to DNA damage stimulus [GO:0006974]; embryonic neurocranium morphogenesis [GO:0048702]; heart looping [GO:0001947]; mRNA destabilization [GO:0061157]; mRNA processing [GO:0006397]; mRNA stabilization [GO:0048255]; negative regulation of cytoplasmic translation [GO:2000766]; positive regulation of 3'-UTR-mediated mRNA stabilization [GO:1905870]; positive regulation of myoblast differentiation [GO:0045663]; positive regulation of myotube differentiation [GO:0010831]; positive regulation of sarcomere organization [GO:0060298]; positive regulation of skeletal muscle fiber differentiation [GO:1902811]; positive regulation of stem cell differentiation [GO:2000738]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of mRNA stability [GO:0043488]; regulation of myotube differentiation [GO:0010830]; regulation of RNA metabolic process [GO:0051252]; regulation of sarcomere organization [GO:0060297]; RNA splicing [GO:0008380]; skeletal muscle tissue development [GO:0007519]; somitogenesis [GO:0001756] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; ribonucleoprotein complex [GO:1990904] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; ribonucleoprotein complex [GO:1990904]; mRNA 3'-UTR AU-rich region binding [GO:0035925]; mRNA 3'-UTR binding [GO:0003730]; mRNA binding [GO:0003729]; mRNA CDS binding [GO:1990715]; pre-mRNA intronic binding [GO:0097157]; RNA binding [GO:0003723]; sequence-specific mRNA binding [GO:1990825]; 3'-UTR-mediated mRNA destabilization [GO:0061158]; 3'-UTR-mediated mRNA stabilization [GO:0070935]; atrial cardiac muscle tissue development [GO:0003228]; cardiovascular system development [GO:0072358]; cell differentiation [GO:0030154]; cellular response to DNA damage stimulus [GO:0006974]; embryonic neurocranium morphogenesis [GO:0048702]; heart looping [GO:0001947]; mRNA destabilization [GO:0061157]; mRNA processing [GO:0006397]; mRNA stabilization [GO:0048255]; negative regulation of cytoplasmic translation [GO:2000766]; positive regulation of 3'-UTR-mediated mRNA stabilization [GO:1905870]; positive regulation of myoblast differentiation [GO:0045663]; positive regulation of myotube differentiation [GO:0010831]; positive regulation of sarcomere organization [GO:0060298]; positive regulation of skeletal muscle fiber differentiation [GO:1902811]; positive regulation of stem cell differentiation [GO:2000738]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of mRNA stability [GO:0043488]; regulation of myotube differentiation [GO:0010830]; regulation of RNA metabolic process [GO:0051252]; regulation of sarcomere organization [GO:0060297]; RNA splicing [GO:0008380]; skeletal muscle tissue development [GO:0007519]; somitogenesis [GO:0001756] mRNA 3'-UTR AU-rich region binding [GO:0035925]; mRNA 3'-UTR binding [GO:0003730]; mRNA binding [GO:0003729]; mRNA CDS binding [GO:1990715]; pre-mRNA intronic binding [GO:0097157]; RNA binding [GO:0003723]; sequence-specific mRNA binding [GO:1990825] GO:0000381; GO:0001756; GO:0001947; GO:0003228; GO:0003723; GO:0003729; GO:0003730; GO:0005634; GO:0005737; GO:0005829; GO:0006397; GO:0006974; GO:0007519; GO:0008380; GO:0010830; GO:0010831; GO:0030154; GO:0035925; GO:0043488; GO:0045663; GO:0048255; GO:0048702; GO:0051252; GO:0060297; GO:0060298; GO:0061157; GO:0061158; GO:0070935; GO:0072358; GO:0097157; GO:1902811; GO:1905870; GO:1990715; GO:1990825; GO:1990904; GO:2000738; GO:2000766
TRINITY_DN113091_c0_g1_i1 0 115 0 180 sp Q98TF5 RL39_CHICK 77.6 49 11 0 36 182 1 49 1.1e-14 80.9 RL39_CHICK reviewed 60S ribosomal protein L39 RPL39 Gallus gallus (Chicken) 51 translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625] cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0006412; GO:0022625
TRINITY_DN3059_c10_g1_i2 2385 1076 1974 401 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN1988_c1_g1_i42 0 74 0 112 sp P22953 MD37E_ARATH 58.3 551 219 5 532 2160 8 555 1.8e-171 604.7 HS701_ARATH reviewed Heat shock 70 kDa protein 1 (Heat shock cognate 70 kDa protein 1) (Heat shock cognate protein 70-1) (AtHsc70-1) (Heat shock protein 70-1) (AtHsp70-1) (Protein EARLY-RESPONSIVE TO DEHYDRATION 2) HSP70-1 ERD2 HSC70-1 MED37_4 MED37E At5g02500 T22P11.90 Arabidopsis thaliana (Mouse-ear cress) 651 cellular response to unfolded protein [GO:0034620]; chaperone cofactor-dependent protein refolding [GO:0051085]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to other organism [GO:0098542]; negative regulation of seed germination [GO:0010187]; protein refolding [GO:0042026]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to unfolded protein [GO:0006986]; response to virus [GO:0009615]; stomatal closure [GO:0090332] apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774] apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; heat shock protein binding [GO:0031072]; misfolded protein binding [GO:0051787]; protease binding [GO:0002020]; protein folding chaperone [GO:0044183]; unfolded protein binding [GO:0051082]; cellular response to unfolded protein [GO:0034620]; chaperone cofactor-dependent protein refolding [GO:0051085]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to other organism [GO:0098542]; negative regulation of seed germination [GO:0010187]; protein refolding [GO:0042026]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to unfolded protein [GO:0006986]; response to virus [GO:0009615]; stomatal closure [GO:0090332] ATPase activity [GO:0016887]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; misfolded protein binding [GO:0051787]; protease binding [GO:0002020]; protein folding chaperone [GO:0044183]; unfolded protein binding [GO:0051082] GO:0002020; GO:0005524; GO:0005618; GO:0005634; GO:0005730; GO:0005737; GO:0005774; GO:0005794; GO:0005829; GO:0005886; GO:0006986; GO:0009408; GO:0009409; GO:0009506; GO:0009507; GO:0009615; GO:0010187; GO:0016887; GO:0022626; GO:0031072; GO:0034620; GO:0042026; GO:0042742; GO:0044183; GO:0046686; GO:0048046; GO:0050832; GO:0051082; GO:0051085; GO:0051787; GO:0090332; GO:0098542
TRINITY_DN5692_c0_g1_i23 0 32 0 133 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN1667_c0_g2_i2 0 99 0 144 sp P0A9Y8 CSPC_ECO57 59.4 69 26 2 68 274 1 67 4.8e-14 80.5 CSPC_ECO57 reviewed Cold shock-like protein CspC (CSP-C) cspC Z2868 ECs2533 Escherichia coli O157:H7 69 cytoplasm [GO:0005737] cytoplasm [GO:0005737]; DNA binding [GO:0003677] DNA binding [GO:0003677] GO:0003677; GO:0005737
TRINITY_DN379_c0_g1_i4 0 112 0 87 sp O01504 RLA2_CAEEL 55.4 65 29 0 37 231 1 65 6e-13 75.5 RLA2_CAEEL reviewed 60S acidic ribosomal protein P2 C37A2.7 Caenorhabditis elegans 107 translational elongation [GO:0006414] ribosome [GO:0005840] ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translational elongation [GO:0006414] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005840; GO:0006414
TRINITY_DN16288_c0_g1_i16 0 34 0 154 sp Q5ZDJ6 C3H8_ORYSJ 31.1 367 202 8 156 1163 102 448 4.8e-47 191 C3H8_ORYSJ reviewed Zinc finger CCCH domain-containing protein 8 (OsC3H8) Os01g0616400 LOC_Os01g42970 P0686E09.13-1 P0686E09.13-2 Oryza sativa subsp. japonica (Rice) 462 DNA binding [GO:0003677]; metal ion binding [GO:0046872] DNA binding [GO:0003677]; metal ion binding [GO:0046872] GO:0003677; GO:0046872
TRINITY_DN7794_c3_g1_i4 0 39 0 103 sp Q9LD90 CBF5_ARATH 64.5 397 139 2 59 1246 8 403 3.2e-151 536.6 CBF5_ARATH reviewed H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (CBF5 homolog) (Dyskerin) (Nopp-140-associated protein of 57 kDa homolog) (AtNAP57) (Nucleolar protein NAP57 homolog) CBF5 NAP57 At3g57150 F24I3.230 Arabidopsis thaliana (Mouse-ear cress) 565 box H/ACA snoRNA 3'-end processing [GO:0000495]; mRNA pseudouridine synthesis [GO:1990481]; rRNA pseudouridine synthesis [GO:0031118]; snRNA pseudouridine synthesis [GO:0031120] box H/ACA snoRNP complex [GO:0031429]; cytosol [GO:0005829]; nucleolus [GO:0005730]; plasmodesma [GO:0009506] box H/ACA snoRNP complex [GO:0031429]; cytosol [GO:0005829]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]; pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]; box H/ACA snoRNA 3'-end processing [GO:0000495]; mRNA pseudouridine synthesis [GO:1990481]; rRNA pseudouridine synthesis [GO:0031118]; snRNA pseudouridine synthesis [GO:0031120] pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723] GO:0000495; GO:0003723; GO:0005730; GO:0005829; GO:0009506; GO:0009982; GO:0031118; GO:0031120; GO:0031429; GO:1990481
TRINITY_DN67_c0_g1_i4 0 21 0 118 sp P36627 BYR3_SCHPO 31.4 118 54 5 468 773 25 131 1.2e-11 72.4 BYR3_SCHPO reviewed Cellular nucleic acid-binding protein homolog byr3 SPAC13D6.02c Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 179 positive regulation of cytoplasmic translation [GO:2000767] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleolus [GO:0005730] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleolus [GO:0005730]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; single-stranded RNA binding [GO:0003727]; translation activator activity [GO:0008494]; translation regulator activity [GO:0045182]; zinc ion binding [GO:0008270]; positive regulation of cytoplasmic translation [GO:2000767] DNA binding [GO:0003677]; mRNA binding [GO:0003729]; single-stranded RNA binding [GO:0003727]; translation activator activity [GO:0008494]; translation regulator activity [GO:0045182]; zinc ion binding [GO:0008270] GO:0003677; GO:0003727; GO:0003729; GO:0005730; GO:0005737; GO:0005829; GO:0008270; GO:0008494; GO:0045182; GO:2000767
TRINITY_DN507_c1_g1_i14 0 66 0 56 sp Q5ZIA5 COPB_CHICK 69.4 956 285 4 85 2943 1 951 0 1287.7 COPB_CHICK reviewed Coatomer subunit beta (Beta-coat protein) (Beta-COP) COPB1 COPB RCJMB04_28l17 Gallus gallus (Chicken) 953 endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; intra-Golgi vesicle-mediated transport [GO:0006891] COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; Golgi membrane [GO:0000139] COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; structural molecule activity [GO:0005198]; endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; intra-Golgi vesicle-mediated transport [GO:0006891]; intracellular protein transport [GO:0006886] structural molecule activity [GO:0005198] GO:0000139; GO:0005198; GO:0005829; GO:0006886; GO:0006888; GO:0006891; GO:0030126
TRINITY_DN1678_c0_g1_i5 0 115 0 206 sp Q3T0U2 RL14_BOVIN 36.2 127 81 0 57 437 2 128 6.3e-20 99 RL14_BOVIN reviewed 60S ribosomal protein L14 RPL14 Bos taurus (Bovine) 214 ribosomal large subunit biogenesis [GO:0042273]; translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625] cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit biogenesis [GO:0042273]; translation [GO:0006412] RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0003723; GO:0003735; GO:0006412; GO:0022625; GO:0042273
TRINITY_DN18945_c0_g1_i1 0 72 0 174 sp Q0VCK0 PUR9_BOVIN 49.5 596 286 7 133 1905 7 592 1.9e-152 541.2 PUR9_BOVIN reviewed Bifunctional purine biosynthesis protein ATIC (AICAR transformylase/inosine monophosphate cyclohydrolase) (ATIC) [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase) (AICAR formyltransferase) (AICAR transformylase); IMP cyclohydrolase (EC 3.5.4.10) (IMP synthase) (Inosinicase)] ATIC PURH Bos taurus (Bovine) 592 'de novo' IMP biosynthetic process [GO:0006189]; cellular response to interleukin-7 [GO:0098761] cytosol [GO:0005829]; plasma membrane [GO:0005886] cytosol [GO:0005829]; plasma membrane [GO:0005886]; IMP cyclohydrolase activity [GO:0003937]; phosphoribosylaminoimidazolecarboxamide formyltransferase activity [GO:0004643]; protein homodimerization activity [GO:0042803]; 'de novo' IMP biosynthetic process [GO:0006189]; cellular response to interleukin-7 [GO:0098761] IMP cyclohydrolase activity [GO:0003937]; phosphoribosylaminoimidazolecarboxamide formyltransferase activity [GO:0004643]; protein homodimerization activity [GO:0042803] GO:0003937; GO:0004643; GO:0005829; GO:0005886; GO:0006189; GO:0042803; GO:0098761
TRINITY_DN11616_c0_g1_i1 0 74 0 155 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN17977_c0_g1_i1 0 58 0 146 sp Q4WAS9 SWR1_ASPFU 39.5 863 432 18 375 2876 820 1621 5e-153 543.5 SWR1_ASPFU reviewed Helicase swr1 (EC 3.6.4.12) swr1 AFUA_7G02370 Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (Aspergillus fumigatus) 1695 ATP-dependent chromatin remodeling [GO:0043044]; chromatin remodeling [GO:0006338]; gene silencing [GO:0016458]; histone exchange [GO:0043486] Swr1 complex [GO:0000812] Swr1 complex [GO:0000812]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; histone binding [GO:0042393]; ATP-dependent chromatin remodeling [GO:0043044]; chromatin remodeling [GO:0006338]; gene silencing [GO:0016458]; histone exchange [GO:0043486] ATPase activity [GO:0016887]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; histone binding [GO:0042393] GO:0000812; GO:0003677; GO:0003678; GO:0005524; GO:0006338; GO:0016458; GO:0016887; GO:0042393; GO:0043044; GO:0043486
TRINITY_DN4472_c1_g1_i3 464 28 381 30 sp Q5F3J5 PSME3_CHICK 53.3 242 110 3 90 809 14 254 1.9e-71 271.9 PSME3_CHICK reviewed Proteasome activator complex subunit 3 (Activator of multicatalytic protease subunit 3) (Proteasome activator 28 subunit gamma) (PA28g) (PA28gamma) PSME3 RCJMB04_15e19 RCJMB04_5i13 Gallus gallus (Chicken) 254 positive regulation of endopeptidase activity [GO:0010950]; regulation of G1/S transition of mitotic cell cycle [GO:2000045]; regulation of proteasomal protein catabolic process [GO:0061136] cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; proteasome activator complex [GO:0008537] cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; proteasome activator complex [GO:0008537]; endopeptidase activator activity [GO:0061133]; positive regulation of endopeptidase activity [GO:0010950]; regulation of G1/S transition of mitotic cell cycle [GO:2000045]; regulation of proteasomal protein catabolic process [GO:0061136] endopeptidase activator activity [GO:0061133] GO:0005654; GO:0005737; GO:0008537; GO:0010950; GO:0061133; GO:0061136; GO:2000045
TRINITY_DN2924_c0_g1_i2 0 27 0 142 sp O00782 TCPG_OXYGR 66.4 530 174 4 97 1677 9 537 1.3e-194 681 TCPG_OXYGR reviewed T-complex protein 1 subunit gamma (TCP-1-gamma) (CCT-gamma) (Chaperonin subunit CCTV gamma) Oxytricha granulifera (Ciliate) 559 protein folding [GO:0006457] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]; protein folding [GO:0006457] ATP binding [GO:0005524]; unfolded protein binding [GO:0051082] GO:0005524; GO:0005737; GO:0006457; GO:0051082
TRINITY_DN325_c1_g1_i15 243 45 382 11 sp Q94572 TBA3_HOMAM 94.7 451 22 1 464 1810 1 451 5.3e-257 888.3 TBA3_HOMAM reviewed Tubulin alpha-3 chain (Alpha-III tubulin) Homarus americanus (American lobster) 451 microtubule-based process [GO:0007017] cytoplasm [GO:0005737]; microtubule [GO:0005874] cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017] GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200] GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017
TRINITY_DN9696_c0_g1_i1 0 44 0 97 sp O14325 YB7A_SCHPO 49.8 615 250 7 568 2235 155 769 9.2e-158 558.9 YB7A_SCHPO reviewed Uncharacterized AAA domain-containing protein C16E9.10c SPBC16E9.10c Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 779 positive regulation of telomerase activity [GO:0051973]; ribosomal large subunit export from nucleus [GO:0000055]; ribosome biogenesis [GO:0042254] nucleolus [GO:0005730]; nucleus [GO:0005634] nucleolus [GO:0005730]; nucleus [GO:0005634]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; preribosome binding [GO:1990275]; positive regulation of telomerase activity [GO:0051973]; ribosomal large subunit export from nucleus [GO:0000055]; ribosome biogenesis [GO:0042254] ATPase activity [GO:0016887]; ATP binding [GO:0005524]; preribosome binding [GO:1990275] GO:0000055; GO:0005524; GO:0005634; GO:0005730; GO:0016887; GO:0042254; GO:0051973; GO:1990275
TRINITY_DN7447_c0_g1_i1 0 48 0 94 sp Q9D9Q0 LRC69_MOUSE 32.2 205 133 6 171 770 23 226 7.4e-14 80.5 LRC69_MOUSE reviewed Leucine-rich repeat-containing protein 69 Lrrc69 Mus musculus (Mouse) 347 signal transduction [GO:0007165] signal transduction [GO:0007165] GO:0007165
TRINITY_DN2295_c0_g1_i16 0 74 0 71 sp Q50KB1 SEP2_EMIHU 49 149 71 2 92 526 14 161 3e-36 154.8 SEP2_EMIHU reviewed Protein disulfide-isomerase-like protein EhSep2 SEP2 Emiliania huxleyi (Pontosphaera huxleyi) 223 endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788] endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]; protein disulfide isomerase activity [GO:0003756] protein disulfide isomerase activity [GO:0003756] GO:0003756; GO:0005783; GO:0005788
TRINITY_DN8561_c2_g1_i1 0 47 0 78 sp Q9FMU5 UTP18_ARATH 33.7 419 263 7 82 1299 127 543 2.2e-62 241.5 UTP18_ARATH reviewed U3 small nucleolar RNA-associated protein 18 homolog At5g14050 MUA22.5 Arabidopsis thaliana (Mouse-ear cress) 546 rRNA processing [GO:0006364] Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040] Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040]; rRNA processing [GO:0006364] GO:0006364; GO:0032040; GO:0034388; GO:0080008
TRINITY_DN12337_c0_g1_i1 0 32 0 89 sp Q9CAN5 PPR98_ARATH 25.6 429 277 13 288 1496 76 488 2.8e-23 112.1 PPR98_ARATH reviewed Pentatricopeptide repeat-containing protein At1g63080, mitochondrial At1g63080 F16M19.17 Arabidopsis thaliana (Mouse-ear cress) 614 mitochondrion [GO:0005739] mitochondrion [GO:0005739] GO:0005739
TRINITY_DN1710_c2_g1_i20 0 46 0 133 sp Q5EA10 PIGM_BOVIN 43.7 394 205 6 1355 2491 24 415 5e-81 304.3 PIGM_BOVIN reviewed GPI mannosyltransferase 1 (EC 2.4.1.-) (GPI mannosyltransferase I) (GPI-MT-I) (Phosphatidylinositol-glycan biosynthesis class M protein) (PIG-M) PIGM Bos taurus (Bovine) 423 GPI anchor biosynthetic process [GO:0006506] endoplasmic reticulum membrane [GO:0005789]; glycosylphosphatidylinositol-mannosyltransferase I complex [GO:1990529]; integral component of membrane [GO:0016021] endoplasmic reticulum membrane [GO:0005789]; glycosylphosphatidylinositol-mannosyltransferase I complex [GO:1990529]; integral component of membrane [GO:0016021]; alpha-1,4-mannosyltransferase activity [GO:0051751]; glycolipid mannosyltransferase activity [GO:0004376]; mannosyltransferase activity [GO:0000030]; GPI anchor biosynthetic process [GO:0006506] alpha-1,4-mannosyltransferase activity [GO:0051751]; glycolipid mannosyltransferase activity [GO:0004376]; mannosyltransferase activity [GO:0000030] GO:0000030; GO:0004376; GO:0005789; GO:0006506; GO:0016021; GO:0051751; GO:1990529
TRINITY_DN24177_c0_g1_i1 0 28 0 101 sp Q9P6R2 YOH8_SCHPO 26.3 186 104 6 1095 1601 87 256 4.6e-06 54.7 YOH8_SCHPO reviewed Uncharacterized protein C13E7.08c SPBC13E7.08c Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 429 histone exchange [GO:0043486]; histone modification [GO:0016570]; negative regulation of extent of heterochromatin assembly [GO:0033696]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; transcription elongation from RNA polymerase II promoter [GO:0006368] Cdc73/Paf1 complex [GO:0016593]; nucleus [GO:0005634] Cdc73/Paf1 complex [GO:0016593]; nucleus [GO:0005634]; RNA binding [GO:0003723]; RNA polymerase II C-terminal domain phosphoserine binding [GO:1990269]; histone exchange [GO:0043486]; histone modification [GO:0016570]; negative regulation of extent of heterochromatin assembly [GO:0033696]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; transcription elongation from RNA polymerase II promoter [GO:0006368] RNA binding [GO:0003723]; RNA polymerase II C-terminal domain phosphoserine binding [GO:1990269] GO:0003723; GO:0005634; GO:0006368; GO:0016570; GO:0016593; GO:0032968; GO:0033696; GO:0043486; GO:1990269
TRINITY_DN18049_c0_g1_i8 0 42 0 74 sp Q3UHX9 CI114_MOUSE 48.4 308 135 8 205 1074 71 372 1.7e-68 261.5 CI114_MOUSE reviewed Putative methyltransferase C9orf114 homolog (EC 2.1.1.-) (Centromere protein 32) (CENP-32) (Kinetochore-associated protein) (SPOUT domain-containing methyltransferase 1) Spout1 D2Wsu81e Mus musculus (Mouse) 385 cell cycle [GO:0007049]; cell division [GO:0051301]; maintenance of centrosome location [GO:0051661]; methylation [GO:0032259]; posttranscriptional regulation of gene expression [GO:0010608]; production of miRNAs involved in gene silencing by miRNA [GO:0035196] condensed chromosome kinetochore [GO:0000777]; cytoplasm [GO:0005737]; kinetochore [GO:0000776]; mitotic spindle [GO:0072686]; spindle pole centrosome [GO:0031616] condensed chromosome kinetochore [GO:0000777]; cytoplasm [GO:0005737]; kinetochore [GO:0000776]; mitotic spindle [GO:0072686]; spindle pole centrosome [GO:0031616]; methyltransferase activity [GO:0008168]; miRNA binding [GO:0035198]; cell cycle [GO:0007049]; cell division [GO:0051301]; maintenance of centrosome location [GO:0051661]; methylation [GO:0032259]; posttranscriptional regulation of gene expression [GO:0010608]; production of miRNAs involved in gene silencing by miRNA [GO:0035196] methyltransferase activity [GO:0008168]; miRNA binding [GO:0035198] GO:0000776; GO:0000777; GO:0005737; GO:0007049; GO:0008168; GO:0010608; GO:0031616; GO:0032259; GO:0035196; GO:0035198; GO:0051301; GO:0051661; GO:0072686
TRINITY_DN1470_c0_g1_i1 0 28 0 102 sp O97172 U729_DROME 39.8 83 40 2 237 479 1 75 9.8e-10 68.6 U729_DROME reviewed UPF0729 protein CG18508 CG18508 Drosophila melanogaster (Fruit fly) 99
TRINITY_DN1919_c0_g1_i21 0 40 0 95 sp P27484 GRP2_NICSY 45.6 68 34 2 184 381 8 74 1.3e-07 58.5 GRP2_NICSY reviewed Glycine-rich protein 2 GRP-2 Nicotiana sylvestris (Wood tobacco) (South American tobacco) 214 RNA binding [GO:0003723]; zinc ion binding [GO:0008270] RNA binding [GO:0003723]; zinc ion binding [GO:0008270] GO:0003723; GO:0008270
TRINITY_DN3598_c0_g1_i17 0 40 0 132 sp O42668 TPR1_SCHPO 19.3 865 596 28 174 2693 35 822 7.7e-08 61.6 TPR1_SCHPO reviewed Tetratricopeptide repeat protein 1 tpr1 SPAC27D7.14c SPAC637.02c Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 1039 histone modification [GO:0016570]; potassium ion transport [GO:0006813]; regulation of histone H3-K4 methylation [GO:0051569]; regulation of transcription, DNA-templated [GO:0006355]; transcription elongation from RNA polymerase II promoter [GO:0006368]; transcription elongation from RNA polymerase I promoter [GO:0006362] Cdc73/Paf1 complex [GO:0016593]; nucleus [GO:0005634] Cdc73/Paf1 complex [GO:0016593]; nucleus [GO:0005634]; RNA polymerase II complex binding [GO:0000993]; histone modification [GO:0016570]; potassium ion transport [GO:0006813]; regulation of histone H3-K4 methylation [GO:0051569]; regulation of transcription, DNA-templated [GO:0006355]; transcription elongation from RNA polymerase I promoter [GO:0006362]; transcription elongation from RNA polymerase II promoter [GO:0006368] RNA polymerase II complex binding [GO:0000993] GO:0000993; GO:0005634; GO:0006355; GO:0006362; GO:0006368; GO:0006813; GO:0016570; GO:0016593; GO:0051569
TRINITY_DN246_c0_g3_i1 0 77 0 150 sp P18101 RL40_DROME 90.6 128 12 0 37 420 1 128 2.3e-61 236.5 RL40_DROME reviewed Ubiquitin-60S ribosomal protein L40 (CEP52) [Cleaved into: Ubiquitin; 60S ribosomal protein L40] RpL40 Ubi-f UBI-F52 CG2960 Drosophila melanogaster (Fruit fly) 128 cellular protein modification process [GO:0006464]; cytoplasmic translation [GO:0002181]; modification-dependent protein catabolic process [GO:0019941]; protein ubiquitination [GO:0016567]; translation [GO:0006412]; ubiquitin-dependent protein catabolic process [GO:0006511] cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic small ribosomal subunit [GO:0022627]; nucleus [GO:0005634]; small ribosomal subunit [GO:0015935] cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic small ribosomal subunit [GO:0022627]; nucleus [GO:0005634]; small ribosomal subunit [GO:0015935]; protein tag [GO:0031386]; structural constituent of ribosome [GO:0003735]; ubiquitin protein ligase binding [GO:0031625]; cellular protein modification process [GO:0006464]; cytoplasmic translation [GO:0002181]; modification-dependent protein catabolic process [GO:0019941]; protein ubiquitination [GO:0016567]; translation [GO:0006412]; ubiquitin-dependent protein catabolic process [GO:0006511] protein tag [GO:0031386]; structural constituent of ribosome [GO:0003735]; ubiquitin protein ligase binding [GO:0031625] GO:0002181; GO:0003735; GO:0005634; GO:0005737; GO:0005829; GO:0006412; GO:0006464; GO:0006511; GO:0015935; GO:0016567; GO:0019941; GO:0022625; GO:0022627; GO:0031386; GO:0031625
TRINITY_DN4104_c1_g1_i3 0 44 0 93 sp Q5XJQ5 EXOS9_DANRE 37.1 318 183 5 97 999 13 330 7.4e-49 196.4 EXOS9_DANRE reviewed Exosome complex component RRP45 (Exosome component 9) exosc9 Danio rerio (Zebrafish) (Brachydanio rerio) 393 exonucleolytic catabolism of deadenylated mRNA [GO:0043928]; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000467]; nuclear mRNA surveillance [GO:0071028]; nuclear polyadenylation-dependent mRNA catabolic process [GO:0071042]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; nuclear polyadenylation-dependent tRNA catabolic process [GO:0071038]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; rRNA catabolic process [GO:0016075]; U1 snRNA 3'-end processing [GO:0034473]; U4 snRNA 3'-end processing [GO:0034475]; U5 snRNA 3'-end processing [GO:0034476] cytoplasmic exosome (RNase complex) [GO:0000177]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654] cytoplasmic exosome (RNase complex) [GO:0000177]; nuclear exosome (RNase complex) [GO:0000176]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; AU-rich element binding [GO:0017091]; exonucleolytic catabolism of deadenylated mRNA [GO:0043928]; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000467]; nuclear mRNA surveillance [GO:0071028]; nuclear polyadenylation-dependent mRNA catabolic process [GO:0071042]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; nuclear polyadenylation-dependent tRNA catabolic process [GO:0071038]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; rRNA catabolic process [GO:0016075]; U1 snRNA 3'-end processing [GO:0034473]; U4 snRNA 3'-end processing [GO:0034475]; U5 snRNA 3'-end processing [GO:0034476] AU-rich element binding [GO:0017091] GO:0000176; GO:0000177; GO:0000467; GO:0005654; GO:0005730; GO:0016075; GO:0017091; GO:0034427; GO:0034473; GO:0034475; GO:0034476; GO:0043928; GO:0071028; GO:0071035; GO:0071038; GO:0071042
TRINITY_DN1474_c0_g1_i3 24 0 154 0 sp Q8AXB3 VGFR4_DANRE 26.2 1287 723 35 279 4004 50 1154 1.4e-109 399.8 VGFR4_DANRE reviewed Vascular endothelial growth factor receptor kdr-like (EC 2.7.10.1) (Fetal liver kinase 1) (FLK-1) (Kinase insert domain receptor-A) (Kinase insert domain receptor-like) (Protein-tyrosine kinase receptor flk-1) (Vascular endothelial growth factor receptor 4) (VEGFR-4) kdrl flk flk-1 flk1 flka kdr kdra vegfr2 vegfr4 vegr2 si:ch211-276g21.4 Danio rerio (Zebrafish) (Brachydanio rerio) 1302 angiogenesis [GO:0001525]; artery morphogenesis [GO:0048844]; blood vessel development [GO:0001568]; cell differentiation [GO:0030154]; embryonic heart tube development [GO:0035050]; multicellular organism development [GO:0007275]; peptidyl-tyrosine phosphorylation [GO:0018108]; positive regulation of kinase activity [GO:0033674]; sprouting angiogenesis [GO:0002040]; thyroid gland development [GO:0030878]; transmembrane receptor protein tyrosine kinase signaling pathway [GO:0007169] integral component of plasma membrane [GO:0005887]; receptor complex [GO:0043235] integral component of plasma membrane [GO:0005887]; receptor complex [GO:0043235]; ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713]; transmembrane receptor protein tyrosine kinase activity [GO:0004714]; vascular endothelial growth factor binding [GO:0038085]; vascular endothelial growth factor-activated receptor activity [GO:0005021]; angiogenesis [GO:0001525]; artery morphogenesis [GO:0048844]; blood vessel development [GO:0001568]; cell differentiation [GO:0030154]; embryonic heart tube development [GO:0035050]; multicellular organism development [GO:0007275]; peptidyl-tyrosine phosphorylation [GO:0018108]; positive regulation of kinase activity [GO:0033674]; sprouting angiogenesis [GO:0002040]; thyroid gland development [GO:0030878]; transmembrane receptor protein tyrosine kinase signaling pathway [GO:0007169] ATP binding [GO:0005524]; protein tyrosine kinase activity [GO:0004713]; transmembrane receptor protein tyrosine kinase activity [GO:0004714]; vascular endothelial growth factor-activated receptor activity [GO:0005021]; vascular endothelial growth factor binding [GO:0038085] GO:0001525; GO:0001568; GO:0002040; GO:0004713; GO:0004714; GO:0005021; GO:0005524; GO:0005887; GO:0007169; GO:0007275; GO:0018108; GO:0030154; GO:0030878; GO:0033674; GO:0035050; GO:0038085; GO:0043235; GO:0048844
TRINITY_DN14170_c0_g1_i1 0 103 0 185 sp Q56XG6 RH15_ARATH 66 423 138 3 118 1377 6 425 4.9e-155 549.3 RH15_ARATH reviewed DEAD-box ATP-dependent RNA helicase 15 (EC 3.6.4.13) (UAP56 homolog A) RH15 UAP56A At5g11170 F2I11.60 Arabidopsis thaliana (Mouse-ear cress) 427 mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; response to cadmium ion [GO:0046686]; RNA splicing [GO:0008380] cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasmodesma [GO:0009506] cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasmodesma [GO:0009506]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; double-stranded DNA binding [GO:0003690]; double-stranded RNA binding [GO:0003725]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; single-stranded RNA binding [GO:0003727]; mRNA processing [GO:0006397]; mRNA transport [GO:0051028]; response to cadmium ion [GO:0046686]; RNA splicing [GO:0008380] ATPase activity [GO:0016887]; ATP binding [GO:0005524]; double-stranded DNA binding [GO:0003690]; double-stranded RNA binding [GO:0003725]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; single-stranded RNA binding [GO:0003727] GO:0003690; GO:0003723; GO:0003724; GO:0003725; GO:0003727; GO:0005524; GO:0005634; GO:0005730; GO:0005829; GO:0006397; GO:0008380; GO:0009506; GO:0016887; GO:0046686; GO:0051028
TRINITY_DN6754_c0_g1_i2 0 62 0 134 sp Q8R3Q2 PP6R2_MOUSE 21.3 470 289 13 210 1562 20 427 1.5e-18 96.7 PP6R2_MOUSE reviewed Serine/threonine-protein phosphatase 6 regulatory subunit 2 (SAPS domain family member 2) Ppp6r2 Kiaa0685 Pp6r2 Saps2 Mus musculus (Mouse) 923 regulation of phosphoprotein phosphatase activity [GO:0043666] cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; nucleus [GO:0005634] cytosol [GO:0005829]; intracellular membrane-bounded organelle [GO:0043231]; nucleus [GO:0005634]; protein phosphatase binding [GO:0019903]; protein phosphatase regulator activity [GO:0019888]; regulation of phosphoprotein phosphatase activity [GO:0043666] protein phosphatase binding [GO:0019903]; protein phosphatase regulator activity [GO:0019888] GO:0005634; GO:0005829; GO:0019888; GO:0019903; GO:0043231; GO:0043666
TRINITY_DN14532_c0_g1_i10 0 54 0 118 sp Q6MDI2 PNP_PARUW 43.3 615 333 7 1013 2854 18 617 2e-124 449.1 PNP_PARUW reviewed Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase) pnp pc0643 Protochlamydia amoebophila (strain UWE25) 697 mRNA catabolic process [GO:0006402]; RNA processing [GO:0006396] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; magnesium ion binding [GO:0000287]; polyribonucleotide nucleotidyltransferase activity [GO:0004654]; RNA binding [GO:0003723]; mRNA catabolic process [GO:0006402]; RNA processing [GO:0006396] magnesium ion binding [GO:0000287]; polyribonucleotide nucleotidyltransferase activity [GO:0004654]; RNA binding [GO:0003723] GO:0000287; GO:0003723; GO:0004654; GO:0005737; GO:0006396; GO:0006402
TRINITY_DN793_c0_g1_i1 0 3 0 218 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN12088_c0_g1_i7 0 81 0 34 sp A1Z713 VPS13_DROME 19.8 3335 1995 95 258 9641 6 2866 1.3e-110 404.8 VPS13_DROME reviewed Vacuolar protein sorting-associated protein 13 Vps13 CG2093 Drosophila melanogaster (Fruit fly) 3321 protein metabolic process [GO:0019538]; protein retention in Golgi apparatus [GO:0045053]; protein targeting to vacuole [GO:0006623] extrinsic component of membrane [GO:0019898]; late endosome membrane [GO:0031902] extrinsic component of membrane [GO:0019898]; late endosome membrane [GO:0031902]; protein metabolic process [GO:0019538]; protein retention in Golgi apparatus [GO:0045053]; protein targeting to vacuole [GO:0006623] GO:0006623; GO:0019538; GO:0019898; GO:0031902; GO:0045053
TRINITY_DN1418_c0_g1_i1 0 105 0 60 sp Q9VCP0 ELOA1_DROME 46 239 118 5 1278 1970 408 643 1.8e-42 176.8 ELOA1_DROME reviewed Transcription elongation factor B polypeptide 3 (Elongin-A) (RNA polymerase II transcription factor SIII subunit A) (dEloA) EloA CG6755 Drosophila melanogaster (Fruit fly) 643 imaginal disc-derived wing vein specification [GO:0007474]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; transcription elongation from RNA polymerase II promoter [GO:0006368] elongin complex [GO:0070449]; nucleus [GO:0005634]; transcription elongation factor complex [GO:0008023] elongin complex [GO:0070449]; nucleus [GO:0005634]; transcription elongation factor complex [GO:0008023]; imaginal disc-derived wing vein specification [GO:0007474]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; transcription elongation from RNA polymerase II promoter [GO:0006368] GO:0005634; GO:0006368; GO:0007474; GO:0008023; GO:0032968; GO:0070449
TRINITY_DN17449_c0_g1_i1 0 47 0 134 sp Q9UNX4 WDR3_HUMAN 33.5 925 502 18 35 2545 3 902 3.4e-129 464.2 WDR3_HUMAN reviewed WD repeat-containing protein 3 WDR3 Homo sapiens (Human) 943 maturation of SSU-rRNA [GO:0030490]; rRNA processing [GO:0006364] nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040] nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; Pwp2p-containing subcomplex of 90S preribosome [GO:0034388]; small-subunit processome [GO:0032040]; RNA binding [GO:0003723]; snoRNA binding [GO:0030515]; maturation of SSU-rRNA [GO:0030490]; rRNA processing [GO:0006364] RNA binding [GO:0003723]; snoRNA binding [GO:0030515] GO:0003723; GO:0005654; GO:0005730; GO:0006364; GO:0030490; GO:0030515; GO:0031965; GO:0032040; GO:0034388
TRINITY_DN2756_c0_g1_i1 0 43 0 99 sp Q6ICX4 PTBP3_ARATH 30.6 180 109 6 581 1114 35 200 1.4e-10 69.3 PTBP3_ARATH reviewed Polypyrimidine tract-binding protein homolog 3 At1g43190 F1I21.14 Arabidopsis thaliana (Mouse-ear cress) 432 mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380] cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932] cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380] mRNA binding [GO:0003729] GO:0000932; GO:0003729; GO:0005634; GO:0005737; GO:0006397; GO:0006417; GO:0008380; GO:0043484
TRINITY_DN8012_c0_g1_i2 0 40 0 84 sp Q8NFA0 UBP32_HUMAN 42.1 1739 784 26 109 5070 1 1601 0 1304.7 UBP32_HUMAN reviewed Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.4.19.12) (Deubiquitinating enzyme 32) (Renal carcinoma antigen NY-REN-60) (Ubiquitin thioesterase 32) (Ubiquitin-specific-processing protease 32) USP32 USP10 Homo sapiens (Human) 1604 protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020] cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; calcium ion binding [GO:0005509]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511] calcium ion binding [GO:0005509]; thiol-dependent ubiquitin-specific protease activity [GO:0004843] GO:0004843; GO:0005509; GO:0005794; GO:0005829; GO:0006511; GO:0016020; GO:0016579
TRINITY_DN246_c0_g2_i1 0 49 0 97 sp P18101 RL40_DROME 90.6 128 12 0 40 423 1 128 3.5e-61 236.5 RL40_DROME reviewed Ubiquitin-60S ribosomal protein L40 (CEP52) [Cleaved into: Ubiquitin; 60S ribosomal protein L40] RpL40 Ubi-f UBI-F52 CG2960 Drosophila melanogaster (Fruit fly) 128 cellular protein modification process [GO:0006464]; cytoplasmic translation [GO:0002181]; modification-dependent protein catabolic process [GO:0019941]; protein ubiquitination [GO:0016567]; translation [GO:0006412]; ubiquitin-dependent protein catabolic process [GO:0006511] cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic small ribosomal subunit [GO:0022627]; nucleus [GO:0005634]; small ribosomal subunit [GO:0015935] cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic small ribosomal subunit [GO:0022627]; nucleus [GO:0005634]; small ribosomal subunit [GO:0015935]; protein tag [GO:0031386]; structural constituent of ribosome [GO:0003735]; ubiquitin protein ligase binding [GO:0031625]; cellular protein modification process [GO:0006464]; cytoplasmic translation [GO:0002181]; modification-dependent protein catabolic process [GO:0019941]; protein ubiquitination [GO:0016567]; translation [GO:0006412]; ubiquitin-dependent protein catabolic process [GO:0006511] protein tag [GO:0031386]; structural constituent of ribosome [GO:0003735]; ubiquitin protein ligase binding [GO:0031625] GO:0002181; GO:0003735; GO:0005634; GO:0005737; GO:0005829; GO:0006412; GO:0006464; GO:0006511; GO:0015935; GO:0016567; GO:0019941; GO:0022625; GO:0022627; GO:0031386; GO:0031625
TRINITY_DN6216_c0_g1_i23 0 62 0 164 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN16439_c0_g1_i2 0 41 0 87 sp P87303 TFB2_SCHPO 34.2 111 68 2 1065 1385 287 396 5e-09 64.3 TFB2_SCHPO reviewed General transcription and DNA repair factor IIH subunit tfb2 (TFIIH subunit tfb2) (RNA polymerase II transcription factor B subunit 2) tfb2 SPBC13G1.13 SPBC31F10.01 Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 447 nucleotide-excision repair [GO:0006289]; nucleotide-excision repair, DNA duplex unwinding [GO:0000717]; phosphorylation of RNA polymerase II C-terminal domain [GO:0070816]; transcription initiation from RNA polymerase II promoter [GO:0006367] cytoplasm [GO:0005737]; nucleotide-excision repair factor 3 complex [GO:0000112]; transcription factor TFIIH core complex [GO:0000439]; transcription factor TFIIH holo complex [GO:0005675] cytoplasm [GO:0005737]; nucleotide-excision repair factor 3 complex [GO:0000112]; transcription factor TFIIH core complex [GO:0000439]; transcription factor TFIIH holo complex [GO:0005675]; ATPase activator activity [GO:0001671]; double-stranded DNA binding [GO:0003690]; RNA polymerase II general transcription initiation factor activity [GO:0016251]; nucleotide-excision repair [GO:0006289]; nucleotide-excision repair, DNA duplex unwinding [GO:0000717]; phosphorylation of RNA polymerase II C-terminal domain [GO:0070816]; transcription initiation from RNA polymerase II promoter [GO:0006367] ATPase activator activity [GO:0001671]; double-stranded DNA binding [GO:0003690]; RNA polymerase II general transcription initiation factor activity [GO:0016251] GO:0000112; GO:0000439; GO:0000717; GO:0001671; GO:0003690; GO:0005675; GO:0005737; GO:0006289; GO:0006367; GO:0016251; GO:0070816
TRINITY_DN14658_c0_g1_i1 0 62 0 155 sp Q28141 DHX9_BOVIN 32.6 1155 668 25 186 3455 33 1141 6.4e-161 570.1 DHX9_BOVIN reviewed ATP-dependent RNA helicase A (EC 3.6.4.13) (DEAH box protein 9) (Nuclear DNA helicase II) (NDH II) DHX9 DDX9 NDH2 Bos taurus (Bovine) 1287 alternative mRNA splicing, via spliceosome [GO:0000380]; cellular response to exogenous dsRNA [GO:0071360]; cellular response to tumor necrosis factor [GO:0071356]; CRD-mediated mRNA stabilization [GO:0070934]; DNA duplex unwinding [GO:0032508]; DNA replication [GO:0006260]; DNA-templated transcription, termination [GO:0006353]; DNA-templated viral transcription [GO:0039695]; G-quadruplex DNA unwinding [GO:0044806]; inflammatory response [GO:0006954]; innate immune response [GO:0045087]; mRNA transport [GO:0051028]; positive regulation of cytoplasmic translation [GO:2000767]; positive regulation of DNA repair [GO:0045739]; positive regulation of DNA replication [GO:0045740]; positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity [GO:2000373]; positive regulation of fibroblast proliferation [GO:0048146]; positive regulation of gene silencing by miRNA [GO:2000637]; positive regulation of interferon-alpha secretion [GO:1902741]; positive regulation of interferon-beta secretion [GO:0035549]; positive regulation of interleukin-6 secretion [GO:2000778]; positive regulation of NF-kappaB transcription factor activity [GO:0051092]; positive regulation of polysome binding [GO:1905698]; positive regulation of response to cytokine stimulus [GO:0060760]; positive regulation of RNA export from nucleus [GO:0046833]; positive regulation of transcription by RNA polymerase II [GO:0045944]; positive regulation of tumor necrosis factor secretion [GO:1904469]; positive regulation of viral transcription [GO:0050434]; positive regulation of viral translation [GO:1904973]; protein localization to cytoplasmic stress granule [GO:1903608]; regulation of cytoplasmic translation [GO:2000765]; regulation of mRNA processing [GO:0050684]; rhythmic process [GO:0048511]; RNA secondary structure unwinding [GO:0010501]; small RNA loading onto RISC [GO:0070922]; targeting of mRNA for destruction involved in RNA interference [GO:0030423] actin cytoskeleton [GO:0015629]; centrosome [GO:0005813]; CRD-mediated mRNA stability complex [GO:0070937]; cytoplasm [GO:0005737]; cytoplasmic ribonucleoprotein granule [GO:0036464]; nuclear body [GO:0016604]; nuclear stress granule [GO:0097165]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; perichromatin fibrils [GO:0005726]; polysomal ribosome [GO:0042788]; polysome [GO:0005844]; ribonucleoprotein complex [GO:1990904]; RISC complex [GO:0016442]; RISC-loading complex [GO:0070578] actin cytoskeleton [GO:0015629]; centrosome [GO:0005813]; CRD-mediated mRNA stability complex [GO:0070937]; cytoplasm [GO:0005737]; cytoplasmic ribonucleoprotein granule [GO:0036464]; nuclear body [GO:0016604]; nuclear stress granule [GO:0097165]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; perichromatin fibrils [GO:0005726]; polysomal ribosome [GO:0042788]; polysome [GO:0005844]; ribonucleoprotein complex [GO:1990904]; RISC complex [GO:0016442]; RISC-loading complex [GO:0070578]; 3'-5' DNA helicase activity [GO:0043138]; 3'-5' DNA/RNA helicase activity [GO:0033679]; 3'-5' RNA helicase activity [GO:0034458]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; chromatin DNA binding [GO:0031490]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; DNA replication origin binding [GO:0003688]; double-stranded DNA binding [GO:0003690]; double-stranded RNA binding [GO:0003725]; importin-alpha family protein binding [GO:0061676]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; nucleoside-triphosphatase activity [GO:0017111]; nucleoside-triphosphate diphosphatase activity [GO:0047429]; polysome binding [GO:1905538]; promoter-specific chromatin binding [GO:1990841]; regulatory region RNA binding [GO:0001069]; RISC complex binding [GO:1905172]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; RNA polymerase binding [GO:0070063]; RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO:0000978]; RNA polymerase II complex binding [GO:0000993]; RNA polymerase II transcription factor binding [GO:0001085]; RNA stem-loop binding [GO:0035613]; sequence-specific mRNA binding [GO:1990825]; single-stranded 3'-5' DNA helicase activity [GO:1990518]; single-stranded DNA binding [GO:0003697]; single-stranded RNA binding [GO:0003727]; siRNA binding [GO:0035197]; transcription coactivator activity [GO:0003713]; triplex DNA binding [GO:0045142]; alternative mRNA splicing, via spliceosome [GO:0000380]; cellular response to exogenous dsRNA [GO:0071360]; cellular response to tumor necrosis factor [GO:0071356]; CRD-mediated mRNA stabilization [GO:0070934]; DNA duplex unwinding [GO:0032508]; DNA replication [GO:0006260]; DNA-templated transcription, termination [GO:0006353]; DNA-templated viral transcription [GO:0039695]; G-quadruplex DNA unwinding [GO:0044806]; inflammatory response [GO:0006954]; innate immune response [GO:0045087]; mRNA transport [GO:0051028]; positive regulation of cytoplasmic translation [GO:2000767]; positive regulation of DNA repair [GO:0045739]; positive regulation of DNA replication [GO:0045740]; positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity [GO:2000373]; positive regulation of fibroblast proliferation [GO:0048146]; positive regulation of gene silencing by miRNA [GO:2000637]; positive regulation of interferon-alpha secretion [GO:1902741]; positive regulation of interferon-beta secretion [GO:0035549]; positive regulation of interleukin-6 secretion [GO:2000778]; positive regulation of NF-kappaB transcription factor activity [GO:0051092]; positive regulation of polysome binding [GO:1905698]; positive regulation of response to cytokine stimulus [GO:0060760]; positive regulation of RNA export from nucleus [GO:0046833]; positive regulation of transcription by RNA polymerase II [GO:0045944]; positive regulation of tumor necrosis factor secretion [GO:1904469]; positive regulation of viral transcription [GO:0050434]; positive regulation of viral translation [GO:1904973]; protein localization to cytoplasmic stress granule [GO:1903608]; regulation of cytoplasmic translation [GO:2000765]; regulation of mRNA processing [GO:0050684]; rhythmic process [GO:0048511]; RNA secondary structure unwinding [GO:0010501]; small RNA loading onto RISC [GO:0070922]; targeting of mRNA for destruction involved in RNA interference [GO:0030423] 3'-5' DNA/RNA helicase activity [GO:0033679]; 3'-5' DNA helicase activity [GO:0043138]; 3'-5' RNA helicase activity [GO:0034458]; ATPase activity [GO:0016887]; ATP binding [GO:0005524]; chromatin DNA binding [GO:0031490]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; DNA replication origin binding [GO:0003688]; double-stranded DNA binding [GO:0003690]; double-stranded RNA binding [GO:0003725]; importin-alpha family protein binding [GO:0061676]; metal ion binding [GO:0046872]; mRNA binding [GO:0003729]; nucleoside-triphosphatase activity [GO:0017111]; nucleoside-triphosphate diphosphatase activity [GO:0047429]; polysome binding [GO:1905538]; promoter-specific chromatin binding [GO:1990841]; regulatory region RNA binding [GO:0001069]; RISC complex binding [GO:1905172]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; RNA polymerase binding [GO:0070063]; RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO:0000978]; RNA polymerase II complex binding [GO:0000993]; RNA polymerase II transcription factor binding [GO:0001085]; RNA stem-loop binding [GO:0035613]; sequence-specific mRNA binding [GO:1990825]; single-stranded 3'-5' DNA helicase activity [GO:1990518]; single-stranded DNA binding [GO:0003697]; single-stranded RNA binding [GO:0003727]; siRNA binding [GO:0035197]; transcription coactivator activity [GO:0003713]; triplex DNA binding [GO:0045142] GO:0000380; GO:0000978; GO:0000993; GO:0001069; GO:0001085; GO:0003677; GO:0003678; GO:0003688; GO:0003690; GO:0003697; GO:0003713; GO:0003723; GO:0003724; GO:0003725; GO:0003727; GO:0003729; GO:0005524; GO:0005634; GO:0005654; GO:0005726; GO:0005730; GO:0005737; GO:0005813; GO:0005844; GO:0006260; GO:0006353; GO:0006954; GO:0010501; GO:0015629; GO:0016442; GO:0016604; GO:0016887; GO:0017111; GO:0030423; GO:0031490; GO:0032508; GO:0033679; GO:0034458; GO:0035197; GO:0035549; GO:0035613; GO:0036464; GO:0039695; GO:0042788; GO:0043138; GO:0044806; GO:0045087; GO:0045142; GO:0045739; GO:0045740; GO:0045944; GO:0046833; GO:0046872; GO:0047429; GO:0048146; GO:0048511; GO:0050434; GO:0050684; GO:0051028; GO:0051092; GO:0060760; GO:0061676; GO:0070063; GO:0070578; GO:0070922; GO:0070934; GO:0070937; GO:0071356; GO:0071360; GO:0097165; GO:1902741; GO:1903608; GO:1904469; GO:1904973; GO:1905172; GO:1905538; GO:1905698; GO:1990518; GO:1990825; GO:1990841; GO:1990904; GO:2000373; GO:2000637; GO:2000765; GO:2000767; GO:2000778
TRINITY_DN5143_c0_g1_i16 0 63 0 78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN33929_c2_g2_i2 1 86 0 81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN527_c14_g1_i2 0 32 0 111 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN16462_c0_g2_i13 0 51 0 97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN20215_c0_g1_i1 0 61 0 104 sp Q9CAX6 RS142_ARATH 84.7 150 23 0 47 496 1 150 2.3e-67 256.9 RS142_ARATH reviewed 40S ribosomal protein S14-2 RPS14B At3g11510 F24K9.19 Arabidopsis thaliana (Mouse-ear cress) 150 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; polysomal ribosome [GO:0042788] cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; cytosolic small ribosomal subunit [GO:0022627]; nucleolus [GO:0005730]; polysomal ribosome [GO:0042788]; mRNA 5'-UTR binding [GO:0048027]; mRNA binding [GO:0003729]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] mRNA 5'-UTR binding [GO:0048027]; mRNA binding [GO:0003729]; small ribosomal subunit rRNA binding [GO:0070181]; structural constituent of ribosome [GO:0003735] GO:0000028; GO:0000462; GO:0003729; GO:0003735; GO:0005730; GO:0005829; GO:0006412; GO:0022626; GO:0022627; GO:0042788; GO:0048027; GO:0070181
TRINITY_DN20632_c0_g1_i1 0 36 0 93 sp Q9LYZ9 PP362_ARATH 22.8 473 340 12 350 1738 361 818 2.7e-26 122.1 PP362_ARATH reviewed Pentatricopeptide repeat-containing protein At5g02860 At5g02860 F9G14_170 Arabidopsis thaliana (Mouse-ear cress) 819
TRINITY_DN2394_c1_g1_i3 0 37 0 90 sp Q8LC68 NRP2_ARATH 23.9 222 147 5 52 663 9 226 6.2e-18 93.2 NRP2_ARATH reviewed NAP1-related protein 2 (Nucleosome/chromatin assembly factor group A5) (Protein SET homolog 2) NRP2 NFA5 At1g18800 F6A14.10 Arabidopsis thaliana (Mouse-ear cress) 255 double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444] chromatin binding [GO:0003682]; histone binding [GO:0042393] GO:0000724; GO:0003682; GO:0005634; GO:0005737; GO:0005829; GO:0006334; GO:0016444; GO:0042393
TRINITY_DN7324_c0_g1_i1 0 29 0 118 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN13106_c0_g1_i1 0 81 0 114 sp Q21355 GST4_CAEEL 29.3 208 136 4 35 646 3 203 5.8e-15 83.2 GST4_CAEEL reviewed Glutathione S-transferase 4 (EC 2.5.1.18) (CeGST1) (GST class-sigma) gst-4 K08F4.7 Caenorhabditis elegans 207 glutathione metabolic process [GO:0006749] contractile fiber [GO:0043292] contractile fiber [GO:0043292]; glutathione transferase activity [GO:0004364]; glutathione metabolic process [GO:0006749] glutathione transferase activity [GO:0004364] GO:0004364; GO:0006749; GO:0043292
TRINITY_DN2530_c0_g1_i5 0 101 0 172 sp P02640 VILI_CHICK 34 832 475 21 54 2387 15 826 1.6e-121 438.7 VILI_CHICK reviewed Villin-1 VIL1 VIL Gallus gallus (Chicken) 826 actin filament capping [GO:0051693]; actin filament depolymerization [GO:0030042]; actin filament polymerization [GO:0030041]; actin filament severing [GO:0051014]; actin nucleation [GO:0045010]; actin polymerization or depolymerization [GO:0008154]; barbed-end actin filament capping [GO:0051016]; cellular response to epidermal growth factor stimulus [GO:0071364]; cellular response to hepatocyte growth factor stimulus [GO:0035729]; cytoplasmic actin-based contraction involved in cell motility [GO:0060327]; epidermal growth factor receptor signaling pathway [GO:0007173]; positive regulation of actin filament bundle assembly [GO:0032233]; positive regulation of cell migration [GO:0030335]; positive regulation of epithelial cell migration [GO:0010634]; regulation of actin nucleation [GO:0051125]; regulation of cell shape [GO:0008360]; regulation of lamellipodium morphogenesis [GO:2000392]; regulation of wound healing [GO:0061041]; response to bacterium [GO:0009617] actin cytoskeleton [GO:0015629]; actin filament bundle [GO:0032432]; cytoplasm [GO:0005737]; filopodium [GO:0030175]; filopodium tip [GO:0032433]; lamellipodium [GO:0030027]; microvillus [GO:0005902]; ruffle [GO:0001726] actin cytoskeleton [GO:0015629]; actin filament bundle [GO:0032432]; cytoplasm [GO:0005737]; filopodium [GO:0030175]; filopodium tip [GO:0032433]; lamellipodium [GO:0030027]; microvillus [GO:0005902]; ruffle [GO:0001726]; actin filament binding [GO:0051015]; calcium ion binding [GO:0005509]; cysteine-type endopeptidase inhibitor activity involved in apoptotic process [GO:0043027]; lysophosphatidic acid binding [GO:0035727]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; protein homodimerization activity [GO:0042803]; actin filament capping [GO:0051693]; actin filament depolymerization [GO:0030042]; actin filament polymerization [GO:0030041]; actin filament severing [GO:0051014]; actin nucleation [GO:0045010]; actin polymerization or depolymerization [GO:0008154]; barbed-end actin filament capping [GO:0051016]; cellular response to epidermal growth factor stimulus [GO:0071364]; cellular response to hepatocyte growth factor stimulus [GO:0035729]; cytoplasmic actin-based contraction involved in cell motility [GO:0060327]; epidermal growth factor receptor signaling pathway [GO:0007173]; positive regulation of actin filament bundle assembly [GO:0032233]; positive regulation of cell migration [GO:0030335]; positive regulation of epithelial cell migration [GO:0010634]; regulation of actin nucleation [GO:0051125]; regulation of cell shape [GO:0008360]; regulation of lamellipodium morphogenesis [GO:2000392]; regulation of wound healing [GO:0061041]; response to bacterium [GO:0009617] actin filament binding [GO:0051015]; calcium ion binding [GO:0005509]; cysteine-type endopeptidase inhibitor activity involved in apoptotic process [GO:0043027]; lysophosphatidic acid binding [GO:0035727]; phosphatidylinositol-4,5-bisphosphate binding [GO:0005546]; protein homodimerization activity [GO:0042803] GO:0001726; GO:0005509; GO:0005546; GO:0005737; GO:0005902; GO:0007173; GO:0008154; GO:0008360; GO:0009617; GO:0010634; GO:0015629; GO:0030027; GO:0030041; GO:0030042; GO:0030175; GO:0030335; GO:0032233; GO:0032432; GO:0032433; GO:0035727; GO:0035729; GO:0042803; GO:0043027; GO:0045010; GO:0051014; GO:0051015; GO:0051016; GO:0051125; GO:0051693; GO:0060327; GO:0061041; GO:0071364; GO:2000392
TRINITY_DN4589_c0_g2_i1 0 41 0 75 sp Q9H9B1 EHMT1_HUMAN 30 210 108 6 617 1237 776 949 7.4e-11 70.5 EHMT1_HUMAN reviewed Histone-lysine N-methyltransferase EHMT1 (EC 2.1.1.-) (Euchromatic histone-lysine N-methyltransferase 1) (Eu-HMTase1) (G9a-like protein 1) (GLP) (GLP1) (Histone H3-K9 methyltransferase 5) (H3-K9-HMTase 5) (Lysine N-methyltransferase 1D) EHMT1 EUHMTASE1 GLP KIAA1876 KMT1D Homo sapiens (Human) 1298 chromatin organization [GO:0006325]; DNA methylation [GO:0006306]; histone methylation [GO:0016571]; negative regulation of G0 to G1 transition [GO:0070317]; negative regulation of transcription, DNA-templated [GO:0045892]; negative regulation of transcription by RNA polymerase II [GO:0000122]; peptidyl-lysine dimethylation [GO:0018027]; peptidyl-lysine monomethylation [GO:0018026]; positive regulation of cold-induced thermogenesis [GO:0120162]; regulation of embryonic development [GO:0045995]; regulation of signal transduction by p53 class mediator [GO:1901796]; response to fungicide [GO:0060992] chromosome [GO:0005694]; nuclear body [GO:0016604]; nucleoplasm [GO:0005654]; nucleus [GO:0005634] chromosome [GO:0005694]; nuclear body [GO:0016604]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; C2H2 zinc finger domain binding [GO:0070742]; histone methyltransferase activity (H3-K27 specific) [GO:0046976]; histone methyltransferase activity (H3-K9 specific) [GO:0046974]; histone-lysine N-methyltransferase activity [GO:0018024]; methyltransferase activity [GO:0008168]; p53 binding [GO:0002039]; protein-lysine N-methyltransferase activity [GO:0016279]; zinc ion binding [GO:0008270]; chromatin organization [GO:0006325]; DNA methylation [GO:0006306]; histone methylation [GO:0016571]; negative regulation of G0 to G1 transition [GO:0070317]; negative regulation of transcription by RNA polymerase II [GO:0000122]; negative regulation of transcription, DNA-templated [GO:0045892]; peptidyl-lysine dimethylation [GO:0018027]; peptidyl-lysine monomethylation [GO:0018026]; positive regulation of cold-induced thermogenesis [GO:0120162]; regulation of embryonic development [GO:0045995]; regulation of signal transduction by p53 class mediator [GO:1901796]; response to fungicide [GO:0060992] C2H2 zinc finger domain binding [GO:0070742]; histone-lysine N-methyltransferase activity [GO:0018024]; histone methyltransferase activity (H3-K27 specific) [GO:0046976]; histone methyltransferase activity (H3-K9 specific) [GO:0046974]; methyltransferase activity [GO:0008168]; p53 binding [GO:0002039]; protein-lysine N-methyltransferase activity [GO:0016279]; zinc ion binding [GO:0008270] GO:0000122; GO:0002039; GO:0005634; GO:0005654; GO:0005694; GO:0006306; GO:0006325; GO:0008168; GO:0008270; GO:0016279; GO:0016571; GO:0016604; GO:0018024; GO:0018026; GO:0018027; GO:0045892; GO:0045995; GO:0046974; GO:0046976; GO:0060992; GO:0070317; GO:0070742; GO:0120162; GO:1901796
TRINITY_DN894_c0_g1_i35 0 60 0 153 sp Q6GMC7 AK1A1_XENLA 51.2 328 147 4 111 1091 9 324 5.3e-92 340.1 AK1A1_XENLA reviewed Aldo-keto reductase family 1 member A1 (EC 1.1.1.2) (Alcohol dehydrogenase [NADP(+)]) (Aldehyde reductase) akr1a1 Xenopus laevis (African clawed frog) 327 cellular detoxification of aldehyde [GO:0110095] apical plasma membrane [GO:0016324]; cytosol [GO:0005829] apical plasma membrane [GO:0016324]; cytosol [GO:0005829]; alcohol dehydrogenase (NADP+) activity [GO:0008106]; cellular detoxification of aldehyde [GO:0110095] alcohol dehydrogenase (NADP+) activity [GO:0008106] GO:0005829; GO:0008106; GO:0016324; GO:0110095
TRINITY_DN2571_c0_g1_i4 0 28 0 169 sp Q07327 ROP_DROME 65.2 598 187 6 143 1885 1 594 2.3e-217 756.9 ROP_DROME reviewed Protein ROP Rop cs1 CG15811 Drosophila melanogaster (Fruit fly) 597 chemical synaptic transmission [GO:0007268]; exocytosis [GO:0006887]; intracellular protein transport [GO:0006886]; mitotic cytokinesis [GO:0000281]; neurotransmitter secretion [GO:0007269]; ovarian follicle cell development [GO:0030707]; positive regulation of dendrite development [GO:1900006]; regulation of pole plasm oskar mRNA localization [GO:0007317]; response to light stimulus [GO:0009416]; secretion by cell [GO:0032940]; synaptic vesicle priming [GO:0016082]; synaptic vesicle transport [GO:0048489]; vesicle docking involved in exocytosis [GO:0006904]; vesicle-mediated transport [GO:0016192] cytoplasm [GO:0005737]; cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; membrane [GO:0016020]; plasma membrane [GO:0005886]; secretory granule [GO:0030141]; terminal bouton [GO:0043195] cytoplasm [GO:0005737]; cytosol [GO:0005829]; extrinsic component of membrane [GO:0019898]; membrane [GO:0016020]; plasma membrane [GO:0005886]; secretory granule [GO:0030141]; terminal bouton [GO:0043195]; SNARE binding [GO:0000149]; syntaxin binding [GO:0019905]; chemical synaptic transmission [GO:0007268]; exocytosis [GO:0006887]; intracellular protein transport [GO:0006886]; mitotic cytokinesis [GO:0000281]; neurotransmitter secretion [GO:0007269]; ovarian follicle cell development [GO:0030707]; positive regulation of dendrite development [GO:1900006]; regulation of pole plasm oskar mRNA localization [GO:0007317]; response to light stimulus [GO:0009416]; secretion by cell [GO:0032940]; synaptic vesicle priming [GO:0016082]; synaptic vesicle transport [GO:0048489]; vesicle docking involved in exocytosis [GO:0006904]; vesicle-mediated transport [GO:0016192] SNARE binding [GO:0000149]; syntaxin binding [GO:0019905] GO:0000149; GO:0000281; GO:0005737; GO:0005829; GO:0005886; GO:0006886; GO:0006887; GO:0006904; GO:0007268; GO:0007269; GO:0007317; GO:0009416; GO:0016020; GO:0016082; GO:0016192; GO:0019898; GO:0019905; GO:0030141; GO:0030707; GO:0032940; GO:0043195; GO:0048489; GO:1900006
TRINITY_DN15481_c0_g1_i1 0 54 0 159 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN108947_c0_g1_i1 0 51 0 91 sp Q18409 RSP6_CAEEL 39.5 86 45 3 125 382 4 82 8.8e-10 65.5 RSP6_CAEEL reviewed Probable splicing factor, arginine/serine-rich 6 (CeSRp20) (RNA-binding protein srp-1) rsp-6 srp-1 C33H5.12 Caenorhabditis elegans 179 cell differentiation [GO:0030154]; gonad development [GO:0008406]; mRNA cis splicing, via spliceosome [GO:0045292]; mRNA splicing, via spliceosome [GO:0000398]; multicellular organism development [GO:0007275]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of DNA-templated transcription, termination [GO:0031554]; RNA splicing [GO:0008380] nuclear speck [GO:0016607]; nucleus [GO:0005634] nuclear speck [GO:0016607]; nucleus [GO:0005634]; RNA binding [GO:0003723]; cell differentiation [GO:0030154]; gonad development [GO:0008406]; mRNA cis splicing, via spliceosome [GO:0045292]; mRNA splicing, via spliceosome [GO:0000398]; multicellular organism development [GO:0007275]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of DNA-templated transcription, termination [GO:0031554]; RNA splicing [GO:0008380] RNA binding [GO:0003723] GO:0000381; GO:0000398; GO:0003723; GO:0005634; GO:0007275; GO:0008380; GO:0008406; GO:0016607; GO:0030154; GO:0031554; GO:0045292
TRINITY_DN4549_c0_g1_i2 0 33 0 167 sp Q5H8A6 CASTO_LOTJA 33.9 546 302 14 177 1712 172 692 1.6e-73 279.6 CASTO_LOTJA reviewed Ion channel CASTOR CASTOR Lotus japonicus (Lotus corniculatus var. japonicus) 853 ion transport [GO:0006811] integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965] integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965]; ion transport [GO:0006811] GO:0006811; GO:0016021; GO:0031965
TRINITY_DN2216_c0_g1_i4 405 594 0 199 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN83977_c0_g1_i3 2035 7431 4205 10554 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN5443_c0_g1_i18 0 57 0 133 sp Q502K3 ANR52_DANRE 28.6 217 140 3 664 1305 147 351 1.7e-15 86.3 ANR52_DANRE reviewed Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C (PP6-ARS-C) (Serine/threonine-protein phosphatase 6 regulatory subunit ARS-C) ankrd52 zgc:112069 Danio rerio (Zebrafish) (Brachydanio rerio) 1071
TRINITY_DN19460_c0_g1_i1 0 39 0 92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN476_c0_g1_i1 0 43 0 109 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN1469_c0_g1_i10 0 63 0 89 sp Q9TW32 PPIB_DICDI 75 168 42 0 113 616 30 197 1e-70 268.9 PPIB_DICDI reviewed Peptidyl-prolyl cis-trans isomerase B (PPIase B) (EC 5.2.1.8) (Cyclophilin B) (Rotamase B) cypB cyp2 DDB_G0269120 Dictyostelium discoideum (Slime mold) 197 protein folding [GO:0006457]; protein peptidyl-prolyl isomerization [GO:0000413] cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; intracellular membrane-bounded organelle [GO:0043231] cytoplasm [GO:0005737]; endoplasmic reticulum [GO:0005783]; intracellular membrane-bounded organelle [GO:0043231]; cyclosporin A binding [GO:0016018]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755]; protein folding [GO:0006457]; protein peptidyl-prolyl isomerization [GO:0000413] cyclosporin A binding [GO:0016018]; peptidyl-prolyl cis-trans isomerase activity [GO:0003755] GO:0000413; GO:0003755; GO:0005737; GO:0005783; GO:0006457; GO:0016018; GO:0043231
TRINITY_DN9522_c0_g1_i23 94 0 44 0 sp Q1L8G6 AKIB1_DANRE 46.9 780 360 8 483 2771 1 743 2.2e-200 702.2 AKIB1_DANRE reviewed Ankyrin repeat and IBR domain-containing protein 1 (EC 2.3.2.31) ankib1 si:dkey-231l1.6 Danio rerio (Zebrafish) (Brachydanio rerio) 1060 positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent protein catabolic process [GO:0006511] cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151] cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]; metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent protein catabolic process [GO:0006511] metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630] GO:0000151; GO:0000209; GO:0005737; GO:0006511; GO:0031624; GO:0032436; GO:0046872; GO:0061630
TRINITY_DN13034_c0_g1_i22 0 61 0 108 sp Q38896 CSP4_ARATH 59 78 31 1 119 352 14 90 9.6e-16 85.9 CSP4_ARATH reviewed Cold shock domain-containing protein 4 (AtCSP4) (Glycine-rich protein 2b) (AtGRP2b) CSP4 GRP2B At2g21060 F26H11.18 Arabidopsis thaliana (Mouse-ear cress) 201 embryo development ending in seed dormancy [GO:0009793]; fruit development [GO:0010154]; response to cold [GO:0009409] cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634] cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]; DNA binding [GO:0003677]; mRNA binding [GO:0003729]; zinc ion binding [GO:0008270]; embryo development ending in seed dormancy [GO:0009793]; fruit development [GO:0010154]; response to cold [GO:0009409] DNA binding [GO:0003677]; mRNA binding [GO:0003729]; zinc ion binding [GO:0008270] GO:0003677; GO:0003729; GO:0005634; GO:0005730; GO:0005829; GO:0008270; GO:0009409; GO:0009793; GO:0010154
TRINITY_DN6978_c0_g1_i27 0 60 0 204 sp P43508 CPR4_CAEEL 34.3 289 149 11 140 943 67 335 7.3e-37 158.3 CPR4_CAEEL reviewed Cathepsin B-like cysteine proteinase 4 (EC 3.4.22.-) (Cysteine protease-related 4) cpr-4 F44C4.3 Caenorhabditis elegans 335 cellular response to gamma radiation [GO:0071480]; cellular response to UV [GO:0034644]; proteolysis involved in cellular protein catabolic process [GO:0051603] extracellular region [GO:0005576]; extracellular space [GO:0005615]; lysosome [GO:0005764] extracellular region [GO:0005576]; extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; cellular response to gamma radiation [GO:0071480]; cellular response to UV [GO:0034644]; proteolysis involved in cellular protein catabolic process [GO:0051603] cysteine-type endopeptidase activity [GO:0004197] GO:0004197; GO:0005576; GO:0005615; GO:0005764; GO:0034644; GO:0051603; GO:0071480
TRINITY_DN1470_c0_g1_i7 89 0 108 0 sp O97172 U729_DROME 39.8 83 40 2 237 479 1 75 9.8e-10 68.6 U729_DROME reviewed UPF0729 protein CG18508 CG18508 Drosophila melanogaster (Fruit fly) 99
TRINITY_DN3766_c0_g1_i18 2183 443 607 93 sp Q9XYC2 RL15_FAXLI 95.2 146 7 0 339 776 59 204 9e-76 285 RL15_FAXLI reviewed 60S ribosomal protein L15 RPL15 Faxonius limosus (Spinycheek crayfish) (Orconectes limosus) 204 translation [GO:0006412] ribosome [GO:0005840] ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005840; GO:0006412
TRINITY_DN932_c1_g1_i21 241 24 48 0 sp Q4R562 ARRB1_MACFA 61.9 415 130 4 272 1516 4 390 6.1e-142 507.7 ARRB1_MACFA reviewed Beta-arrestin-1 (Arrestin beta-1) ARRB1 QccE-17776 Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey) 410 negative regulation of Notch signaling pathway [GO:0045746]; positive regulation of protein phosphorylation [GO:0001934]; positive regulation of receptor internalization [GO:0002092]; protein transport [GO:0015031]; signal transduction [GO:0007165]; ubiquitin-dependent protein catabolic process [GO:0006511] clathrin-coated pit [GO:0005905]; cytoplasmic vesicle [GO:0031410]; nucleus [GO:0005634]; pseudopodium [GO:0031143] clathrin-coated pit [GO:0005905]; cytoplasmic vesicle [GO:0031410]; nucleus [GO:0005634]; pseudopodium [GO:0031143]; negative regulation of Notch signaling pathway [GO:0045746]; positive regulation of protein phosphorylation [GO:0001934]; positive regulation of receptor internalization [GO:0002092]; protein transport [GO:0015031]; signal transduction [GO:0007165]; ubiquitin-dependent protein catabolic process [GO:0006511] GO:0001934; GO:0002092; GO:0005634; GO:0005905; GO:0006511; GO:0007165; GO:0015031; GO:0031143; GO:0031410; GO:0045746
TRINITY_DN20212_c0_g1_i1 0 34 0 107 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN5952_c0_g1_i3 0 74 0 64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN13897_c0_g1_i1 0 41 0 80 sp Q4E123 MTR1_TRYCC 31.3 335 194 9 137 1096 46 359 1.2e-30 136 MTR1_TRYCC reviewed Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 (EC 2.1.1.57) (Cap1 2'O-ribose methyltransferase 1) (MTr1) Tc00.1047053506247.320 Trypanosoma cruzi (strain CL Brener) 362 7-methylguanosine mRNA capping [GO:0006370]; cap1 mRNA methylation [GO:0097309]; mRNA methylation [GO:0080009] nucleus [GO:0005634] nucleus [GO:0005634]; mRNA (nucleoside-2'-O-)-methyltransferase activity [GO:0004483]; 7-methylguanosine mRNA capping [GO:0006370]; cap1 mRNA methylation [GO:0097309]; mRNA methylation [GO:0080009] mRNA (nucleoside-2'-O-)-methyltransferase activity [GO:0004483] GO:0004483; GO:0005634; GO:0006370; GO:0080009; GO:0097309
TRINITY_DN713_c0_g1_i19 0 37 0 112 sp A4Z943 ZBED5_BOVIN 35.5 557 319 10 541 2133 152 694 1.2e-88 331.3 ZBED5_BOVIN reviewed Zinc finger BED domain-containing protein 5 (Transposon-derived Buster1 transposase-like protein) ZBED5 Bos taurus (Bovine) 694 DNA binding [GO:0003677]; metal ion binding [GO:0046872] DNA binding [GO:0003677]; metal ion binding [GO:0046872] GO:0003677; GO:0046872
TRINITY_DN11884_c0_g1_i1 0 89 0 116 sp Q8LC68 NRP2_ARATH 28.1 203 132 3 127 693 23 225 5.5e-21 103.2 NRP2_ARATH reviewed NAP1-related protein 2 (Nucleosome/chromatin assembly factor group A5) (Protein SET homolog 2) NRP2 NFA5 At1g18800 F6A14.10 Arabidopsis thaliana (Mouse-ear cress) 255 double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444] chromatin binding [GO:0003682]; histone binding [GO:0042393] GO:0000724; GO:0003682; GO:0005634; GO:0005737; GO:0005829; GO:0006334; GO:0016444; GO:0042393
TRINITY_DN90_c1_g1_i7 0 147 0 35 sp Q9LT78 RD21C_ARATH 41.5 313 164 8 127 1041 43 344 7.8e-59 229.6 RD21C_ARATH reviewed Probable cysteine protease RD21C (EC 3.4.22.-) RD21C At3g19390 MLD14.12 Arabidopsis thaliana (Mouse-ear cress) 452 proteolysis involved in cellular protein catabolic process [GO:0051603] extracellular space [GO:0005615]; lysosome [GO:0005764] extracellular space [GO:0005615]; lysosome [GO:0005764]; cysteine-type endopeptidase activity [GO:0004197]; proteolysis involved in cellular protein catabolic process [GO:0051603] cysteine-type endopeptidase activity [GO:0004197] GO:0004197; GO:0005615; GO:0005764; GO:0051603
TRINITY_DN1237_c0_g1_i22 0 96 0 21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN3042_c0_g1_i3 0 38 0 90 sp Q72JR7 TAL_THET2 26 262 124 10 136 912 6 200 9.5e-09 63.2 TAL_THET2 reviewed Probable transaldolase (EC 2.2.1.2) tal TT_C0701 Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) 223 carbohydrate metabolic process [GO:0005975]; pentose-phosphate shunt [GO:0006098] cytoplasm [GO:0005737] cytoplasm [GO:0005737]; aldehyde-lyase activity [GO:0016832]; sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity [GO:0004801]; carbohydrate metabolic process [GO:0005975]; pentose-phosphate shunt [GO:0006098] aldehyde-lyase activity [GO:0016832]; sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity [GO:0004801] GO:0004801; GO:0005737; GO:0005975; GO:0006098; GO:0016832
TRINITY_DN1961_c0_g1_i22 0 44 0 109 sp P0CS09 TRM61_CRYNB 47.2 235 119 3 68 766 14 245 5.6e-55 216.5 TRM61_CRYNB reviewed tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 (EC 2.1.1.220) (tRNA(m1A58)-methyltransferase subunit TRM61) (tRNA(m1A58)MTase subunit TRM61) TRM61 CNBL1390 Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (Filobasidiella neoformans) 433 nucleus [GO:0005634]; tRNA (m1A) methyltransferase complex [GO:0031515] nucleus [GO:0005634]; tRNA (m1A) methyltransferase complex [GO:0031515]; tRNA (adenine-N1-)-methyltransferase activity [GO:0016429] tRNA (adenine-N1-)-methyltransferase activity [GO:0016429] GO:0005634; GO:0016429; GO:0031515
TRINITY_DN64_c0_g1_i35 182 0 23 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN6197_c0_g1_i2 0 21 0 114 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN15144_c0_g1_i9 106 1 97 0 sp Q6P4R8 NFRKB_HUMAN 48.4 318 147 5 1603 2556 363 663 1.6e-80 303.1 NFRKB_HUMAN reviewed Nuclear factor related to kappa-B-binding protein (DNA-binding protein R kappa-B) (INO80 complex subunit G) NFRKB INO80G Homo sapiens (Human) 1299 DNA recombination [GO:0006310]; DNA repair [GO:0006281]; inflammatory response [GO:0006954]; protein deubiquitination [GO:0016579]; transcription by RNA polymerase II [GO:0006366] Ino80 complex [GO:0031011]; nucleoplasm [GO:0005654]; nucleus [GO:0005634] Ino80 complex [GO:0031011]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; DNA binding [GO:0003677]; protease binding [GO:0002020]; DNA recombination [GO:0006310]; DNA repair [GO:0006281]; inflammatory response [GO:0006954]; protein deubiquitination [GO:0016579]; transcription by RNA polymerase II [GO:0006366] DNA binding [GO:0003677]; protease binding [GO:0002020] GO:0002020; GO:0003677; GO:0005634; GO:0005654; GO:0006281; GO:0006310; GO:0006366; GO:0006954; GO:0016579; GO:0031011
TRINITY_DN752_c0_g1_i18 0 42 0 94 sp Q9LEB3 RBP47_NICPL 24.6 345 213 12 101 1126 72 372 8.9e-10 67.4 RBP47_NICPL reviewed Polyadenylate-binding protein RBP47 (Poly(A)-binding protein RBP47) (RNA-binding protein 47) (NplRBP47) RBP47 Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco) 428 cellular response to heat [GO:0034605]; mRNA processing [GO:0006397] cytoplasmic stress granule [GO:0010494]; nucleus [GO:0005634] cytoplasmic stress granule [GO:0010494]; nucleus [GO:0005634]; poly(A) binding [GO:0008143]; cellular response to heat [GO:0034605]; mRNA processing [GO:0006397] poly(A) binding [GO:0008143] GO:0005634; GO:0006397; GO:0008143; GO:0010494; GO:0034605
TRINITY_DN6514_c0_g1_i1 0 28 0 129 sp Q8C5Q4 GRSF1_MOUSE 28 243 118 8 939 1526 242 474 1.3e-15 86.3 GRSF1_MOUSE reviewed G-rich sequence factor 1 (GRSF-1) Grsf1 Mus musculus (Mouse) 479 anterior/posterior pattern specification [GO:0009952]; morphogenesis of embryonic epithelium [GO:0016331]; mRNA processing [GO:0006397]; positive regulation of mitochondrial RNA catabolic process [GO:0000962]; regulation of RNA splicing [GO:0043484]; tRNA processing [GO:0008033] mitochondrial nucleoid [GO:0042645]; mitochondrion [GO:0005739]; nucleoplasm [GO:0005654]; ribonucleoprotein complex [GO:1990904]; ribonucleoprotein granule [GO:0035770] mitochondrial nucleoid [GO:0042645]; mitochondrion [GO:0005739]; nucleoplasm [GO:0005654]; ribonucleoprotein complex [GO:1990904]; ribonucleoprotein granule [GO:0035770]; RNA binding [GO:0003723]; anterior/posterior pattern specification [GO:0009952]; morphogenesis of embryonic epithelium [GO:0016331]; mRNA processing [GO:0006397]; positive regulation of mitochondrial RNA catabolic process [GO:0000962]; regulation of RNA splicing [GO:0043484]; tRNA processing [GO:0008033] RNA binding [GO:0003723] GO:0000962; GO:0003723; GO:0005654; GO:0005739; GO:0006397; GO:0008033; GO:0009952; GO:0016331; GO:0035770; GO:0042645; GO:0043484; GO:1990904
TRINITY_DN6571_c0_g1_i1 0 74 0 154 sp P0DKJ9 PRS7A_ORYSJ 75 424 102 2 79 1347 6 426 9.7e-190 664.5 PRS7A_ORYSJ reviewed 26S proteasome regulatory subunit 7A (26S proteasome AAA-ATPase subunit RPT1A) (26S proteasome subunit 7A) (Regulatory particle triple-A ATPase subunit 1A) RPT1A Os02g0784700 LOC_Os02g54340 OJ1715_H01.26 Oryza sativa subsp. japonica (Rice) 426 positive regulation of RNA polymerase II transcription preinitiation complex assembly [GO:0045899]; protein catabolic process [GO:0030163] cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome regulatory particle, base subcomplex [GO:0008540] cytoplasm [GO:0005737]; nucleus [GO:0005634]; proteasome regulatory particle, base subcomplex [GO:0008540]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; TBP-class protein binding [GO:0017025]; positive regulation of RNA polymerase II transcription preinitiation complex assembly [GO:0045899]; protein catabolic process [GO:0030163] ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; TBP-class protein binding [GO:0017025] GO:0005524; GO:0005634; GO:0005737; GO:0008540; GO:0016787; GO:0017025; GO:0030163; GO:0045899
TRINITY_DN108285_c0_g1_i1 0 54 0 61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN57501_c0_g1_i2 0 70 19 242 sp P98164 LRP2_HUMAN 37.8 4708 2571 110 53 13579 28 4575 0 3059.2 LRP2_HUMAN reviewed Low-density lipoprotein receptor-related protein 2 (LRP-2) (Glycoprotein 330) (gp330) (Megalin) LRP2 Homo sapiens (Human) 4655 amyloid-beta clearance [GO:0097242]; aorta development [GO:0035904]; cell population proliferation [GO:0008283]; cellular response to growth factor stimulus [GO:0071363]; coronary artery morphogenesis [GO:0060982]; endocytosis [GO:0006897]; folate import across plasma membrane [GO:1904447]; forebrain development [GO:0030900]; lipid metabolic process [GO:0006629]; male gonad development [GO:0008584]; membrane organization [GO:0061024]; metal ion transport [GO:0030001]; negative regulation of apoptotic process [GO:0043066]; negative regulation of BMP signaling pathway [GO:0030514]; neural tube closure [GO:0001843]; neuron projection arborization [GO:0140058]; outflow tract septum morphogenesis [GO:0003148]; positive regulation of lysosomal protein catabolic process [GO:1905167]; positive regulation of neurogenesis [GO:0050769]; positive regulation of oligodendrocyte progenitor proliferation [GO:0070447]; positive regulation of protein kinase B signaling [GO:0051897]; protein transport [GO:0015031]; pulmonary artery morphogenesis [GO:0061156]; receptor-mediated endocytosis [GO:0006898]; response to leptin [GO:0044321]; retinoid metabolic process [GO:0001523]; secondary heart field specification [GO:0003139]; sensory perception of sound [GO:0007605]; transcytosis [GO:0045056]; transport across blood-brain barrier [GO:0150104]; vagina development [GO:0060068]; ventricular compact myocardium morphogenesis [GO:0003223]; ventricular septum development [GO:0003281]; vitamin D metabolic process [GO:0042359] apical plasma membrane [GO:0016324]; axon [GO:0030424]; brush border membrane [GO:0031526]; clathrin-coated pit [GO:0005905]; clathrin-coated vesicle membrane [GO:0030665]; dendrite [GO:0030425]; endocytic vesicle [GO:0030139]; endoplasmic reticulum [GO:0005783]; endosome lumen [GO:0031904]; external side of plasma membrane [GO:0009897]; extracellular exosome [GO:0070062]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; lysosomal membrane [GO:0005765]; lysosome [GO:0005764]; plasma membrane [GO:0005886]; receptor complex [GO:0043235] apical plasma membrane [GO:0016324]; axon [GO:0030424]; brush border membrane [GO:0031526]; clathrin-coated pit [GO:0005905]; clathrin-coated vesicle membrane [GO:0030665]; dendrite [GO:0030425]; endocytic vesicle [GO:0030139]; endoplasmic reticulum [GO:0005783]; endosome lumen [GO:0031904]; external side of plasma membrane [GO:0009897]; extracellular exosome [GO:0070062]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; lysosomal membrane [GO:0005765]; lysosome [GO:0005764]; plasma membrane [GO:0005886]; receptor complex [GO:0043235]; calcium ion binding [GO:0005509]; chaperone binding [GO:0051087]; drug binding [GO:0008144]; insulin-like growth factor I binding [GO:0031994]; protein transporter activity [GO:0140318]; SH3 domain binding [GO:0017124]; amyloid-beta clearance [GO:0097242]; aorta development [GO:0035904]; cell population proliferation [GO:0008283]; cellular response to growth factor stimulus [GO:0071363]; coronary artery morphogenesis [GO:0060982]; endocytosis [GO:0006897]; folate import across plasma membrane [GO:1904447]; forebrain development [GO:0030900]; lipid metabolic process [GO:0006629]; male gonad development [GO:0008584]; membrane organization [GO:0061024]; metal ion transport [GO:0030001]; negative regulation of apoptotic process [GO:0043066]; negative regulation of BMP signaling pathway [GO:0030514]; neural tube closure [GO:0001843]; neuron projection arborization [GO:0140058]; outflow tract septum morphogenesis [GO:0003148]; positive regulation of lysosomal protein catabolic process [GO:1905167]; positive regulation of neurogenesis [GO:0050769]; positive regulation of oligodendrocyte progenitor proliferation [GO:0070447]; positive regulation of protein kinase B signaling [GO:0051897]; protein transport [GO:0015031]; pulmonary artery morphogenesis [GO:0061156]; receptor-mediated endocytosis [GO:0006898]; response to leptin [GO:0044321]; retinoid metabolic process [GO:0001523]; secondary heart field specification [GO:0003139]; sensory perception of sound [GO:0007605]; transcytosis [GO:0045056]; transport across blood-brain barrier [GO:0150104]; vagina development [GO:0060068]; ventricular compact myocardium morphogenesis [GO:0003223]; ventricular septum development [GO:0003281]; vitamin D metabolic process [GO:0042359] calcium ion binding [GO:0005509]; chaperone binding [GO:0051087]; drug binding [GO:0008144]; insulin-like growth factor I binding [GO:0031994]; protein transporter activity [GO:0140318]; SH3 domain binding [GO:0017124] GO:0001523; GO:0001843; GO:0003139; GO:0003148; GO:0003223; GO:0003281; GO:0005509; GO:0005764; GO:0005765; GO:0005783; GO:0005794; GO:0005886; GO:0005905; GO:0006629; GO:0006897; GO:0006898; GO:0007605; GO:0008144; GO:0008283; GO:0008584; GO:0009897; GO:0015031; GO:0016021; GO:0016324; GO:0017124; GO:0030001; GO:0030139; GO:0030424; GO:0030425; GO:0030514; GO:0030665; GO:0030900; GO:0031526; GO:0031904; GO:0031994; GO:0035904; GO:0042359; GO:0043066; GO:0043235; GO:0044321; GO:0045056; GO:0050769; GO:0051087; GO:0051897; GO:0060068; GO:0060982; GO:0061024; GO:0061156; GO:0070062; GO:0070447; GO:0071363; GO:0097242; GO:0140058; GO:0140318; GO:0150104; GO:1904447; GO:1905167
TRINITY_DN20103_c0_g1_i1 0 42 0 76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN46552_c0_g1_i4 0 41 0 85 sp Q9TZM3 LRK1_CAEEL 32.4 2433 1185 61 641 7735 351 2391 0 1086.2 LRK1_CAEEL reviewed Leucine-rich repeat serine/threonine-protein kinase 1 (EC 2.7.11.1) (Leucine-rich repeats, ras-like domain, kinase protein 1) (PARK8-related kinase) lrk-1 T27C10.6 Caenorhabditis elegans 2393 axon extension involved in axon guidance [GO:0048846]; cellular protein localization [GO:0034613]; negative regulation of neuron death [GO:1901215]; response to endoplasmic reticulum stress [GO:0034976]; response to oxidative stress [GO:0006979]; synaptic vesicle transport [GO:0048489] cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; neuronal cell body [GO:0043025] cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; neuronal cell body [GO:0043025]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; axon extension involved in axon guidance [GO:0048846]; cellular protein localization [GO:0034613]; negative regulation of neuron death [GO:1901215]; response to endoplasmic reticulum stress [GO:0034976]; response to oxidative stress [GO:0006979]; synaptic vesicle transport [GO:0048489] ATP binding [GO:0005524]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674] GO:0004674; GO:0005524; GO:0005525; GO:0005737; GO:0005794; GO:0006979; GO:0034613; GO:0034976; GO:0043025; GO:0046872; GO:0048489; GO:0048846; GO:1901215
TRINITY_DN1430_c0_g1_i1 0 43 1 197 sp Q8K4K3 TRIB2_MOUSE 48.7 273 131 6 327 1127 40 309 1.5e-63 246.9 TRIB2_MOUSE reviewed Tribbles homolog 2 (TRB-2) Trib2 Mus musculus (Mouse) 343 negative regulation of DNA-binding transcription factor activity [GO:0043433]; negative regulation of fat cell differentiation [GO:0045599]; negative regulation of interleukin-10 biosynthetic process [GO:0045081]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; positive regulation of ubiquitin-protein transferase activity [GO:0051443]; protein phosphorylation [GO:0006468]; regulation of MAP kinase activity [GO:0043405] cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; nucleus [GO:0005634] cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; nucleus [GO:0005634]; mitogen-activated protein kinase kinase binding [GO:0031434]; protein kinase inhibitor activity [GO:0004860]; transcription factor binding [GO:0008134]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase regulator activity [GO:0055106]; negative regulation of DNA-binding transcription factor activity [GO:0043433]; negative regulation of fat cell differentiation [GO:0045599]; negative regulation of interleukin-10 biosynthetic process [GO:0045081]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; positive regulation of ubiquitin-protein transferase activity [GO:0051443]; protein phosphorylation [GO:0006468]; regulation of MAP kinase activity [GO:0043405] mitogen-activated protein kinase kinase binding [GO:0031434]; protein kinase inhibitor activity [GO:0004860]; transcription factor binding [GO:0008134]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase regulator activity [GO:0055106] GO:0004860; GO:0005634; GO:0005737; GO:0005856; GO:0006468; GO:0008134; GO:0031434; GO:0031625; GO:0032436; GO:0043405; GO:0043433; GO:0045081; GO:0045599; GO:0051443; GO:0055106
TRINITY_DN4_c0_g1_i32 0 101 0 69 sp P0CG82 UBIQP_TETPY 98.7 305 4 0 57 971 1 305 3.8e-164 579.7 UBIQP_TETPY reviewed Polyubiquitin [Cleaved into: Ubiquitin] TU20 Tetrahymena pyriformis 381 cytoplasm [GO:0005737]; nucleus [GO:0005634] cytoplasm [GO:0005737]; nucleus [GO:0005634] GO:0005634; GO:0005737
TRINITY_DN11719_c0_g1_i4 0 37 0 133 sp P45974 UBP5_HUMAN 35.8 871 434 23 108 2402 4 855 1.3e-133 478.8 UBP5_HUMAN reviewed Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.4.19.12) (Deubiquitinating enzyme 5) (Isopeptidase T) (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) USP5 ISOT Homo sapiens (Human) 858 positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein deubiquitination [GO:0016579]; protein K48-linked deubiquitination [GO:0071108]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511] cytosol [GO:0005829]; lysosome [GO:0005764]; nucleus [GO:0005634] cytosol [GO:0005829]; lysosome [GO:0005764]; nucleus [GO:0005634]; cysteine-type endopeptidase activity [GO:0004197]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; ubiquitin binding [GO:0043130]; zinc ion binding [GO:0008270]; positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein deubiquitination [GO:0016579]; protein K48-linked deubiquitination [GO:0071108]; protein ubiquitination [GO:0016567]; ubiquitin-dependent protein catabolic process [GO:0006511] cysteine-type endopeptidase activity [GO:0004197]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; thiol-dependent ubiquitinyl hydrolase activity [GO:0036459]; ubiquitin binding [GO:0043130]; zinc ion binding [GO:0008270] GO:0004197; GO:0004843; GO:0005634; GO:0005764; GO:0005829; GO:0006511; GO:0008270; GO:0016567; GO:0016579; GO:0032436; GO:0036459; GO:0043130; GO:0071108
TRINITY_DN11898_c1_g1_i8 0 23 0 109 sp Q6AZT7 NPHP3_XENLA 28.4 162 116 0 3303 3788 1079 1240 8.1e-12 75.1 NPHP3_XENLA reviewed Nephrocystin-3 nphp3 Xenopus laevis (African clawed frog) 1300 cilium assembly [GO:0060271]; convergent extension involved in gastrulation [GO:0060027]; negative regulation of canonical Wnt signaling pathway [GO:0090090]; regulation of Wnt signaling pathway, planar cell polarity pathway [GO:2000095]; Wnt signaling pathway [GO:0016055] cilium [GO:0005929] cilium [GO:0005929]; cilium assembly [GO:0060271]; convergent extension involved in gastrulation [GO:0060027]; negative regulation of canonical Wnt signaling pathway [GO:0090090]; regulation of Wnt signaling pathway, planar cell polarity pathway [GO:2000095]; Wnt signaling pathway [GO:0016055] GO:0005929; GO:0016055; GO:0060027; GO:0060271; GO:0090090; GO:2000095
TRINITY_DN8869_c0_g1_i3 0 38 0 80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN10621_c0_g1_i1 0 28 0 116 sp Q3TCH7 CUL4A_MOUSE 32.5 653 401 15 432 2345 132 759 4e-84 314.3 CUL4A_MOUSE reviewed Cullin-4A (CUL-4A) Cul4a Mus musculus (Mouse) 759 cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281]; hemopoiesis [GO:0030097]; in utero embryonic development [GO:0001701]; negative regulation of granulocyte differentiation [GO:0030853]; positive regulation of cell population proliferation [GO:0008284]; positive regulation of G1/S transition of mitotic cell cycle [GO:1900087]; positive regulation of protein catabolic process [GO:0045732]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; regulation of DNA damage checkpoint [GO:2000001]; regulation of nucleotide-excision repair [GO:2000819]; regulation of protein metabolic process [GO:0051246]; rhythmic process [GO:0048511]; ribosome biogenesis [GO:0042254]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146]; somatic stem cell population maintenance [GO:0035019]; ubiquitin-dependent protein catabolic process [GO:0006511]; viral process [GO:0016032] Cul4A-RING E3 ubiquitin ligase complex [GO:0031464]; Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; cullin-RING ubiquitin ligase complex [GO:0031461]; SCF ubiquitin ligase complex [GO:0019005] Cul4-RING E3 ubiquitin ligase complex [GO:0080008]; Cul4A-RING E3 ubiquitin ligase complex [GO:0031464]; cullin-RING ubiquitin ligase complex [GO:0031461]; SCF ubiquitin ligase complex [GO:0019005]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]; cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281]; hemopoiesis [GO:0030097]; in utero embryonic development [GO:0001701]; negative regulation of granulocyte differentiation [GO:0030853]; positive regulation of cell population proliferation [GO:0008284]; positive regulation of G1/S transition of mitotic cell cycle [GO:1900087]; positive regulation of protein catabolic process [GO:0045732]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]; regulation of DNA damage checkpoint [GO:2000001]; regulation of nucleotide-excision repair [GO:2000819]; regulation of protein metabolic process [GO:0051246]; rhythmic process [GO:0048511]; ribosome biogenesis [GO:0042254]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146]; somatic stem cell population maintenance [GO:0035019]; ubiquitin-dependent protein catabolic process [GO:0006511]; viral process [GO:0016032] ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842] GO:0001701; GO:0004842; GO:0006281; GO:0006511; GO:0006974; GO:0008284; GO:0016032; GO:0016567; GO:0019005; GO:0030097; GO:0030853; GO:0031146; GO:0031461; GO:0031464; GO:0031625; GO:0035019; GO:0042254; GO:0043161; GO:0045732; GO:0048511; GO:0051246; GO:0080008; GO:1900087; GO:2000001; GO:2000819
TRINITY_DN1396_c0_g1_i5 0 65 0 125 sp O61570 RL38_OSTOS 64.3 70 25 0 41 250 1 70 2.2e-17 90.5 RL38_OSTOS reviewed 60S ribosomal protein L38 rpl-38 Ostertagia ostertagi (Brown stomach worm) (Strongylus ostertagi) 70 translation [GO:0006412] ribosome [GO:0005840] ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005840; GO:0006412
TRINITY_DN27209_c0_g1_i1 0 108 0 93 sp Q43292 RL372_ARATH 67.4 89 29 0 48 314 1 89 7.1e-29 128.3 RL372_ARATH reviewed 60S ribosomal protein L37-2 RPL37B At1g52300 F19K6.12 Arabidopsis thaliana (Mouse-ear cress) 95 translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; nucleus [GO:0005634]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] metal ion binding [GO:0046872]; RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735] GO:0003723; GO:0003735; GO:0005634; GO:0006412; GO:0019843; GO:0022625; GO:0022626; GO:0046872
TRINITY_DN1988_c1_g1_i12 0 28 0 224 sp P22953 MD37E_ARATH 58.3 551 219 5 532 2160 8 555 1.7e-171 604.7 HS701_ARATH reviewed Heat shock 70 kDa protein 1 (Heat shock cognate 70 kDa protein 1) (Heat shock cognate protein 70-1) (AtHsc70-1) (Heat shock protein 70-1) (AtHsp70-1) (Protein EARLY-RESPONSIVE TO DEHYDRATION 2) HSP70-1 ERD2 HSC70-1 MED37_4 MED37E At5g02500 T22P11.90 Arabidopsis thaliana (Mouse-ear cress) 651 cellular response to unfolded protein [GO:0034620]; chaperone cofactor-dependent protein refolding [GO:0051085]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to other organism [GO:0098542]; negative regulation of seed germination [GO:0010187]; protein refolding [GO:0042026]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to unfolded protein [GO:0006986]; response to virus [GO:0009615]; stomatal closure [GO:0090332] apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774] apoplast [GO:0048046]; cell wall [GO:0005618]; chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; Golgi apparatus [GO:0005794]; nucleolus [GO:0005730]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; vacuolar membrane [GO:0005774]; ATP binding [GO:0005524]; ATPase activity [GO:0016887]; heat shock protein binding [GO:0031072]; misfolded protein binding [GO:0051787]; protease binding [GO:0002020]; protein folding chaperone [GO:0044183]; unfolded protein binding [GO:0051082]; cellular response to unfolded protein [GO:0034620]; chaperone cofactor-dependent protein refolding [GO:0051085]; defense response to bacterium [GO:0042742]; defense response to fungus [GO:0050832]; defense response to other organism [GO:0098542]; negative regulation of seed germination [GO:0010187]; protein refolding [GO:0042026]; response to cadmium ion [GO:0046686]; response to cold [GO:0009409]; response to heat [GO:0009408]; response to unfolded protein [GO:0006986]; response to virus [GO:0009615]; stomatal closure [GO:0090332] ATPase activity [GO:0016887]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; misfolded protein binding [GO:0051787]; protease binding [GO:0002020]; protein folding chaperone [GO:0044183]; unfolded protein binding [GO:0051082] GO:0002020; GO:0005524; GO:0005618; GO:0005634; GO:0005730; GO:0005737; GO:0005774; GO:0005794; GO:0005829; GO:0005886; GO:0006986; GO:0009408; GO:0009409; GO:0009506; GO:0009507; GO:0009615; GO:0010187; GO:0016887; GO:0022626; GO:0031072; GO:0034620; GO:0042026; GO:0042742; GO:0044183; GO:0046686; GO:0048046; GO:0050832; GO:0051082; GO:0051085; GO:0051787; GO:0090332; GO:0098542
TRINITY_DN2990_c0_g1_i15 0 49 0 91 sp P56286 IF2A_SCHPO 47.8 276 140 3 65 886 4 277 8.1e-65 249.6 IF2A_SCHPO reviewed Eukaryotic translation initiation factor 2 subunit alpha (eIF-2-alpha) tif211 SPAC3G9.09c Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) 306 cytoplasmic translational initiation [GO:0002183]; mitotic G1 DNA damage checkpoint [GO:0031571] cytosol [GO:0005829]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 2B complex [GO:0005851]; eukaryotic translation initiation factor 2 complex [GO:0005850]; multi-eIF complex [GO:0043614] cytosol [GO:0005829]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 2 complex [GO:0005850]; eukaryotic translation initiation factor 2B complex [GO:0005851]; multi-eIF complex [GO:0043614]; ribosome binding [GO:0043022]; RNA binding [GO:0003723]; translation initiation factor activity [GO:0003743]; cytoplasmic translational initiation [GO:0002183]; mitotic G1 DNA damage checkpoint [GO:0031571] ribosome binding [GO:0043022]; RNA binding [GO:0003723]; translation initiation factor activity [GO:0003743] GO:0002183; GO:0003723; GO:0003743; GO:0005829; GO:0005850; GO:0005851; GO:0031571; GO:0033290; GO:0043022; GO:0043614
TRINITY_DN104405_c3_g1_i1 22753 11074 19626 6920 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN4517_c0_g1_i3 0 89 0 71 sp Q6NRI1 ZNT7B_XENLA 53.3 394 138 2 373 1428 1 390 5.7e-97 357.5 ZNT7B_XENLA reviewed Zinc transporter 7-B (ZnT-7-B) (Solute carrier family 30 member 7-B) slc30a7-b znt7-b Xenopus laevis (African clawed frog) 390 zinc ion transport [GO:0006829] Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021] Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; cation transmembrane transporter activity [GO:0008324]; zinc ion transport [GO:0006829] cation transmembrane transporter activity [GO:0008324] GO:0005794; GO:0006829; GO:0008324; GO:0016021
TRINITY_DN1678_c0_g1_i13 0 66 0 114 sp Q3T0U2 RL14_BOVIN 35.4 127 82 0 36 416 2 128 3e-19 97.1 RL14_BOVIN reviewed 60S ribosomal protein L14 RPL14 Bos taurus (Bovine) 214 ribosomal large subunit biogenesis [GO:0042273]; translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625] cytosolic large ribosomal subunit [GO:0022625]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; ribosomal large subunit biogenesis [GO:0042273]; translation [GO:0006412] RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0003723; GO:0003735; GO:0006412; GO:0022625; GO:0042273
TRINITY_DN14_c0_g1_i12 0 41 0 260 sp Q7ZVR8 ESRP2_DANRE 32.9 328 188 10 53 1000 225 532 3.3e-34 147.9 ESRP2_DANRE reviewed Epithelial splicing regulatory protein 2 (RNA-binding motif protein 35B) (RNA-binding protein 35B) esrp2 rbm35b zgc:77254 Danio rerio (Zebrafish) (Brachydanio rerio) 736 mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; RNA splicing [GO:0008380] nucleoplasm [GO:0005654]; nucleus [GO:0005634] nucleoplasm [GO:0005654]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; RNA splicing [GO:0008380] mRNA binding [GO:0003729]; RNA binding [GO:0003723] GO:0003723; GO:0003729; GO:0005634; GO:0005654; GO:0006397; GO:0008380; GO:0043484
TRINITY_DN1726_c0_g2_i1 0 88 0 54 sp Q14590 ZN235_HUMAN 51.2 168 82 0 758 1261 461 628 4.1e-52 208.8 ZN235_HUMAN reviewed Zinc finger protein 235 (Zinc finger protein 270) (Zinc finger protein 93 homolog) (Zfp-93) (Zinc finger protein HZF6) ZNF235 ZFP93 ZNF270 Homo sapiens (Human) 738 regulation of transcription, DNA-templated [GO:0006355] nucleus [GO:0005634] nucleus [GO:0005634]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; regulation of transcription, DNA-templated [GO:0006355] DNA binding [GO:0003677]; metal ion binding [GO:0046872] GO:0003677; GO:0005634; GO:0006355; GO:0046872
TRINITY_DN4615_c1_g1_i1 0 26 0 111 sp Q9W422 JOSL_DROME 26.9 156 85 6 263 679 39 182 6.4e-07 58.2 JOSL_DROME reviewed Josephin-like protein (EC 3.4.19.12) CG3781 Drosophila melanogaster (Fruit fly) 221 protein deubiquitination [GO:0016579] thiol-dependent ubiquitin-specific protease activity [GO:0004843]; protein deubiquitination [GO:0016579] thiol-dependent ubiquitin-specific protease activity [GO:0004843] GO:0004843; GO:0016579
TRINITY_DN70_c0_g1_i13 553 144 572 128 sp P06800 PTPRC_MOUSE 28.2 607 376 17 1422 3080 620 1220 2e-59 233.4 PTPRC_MOUSE reviewed Receptor-type tyrosine-protein phosphatase C (EC 3.1.3.48) (Leukocyte common antigen) (L-CA) (Lymphocyte antigen 5) (Ly-5) (T200) (CD antigen CD45) Ptprc Ly-5 Mus musculus (Mouse) 1293 activation of MAPK activity [GO:0000187]; B cell differentiation [GO:0030183]; B cell proliferation [GO:0042100]; B cell receptor signaling pathway [GO:0050853]; bone marrow development [GO:0048539]; calcium-mediated signaling using intracellular calcium source [GO:0035584]; cell cycle phase transition [GO:0044770]; cellular response to extracellular stimulus [GO:0031668]; defense response to virus [GO:0051607]; dephosphorylation [GO:0016311]; hematopoietic progenitor cell differentiation [GO:0002244]; heterotypic cell-cell adhesion [GO:0034113]; immunoglobulin biosynthetic process [GO:0002378]; leukocyte cell-cell adhesion [GO:0007159]; natural killer cell differentiation [GO:0001779]; negative regulation of cell adhesion involved in substrate-bound cell migration [GO:0006933]; negative regulation of cytokine-mediated signaling pathway [GO:0001960]; negative regulation of ERK1 and ERK2 cascade [GO:0070373]; negative regulation of interleukin-2 biosynthetic process [GO:0045085]; negative regulation of peptidyl-tyrosine phosphorylation [GO:0050732]; negative regulation of protein autophosphorylation [GO:0031953]; negative regulation of protein kinase activity [GO:0006469]; negative regulation of protein tyrosine kinase activity [GO:0061099]; negative regulation of T cell mediated cytotoxicity [GO:0001915]; negative thymic T cell selection [GO:0045060]; plasma membrane raft distribution [GO:0044855]; positive regulation of alpha-beta T cell proliferation [GO:0046641]; positive regulation of antigen receptor-mediated signaling pathway [GO:0050857]; positive regulation of B cell proliferation [GO:0030890]; positive regulation of ERK1 and ERK2 cascade [GO:0070374]; positive regulation of extrinsic apoptotic signaling pathway [GO:2001238]; positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis [GO:1905451]; positive regulation of gamma-delta T cell differentiation [GO:0045588]; positive regulation of hematopoietic stem cell migration [GO:2000473]; positive regulation of humoral immune response mediated by circulating immunoglobulin [GO:0002925]; positive regulation of interleukin-2 biosynthetic process [GO:0045086]; positive regulation of isotype switching to IgG isotypes [GO:0048304]; positive regulation of MAPK cascade [GO:0043410]; positive regulation of peptidyl-tyrosine phosphorylation [GO:0050731]; positive regulation of protein tyrosine phosphatase activity [GO:1903615]; positive regulation of stem cell proliferation [GO:2000648]; positive regulation of T cell differentiation [GO:0045582]; positive regulation of T cell mediated cytotoxicity [GO:0001916]; positive regulation of T cell mediated immunity [GO:0002711]; positive regulation of T cell proliferation [GO:0042102]; positive regulation of tumor necrosis factor production [GO:0032760]; positive thymic T cell selection [GO:0045059]; protein dephosphorylation [GO:0006470]; regulation of cell cycle [GO:0051726]; regulation of extrinsic apoptotic signaling pathway [GO:2001236]; regulation of gene expression [GO:0010468]; regulation of humoral immune response mediated by circulating immunoglobulin [GO:0002923]; regulation of interleukin-8 production [GO:0032677]; regulation of phagocytosis [GO:0050764]; regulation of protein tyrosine kinase activity [GO:0061097]; regulation of receptor signaling pathway via JAK-STAT [GO:0046425]; release of sequestered calcium ion into cytosol [GO:0051209]; response to gamma radiation [GO:0010332]; stem cell development [GO:0048864]; T cell differentiation [GO:0030217]; T cell proliferation [GO:0042098]; T cell receptor signaling pathway [GO:0050852] bleb [GO:0032059]; cell periphery [GO:0071944]; cell surface [GO:0009986]; cytoplasmic side of plasma membrane [GO:0009898]; external side of plasma membrane [GO:0009897]; focal adhesion [GO:0005925]; integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; membrane microdomain [GO:0098857]; membrane raft [GO:0045121]; plasma membrane [GO:0005886] bleb [GO:0032059]; cell periphery [GO:0071944]; cell surface [GO:0009986]; cytoplasmic side of plasma membrane [GO:0009898]; external side of plasma membrane [GO:0009897]; focal adhesion [GO:0005925]; integral component of membrane [GO:0016021]; integral component of plasma membrane [GO:0005887]; membrane microdomain [GO:0098857]; membrane raft [GO:0045121]; plasma membrane [GO:0005886]; ankyrin binding [GO:0030506]; heparan sulfate proteoglycan binding [GO:0043395]; heparin binding [GO:0008201]; protein kinase binding [GO:0019901]; protein tyrosine phosphatase activity [GO:0004725]; signaling receptor binding [GO:0005102]; spectrin binding [GO:0030507]; activation of MAPK activity [GO:0000187]; B cell differentiation [GO:0030183]; B cell proliferation [GO:0042100]; B cell receptor signaling pathway [GO:0050853]; bone marrow development [GO:0048539]; calcium-mediated signaling using intracellular calcium source [GO:0035584]; cell cycle phase transition [GO:0044770]; cellular response to extracellular stimulus [GO:0031668]; defense response to virus [GO:0051607]; dephosphorylation [GO:0016311]; hematopoietic progenitor cell differentiation [GO:0002244]; heterotypic cell-cell adhesion [GO:0034113]; immunoglobulin biosynthetic process [GO:0002378]; leukocyte cell-cell adhesion [GO:0007159]; natural killer cell differentiation [GO:0001779]; negative regulation of cell adhesion involved in substrate-bound cell migration [GO:0006933]; negative regulation of cytokine-mediated signaling pathway [GO:0001960]; negative regulation of ERK1 and ERK2 cascade [GO:0070373]; negative regulation of interleukin-2 biosynthetic process [GO:0045085]; negative regulation of peptidyl-tyrosine phosphorylation [GO:0050732]; negative regulation of protein autophosphorylation [GO:0031953]; negative regulation of protein kinase activity [GO:0006469]; negative regulation of protein tyrosine kinase activity [GO:0061099]; negative regulation of T cell mediated cytotoxicity [GO:0001915]; negative thymic T cell selection [GO:0045060]; plasma membrane raft distribution [GO:0044855]; positive regulation of alpha-beta T cell proliferation [GO:0046641]; positive regulation of antigen receptor-mediated signaling pathway [GO:0050857]; positive regulation of B cell proliferation [GO:0030890]; positive regulation of ERK1 and ERK2 cascade [GO:0070374]; positive regulation of extrinsic apoptotic signaling pathway [GO:2001238]; positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis [GO:1905451]; positive regulation of gamma-delta T cell differentiation [GO:0045588]; positive regulation of hematopoietic stem cell migration [GO:2000473]; positive regulation of humoral immune response mediated by circulating immunoglobulin [GO:0002925]; positive regulation of interleukin-2 biosynthetic process [GO:0045086]; positive regulation of isotype switching to IgG isotypes [GO:0048304]; positive regulation of MAPK cascade [GO:0043410]; positive regulation of peptidyl-tyrosine phosphorylation [GO:0050731]; positive regulation of protein tyrosine phosphatase activity [GO:1903615]; positive regulation of stem cell proliferation [GO:2000648]; positive regulation of T cell differentiation [GO:0045582]; positive regulation of T cell mediated cytotoxicity [GO:0001916]; positive regulation of T cell mediated immunity [GO:0002711]; positive regulation of T cell proliferation [GO:0042102]; positive regulation of tumor necrosis factor production [GO:0032760]; positive thymic T cell selection [GO:0045059]; protein dephosphorylation [GO:0006470]; regulation of cell cycle [GO:0051726]; regulation of extrinsic apoptotic signaling pathway [GO:2001236]; regulation of gene expression [GO:0010468]; regulation of humoral immune response mediated by circulating immunoglobulin [GO:0002923]; regulation of interleukin-8 production [GO:0032677]; regulation of phagocytosis [GO:0050764]; regulation of protein tyrosine kinase activity [GO:0061097]; regulation of receptor signaling pathway via JAK-STAT [GO:0046425]; release of sequestered calcium ion into cytosol [GO:0051209]; response to gamma radiation [GO:0010332]; stem cell development [GO:0048864]; T cell differentiation [GO:0030217]; T cell proliferation [GO:0042098]; T cell receptor signaling pathway [GO:0050852] ankyrin binding [GO:0030506]; heparan sulfate proteoglycan binding [GO:0043395]; heparin binding [GO:0008201]; protein kinase binding [GO:0019901]; protein tyrosine phosphatase activity [GO:0004725]; signaling receptor binding [GO:0005102]; spectrin binding [GO:0030507] GO:0000187; GO:0001779; GO:0001915; GO:0001916; GO:0001960; GO:0002244; GO:0002378; GO:0002711; GO:0002923; GO:0002925; GO:0004725; GO:0005102; GO:0005886; GO:0005887; GO:0005925; GO:0006469; GO:0006470; GO:0006933; GO:0007159; GO:0008201; GO:0009897; GO:0009898; GO:0009986; GO:0010332; GO:0010468; GO:0016021; GO:0016311; GO:0019901; GO:0030183; GO:0030217; GO:0030506; GO:0030507; GO:0030890; GO:0031668; GO:0031953; GO:0032059; GO:0032677; GO:0032760; GO:0034113; GO:0035584; GO:0042098; GO:0042100; GO:0042102; GO:0043395; GO:0043410; GO:0044770; GO:0044855; GO:0045059; GO:0045060; GO:0045085; GO:0045086; GO:0045121; GO:0045582; GO:0045588; GO:0046425; GO:0046641; GO:0048304; GO:0048539; GO:0048864; GO:0050731; GO:0050732; GO:0050764; GO:0050852; GO:0050853; GO:0050857; GO:0051209; GO:0051607; GO:0051726; GO:0061097; GO:0061099; GO:0070373; GO:0070374; GO:0071944; GO:0098857; GO:1903615; GO:1905451; GO:2000473; GO:2000648; GO:2001236; GO:2001238
TRINITY_DN16442_c0_g1_i11 0 153 0 51 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN10840_c0_g1_i2 134 0 218 0 sp Q9Y2B0 CNPY2_HUMAN 32.5 169 110 1 378 884 7 171 6.7e-23 109.8 CNPY2_HUMAN reviewed Protein canopy homolog 2 (MIR-interacting saposin-like protein) (Putative secreted protein Zsig9) (Transmembrane protein 4) CNPY2 MSAP TMEM4 ZSIG9 UNQ1943/PRO4426 Homo sapiens (Human) 182 negative regulation of gene expression [GO:0010629]; positive regulation of low-density lipoprotein particle receptor biosynthetic process [GO:0045716]; regulation of low-density lipoprotein particle clearance [GO:0010988] endoplasmic reticulum [GO:0005783] endoplasmic reticulum [GO:0005783]; negative regulation of gene expression [GO:0010629]; positive regulation of low-density lipoprotein particle receptor biosynthetic process [GO:0045716]; regulation of low-density lipoprotein particle clearance [GO:0010988] GO:0005783; GO:0010629; GO:0010988; GO:0045716
TRINITY_DN644_c0_g1_i1 0 53 0 162 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN4979_c0_g1_i1 0 27 0 103 sp Q8VYP6 NOL9_ARATH 28.4 296 180 10 416 1246 15 297 1.7e-18 95.9 NOL9_ARATH reviewed Polynucleotide 5'-hydroxyl-kinase NOL9 (EC 2.7.1.-) (Nucleolar protein 9 homolog) At5g11010 T30N20.280 Arabidopsis thaliana (Mouse-ear cress) 368 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000448]; RNA processing [GO:0006396]; rRNA processing [GO:0006364] nucleolus [GO:0005730]; nucleus [GO:0005634] nucleolus [GO:0005730]; nucleus [GO:0005634]; ATP binding [GO:0005524]; polynucleotide 5'-hydroxyl-kinase activity [GO:0051731]; cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000448]; RNA processing [GO:0006396]; rRNA processing [GO:0006364] ATP binding [GO:0005524]; polynucleotide 5'-hydroxyl-kinase activity [GO:0051731] GO:0000448; GO:0005524; GO:0005634; GO:0005730; GO:0006364; GO:0006396; GO:0051731
TRINITY_DN7420_c0_g1_i11 98 0 98 0 sp Q92982 NINJ1_HUMAN 45.1 113 56 2 403 738 35 142 1.7e-17 92 NINJ1_HUMAN reviewed Ninjurin-1 (Nerve injury-induced protein 1) NINJ1 Homo sapiens (Human) 152 cell adhesion [GO:0007155]; hyaloid vascular plexus regression [GO:1990384]; nervous system development [GO:0007399]; positive regulation of cell-matrix adhesion [GO:0001954]; tissue regeneration [GO:0042246] integral component of membrane [GO:0016021] integral component of membrane [GO:0016021]; cell adhesion [GO:0007155]; hyaloid vascular plexus regression [GO:1990384]; nervous system development [GO:0007399]; positive regulation of cell-matrix adhesion [GO:0001954]; tissue regeneration [GO:0042246] GO:0001954; GO:0007155; GO:0007399; GO:0016021; GO:0042246; GO:1990384
TRINITY_DN4232_c0_g1_i18 0 95 0 136 sp P0DJ52 RL8_TETTS 72.4 156 43 0 2 469 99 254 2.3e-62 240 RL8_TETTS reviewed 60S ribosomal protein L8 RPL8 RPL2 TTHERM_00716240 Tetrahymena thermophila (strain SB210) 264 translation [GO:0006412] cytoplasm [GO:0005737]; ribosome [GO:0005840] cytoplasm [GO:0005737]; ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735] GO:0003735; GO:0005737; GO:0005840; GO:0006412; GO:0019843
TRINITY_DN14262_c0_g1_i1 0 35 0 93 sp Q3T1L0 A16A1_RAT 42.9 802 432 13 90 2465 17 802 4.1e-164 580.1 A16A1_RAT reviewed Aldehyde dehydrogenase family 16 member A1 Aldh16a1 Rattus norvegicus (Rat) 802 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [GO:0016620] oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [GO:0016620] GO:0016620
TRINITY_DN4988_c0_g1_i14 0 131 0 39 sp Q96N67 DOCK7_HUMAN 51.7 2155 902 38 23 6217 4 2109 0 2005.3 DOCK7_HUMAN reviewed Dedicator of cytokinesis protein 7 DOCK7 KIAA1771 Homo sapiens (Human) 2140 activation of GTPase activity [GO:0090630]; axonogenesis [GO:0007409]; establishment of neuroblast polarity [GO:0045200]; interkinetic nuclear migration [GO:0022027]; microtubule cytoskeleton organization [GO:0000226]; negative regulation of cold-induced thermogenesis [GO:0120163]; neuron projection development [GO:0031175]; positive regulation of peptidyl-serine phosphorylation [GO:0033138]; positive regulation of vascular associated smooth muscle cell migration [GO:1904754]; regulation of neurogenesis [GO:0050767]; small GTPase mediated signal transduction [GO:0007264] axon [GO:0030424]; basal part of cell [GO:0045178]; focal adhesion [GO:0005925]; growth cone [GO:0030426]; neuron projection [GO:0043005] axon [GO:0030424]; basal part of cell [GO:0045178]; focal adhesion [GO:0005925]; growth cone [GO:0030426]; neuron projection [GO:0043005]; guanyl-nucleotide exchange factor activity [GO:0005085]; Rac GTPase binding [GO:0048365]; activation of GTPase activity [GO:0090630]; axonogenesis [GO:0007409]; establishment of neuroblast polarity [GO:0045200]; interkinetic nuclear migration [GO:0022027]; microtubule cytoskeleton organization [GO:0000226]; negative regulation of cold-induced thermogenesis [GO:0120163]; neuron projection development [GO:0031175]; positive regulation of peptidyl-serine phosphorylation [GO:0033138]; positive regulation of vascular associated smooth muscle cell migration [GO:1904754]; regulation of neurogenesis [GO:0050767]; small GTPase mediated signal transduction [GO:0007264] guanyl-nucleotide exchange factor activity [GO:0005085]; Rac GTPase binding [GO:0048365] GO:0000226; GO:0005085; GO:0005925; GO:0007264; GO:0007409; GO:0022027; GO:0030424; GO:0030426; GO:0031175; GO:0033138; GO:0043005; GO:0045178; GO:0045200; GO:0048365; GO:0050767; GO:0090630; GO:0120163; GO:1904754
TRINITY_DN1901_c0_g1_i22 0 43 0 84 sp Q71G51 TBA_NEOCA 91.6 453 38 0 151 1509 1 453 2.2e-250 865.9 TBA_NEOCA reviewed Tubulin alpha chain (Alpha-tubulin) TUBA Neospora caninum (Coccidian parasite) 453 microtubule-based process [GO:0007017] cytoplasm [GO:0005737]; microtubule [GO:0005874] cytoplasm [GO:0005737]; microtubule [GO:0005874]; GTP binding [GO:0005525]; GTPase activity [GO:0003924]; structural constituent of cytoskeleton [GO:0005200]; microtubule-based process [GO:0007017] GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200] GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017
TRINITY_DN116289_c0_g1_i1 0 92 0 127 sp Q98TF5 RL39_CHICK 77.6 49 11 0 41 187 1 49 4.2e-15 82 RL39_CHICK reviewed 60S ribosomal protein L39 RPL39 Gallus gallus (Chicken) 51 translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625] cytosolic large ribosomal subunit [GO:0022625]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0006412; GO:0022625
TRINITY_DN8440_c0_g1_i1 0 54 0 190 sp Q9SHG6 STIP1_ARATH 31.2 202 122 5 365 955 192 381 1.2e-12 76.6 STIP1_ARATH reviewed Septin and tuftelin-interacting protein 1 homolog 1 (Nineteen complex-related protein 1 homolog) (AtNTR1) (Protein SPLICEOSOMAL TIMEKEEPER LOCUS 1) STIPL1 NTR1 At1g17070 F20D23.23 Arabidopsis thaliana (Mouse-ear cress) 849 mRNA splicing, via spliceosome [GO:0000398]; regulation of circadian rhythm [GO:0042752]; spliceosomal complex disassembly [GO:0000390] nuclear lumen [GO:0031981]; U2-type post-mRNA release spliceosomal complex [GO:0071008] nuclear lumen [GO:0031981]; U2-type post-mRNA release spliceosomal complex [GO:0071008]; DNA binding [GO:0003677]; U1 snRNP binding [GO:1990446]; mRNA splicing, via spliceosome [GO:0000398]; regulation of circadian rhythm [GO:0042752]; spliceosomal complex disassembly [GO:0000390] DNA binding [GO:0003677]; U1 snRNP binding [GO:1990446] GO:0000390; GO:0000398; GO:0003677; GO:0031981; GO:0042752; GO:0071008; GO:1990446
TRINITY_DN2601_c0_g1_i1 0 40 0 120 sp Q9H2K2 TNKS2_HUMAN 39 123 73 2 71 436 59 180 4.9e-12 74.7 TNKS2_HUMAN reviewed Poly [ADP-ribose] polymerase tankyrase-2 (EC 2.4.2.30) (ADP-ribosyltransferase diphtheria toxin-like 6) (ARTD6) (Poly [ADP-ribose] polymerase 5B) (Protein poly-ADP-ribosyltransferase tankyrase-2) (EC 2.4.2.-) (TNKS-2) (TRF1-interacting ankyrin-related ADP-ribose polymerase 2) (Tankyrase II) (Tankyrase-2) (TANK2) (Tankyrase-like protein) (Tankyrase-related protein) TNKS2 PARP5B TANK2 TNKL Homo sapiens (Human) 1166 multicellular organism growth [GO:0035264]; negative regulation of telomere maintenance via telomere lengthening [GO:1904357]; positive regulation of canonical Wnt signaling pathway [GO:0090263]; positive regulation of telomere capping [GO:1904355]; positive regulation of telomere maintenance via telomerase [GO:0032212]; protein ADP-ribosylation [GO:0006471]; protein auto-ADP-ribosylation [GO:0070213]; protein localization to chromosome, telomeric region [GO:0070198]; protein poly-ADP-ribosylation [GO:0070212]; protein polyubiquitination [GO:0000209]; regulation of multicellular organism growth [GO:0040014]; Wnt signaling pathway [GO:0016055] cytoplasm [GO:0005737]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; nuclear chromosome, telomeric region [GO:0000784]; nuclear envelope [GO:0005635]; nucleus [GO:0005634]; pericentriolar material [GO:0000242]; perinuclear region of cytoplasm [GO:0048471] cytoplasm [GO:0005737]; cytosol [GO:0005829]; Golgi membrane [GO:0000139]; nuclear chromosome, telomeric region [GO:0000784]; nuclear envelope [GO:0005635]; nucleus [GO:0005634]; pericentriolar material [GO:0000242]; perinuclear region of cytoplasm [GO:0048471]; enzyme binding [GO:0019899]; metal ion binding [GO:0046872]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; protein ADP-ribosylase activity [GO:1990404]; multicellular organism growth [GO:0035264]; negative regulation of telomere maintenance via telomere lengthening [GO:1904357]; positive regulation of canonical Wnt signaling pathway [GO:0090263]; positive regulation of telomere capping [GO:1904355]; positive regulation of telomere maintenance via telomerase [GO:0032212]; protein ADP-ribosylation [GO:0006471]; protein auto-ADP-ribosylation [GO:0070213]; protein localization to chromosome, telomeric region [GO:0070198]; protein poly-ADP-ribosylation [GO:0070212]; protein polyubiquitination [GO:0000209]; regulation of multicellular organism growth [GO:0040014]; Wnt signaling pathway [GO:0016055] enzyme binding [GO:0019899]; metal ion binding [GO:0046872]; NAD+ ADP-ribosyltransferase activity [GO:0003950]; protein ADP-ribosylase activity [GO:1990404] GO:0000139; GO:0000209; GO:0000242; GO:0000784; GO:0003950; GO:0005634; GO:0005635; GO:0005737; GO:0005829; GO:0006471; GO:0016055; GO:0019899; GO:0032212; GO:0035264; GO:0040014; GO:0046872; GO:0048471; GO:0070198; GO:0070212; GO:0070213; GO:0090263; GO:1904355; GO:1904357; GO:1990404
TRINITY_DN1070_c0_g1_i3 0 78 0 62 sp O19110 TSPY1_BOVIN 27.2 213 139 9 60 677 107 310 8.1e-06 53.1 TSPY1_BOVIN reviewed Testis-specific Y-encoded protein 1 (bTSPY) TSPY1 TSPY Bos taurus (Bovine) 317 cell differentiation [GO:0030154]; gonadal mesoderm development [GO:0007506]; nucleosome assembly [GO:0006334]; spermatogenesis [GO:0007283] cytoplasm [GO:0005737]; nucleus [GO:0005634] cytoplasm [GO:0005737]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; cell differentiation [GO:0030154]; gonadal mesoderm development [GO:0007506]; nucleosome assembly [GO:0006334]; spermatogenesis [GO:0007283] chromatin binding [GO:0003682]; histone binding [GO:0042393] GO:0003682; GO:0005634; GO:0005737; GO:0006334; GO:0007283; GO:0007506; GO:0030154; GO:0042393
TRINITY_DN9157_c1_g1_i1 0 83 0 132 sp Q8IVL1 NAV2_HUMAN 47.9 900 366 23 5323 7950 1668 2488 1.8e-194 682.9 NAV2_HUMAN reviewed Neuron navigator 2 (EC 3.6.4.12) (Helicase APC down-regulated 1) (Pore membrane and/or filament-interacting-like protein 2) (Retinoic acid inducible in neuroblastoma 1) (Steerin-2) (Unc-53 homolog 2) (unc53H2) NAV2 HELAD1 KIAA1419 POMFIL2 RAINB1 STEERIN2 Homo sapiens (Human) 2488 glossopharyngeal nerve development [GO:0021563]; locomotory behavior [GO:0007626]; nervous system development [GO:0007399]; neurogenesis [GO:0022008]; optic nerve development [GO:0021554]; regulation of systemic arterial blood pressure by baroreceptor feedback [GO:0003025]; sensory perception of smell [GO:0007608]; sensory perception of sound [GO:0007605]; vagus nerve development [GO:0021564] interstitial matrix [GO:0005614]; nucleoplasm [GO:0005654] interstitial matrix [GO:0005614]; nucleoplasm [GO:0005654]; ATP binding [GO:0005524]; DNA helicase activity [GO:0003678]; heparin binding [GO:0008201]; glossopharyngeal nerve development [GO:0021563]; locomotory behavior [GO:0007626]; nervous system development [GO:0007399]; neurogenesis [GO:0022008]; optic nerve development [GO:0021554]; regulation of systemic arterial blood pressure by baroreceptor feedback [GO:0003025]; sensory perception of smell [GO:0007608]; sensory perception of sound [GO:0007605]; vagus nerve development [GO:0021564] ATP binding [GO:0005524]; DNA helicase activity [GO:0003678]; heparin binding [GO:0008201] GO:0003025; GO:0003678; GO:0005524; GO:0005614; GO:0005654; GO:0007399; GO:0007605; GO:0007608; GO:0007626; GO:0008201; GO:0021554; GO:0021563; GO:0021564; GO:0022008
TRINITY_DN5291_c0_g1_i1 0 81 0 105 sp Q24154 RL29_DROME 47.7 65 34 0 51 245 1 65 2.7e-07 57 RL29_DROME reviewed 60S ribosomal protein L29 (L43) RpL29 RpL43 CG10071 Drosophila melanogaster (Fruit fly) 76 cytoplasmic translation [GO:0002181] cytosolic large ribosomal subunit [GO:0022625] cytosolic large ribosomal subunit [GO:0022625]; chromatin binding [GO:0003682]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181] chromatin binding [GO:0003682]; structural constituent of ribosome [GO:0003735] GO:0002181; GO:0003682; GO:0003735; GO:0022625
TRINITY_DN11222_c0_g1_i1 0 38 0 120 sp Q9C9C6 RL62_ARATH 53.3 150 65 2 144 578 84 233 9.1e-35 148.7 RL62_ARATH reviewed 60S ribosomal protein L6-2 RPL6B At1g74060 F2P9.7 Arabidopsis thaliana (Mouse-ear cress) 233 cytoplasmic translation [GO:0002181]; ribosomal large subunit assembly [GO:0000027] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; mitochondrion [GO:0005739]; nucleolus [GO:0005730] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; cytoplasmic translation [GO:0002181]; ribosomal large subunit assembly [GO:0000027] mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0000027; GO:0002181; GO:0003723; GO:0003729; GO:0003735; GO:0005730; GO:0005739; GO:0022625; GO:0022626
TRINITY_DN2688_c0_g1_i6 0 59 0 88 sp Q8SQA4 CD97_BOVIN 27.7 213 146 5 4 639 527 732 4.2e-09 65.1 AGRE5_BOVIN reviewed Adhesion G protein-coupled receptor E5 (Leukocyte antigen CD97) (CD antigen CD97) [Cleaved into: Adhesion G protein-coupled receptor E5 subunit alpha; Adhesion G protein-coupled receptor E5 subunit beta] ADGRE5 CD97 Bos taurus (Bovine) 734 adenylate cyclase-activating G protein-coupled receptor signaling pathway [GO:0007189]; cell adhesion [GO:0007155]; cell surface receptor signaling pathway [GO:0007166] extracellular space [GO:0005615]; integral component of plasma membrane [GO:0005887] extracellular space [GO:0005615]; integral component of plasma membrane [GO:0005887]; calcium ion binding [GO:0005509]; G protein-coupled receptor activity [GO:0004930]; adenylate cyclase-activating G protein-coupled receptor signaling pathway [GO:0007189]; cell adhesion [GO:0007155]; cell surface receptor signaling pathway [GO:0007166] calcium ion binding [GO:0005509]; G protein-coupled receptor activity [GO:0004930] GO:0004930; GO:0005509; GO:0005615; GO:0005887; GO:0007155; GO:0007166; GO:0007189
TRINITY_DN10564_c0_g1_i1 0 37 0 85 sp O61585 KTNB1_STRPU 42 174 99 1 460 981 519 690 9.3e-34 147.1 KTNB1_STRPU reviewed Katanin p80 WD40 repeat-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin) KATNB1 Strongylocentrotus purpuratus (Purple sea urchin) 690 cell cycle [GO:0007049]; cell division [GO:0051301]; microtubule depolymerization [GO:0007019]; microtubule severing [GO:0051013] centrosome [GO:0005813]; cytoplasm [GO:0005737]; katanin complex [GO:0008352]; microtubule [GO:0005874]; spindle [GO:0005819]; spindle pole [GO:0000922] centrosome [GO:0005813]; cytoplasm [GO:0005737]; katanin complex [GO:0008352]; microtubule [GO:0005874]; spindle [GO:0005819]; spindle pole [GO:0000922]; microtubule binding [GO:0008017]; cell cycle [GO:0007049]; cell division [GO:0051301]; microtubule depolymerization [GO:0007019]; microtubule severing [GO:0051013] microtubule binding [GO:0008017] GO:0000922; GO:0005737; GO:0005813; GO:0005819; GO:0005874; GO:0007019; GO:0007049; GO:0008017; GO:0008352; GO:0051013; GO:0051301
TRINITY_DN862_c0_g1_i6 0 40 0 81 sp A7EJY3 DED1_SCLS1 51.6 417 187 4 131 1345 166 579 4.3e-109 397.1 DED1_SCLS1 reviewed ATP-dependent RNA helicase ded1 (EC 3.6.4.13) ded1 SS1G_05629 Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold) (Whetzelinia sclerotiorum) 678 cytoplasm [GO:0005737]; nucleus [GO:0005634] cytoplasm [GO:0005737]; nucleus [GO:0005634]; ATP binding [GO:0005524]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; translation initiation factor activity [GO:0003743] ATP binding [GO:0005524]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724]; translation initiation factor activity [GO:0003743] GO:0003723; GO:0003724; GO:0003743; GO:0005524; GO:0005634; GO:0005737
TRINITY_DN25474_c0_g1_i3 1 75 0 73 sp O15297 PPM1D_HUMAN 51.2 291 126 4 914 1774 99 377 9.8e-77 290.4 PPM1D_HUMAN reviewed Protein phosphatase 1D (EC 3.1.3.16) (Protein phosphatase 2C isoform delta) (PP2C-delta) (Protein phosphatase magnesium-dependent 1 delta) (p53-induced protein phosphatase 1) PPM1D WIP1 Homo sapiens (Human) 605 cellular response to starvation [GO:0009267]; chromatin silencing [GO:0006342]; DNA damage response, signal transduction by p53 class mediator [GO:0030330]; DNA methylation [GO:0006306]; G2/M transition of mitotic cell cycle [GO:0000086]; negative regulation of cell population proliferation [GO:0008285]; negative regulation of gene expression, epigenetic [GO:0045814]; peptidyl-threonine dephosphorylation [GO:0035970]; protein dephosphorylation [GO:0006470]; response to bacterium [GO:0009617]; response to radiation [GO:0009314]; transcription initiation from RNA polymerase II promoter [GO:0006367] cytosol [GO:0005829]; nucleoplasm [GO:0005654]; nucleus [GO:0005634] cytosol [GO:0005829]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; magnesium-dependent protein serine/threonine phosphatase activity [GO:0004724]; metal ion binding [GO:0046872]; mitogen-activated protein kinase binding [GO:0051019]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine phosphatase activity [GO:0004722]; cellular response to starvation [GO:0009267]; chromatin silencing [GO:0006342]; DNA damage response, signal transduction by p53 class mediator [GO:0030330]; DNA methylation [GO:0006306]; G2/M transition of mitotic cell cycle [GO:0000086]; negative regulation of cell population proliferation [GO:0008285]; negative regulation of gene expression, epigenetic [GO:0045814]; peptidyl-threonine dephosphorylation [GO:0035970]; protein dephosphorylation [GO:0006470]; response to bacterium [GO:0009617]; response to radiation [GO:0009314]; transcription initiation from RNA polymerase II promoter [GO:0006367] magnesium-dependent protein serine/threonine phosphatase activity [GO:0004724]; metal ion binding [GO:0046872]; mitogen-activated protein kinase binding [GO:0051019]; protein serine/threonine kinase activity [GO:0004674]; protein serine/threonine phosphatase activity [GO:0004722] GO:0000086; GO:0004674; GO:0004722; GO:0004724; GO:0005634; GO:0005654; GO:0005829; GO:0006306; GO:0006342; GO:0006367; GO:0006470; GO:0008285; GO:0009267; GO:0009314; GO:0009617; GO:0030330; GO:0035970; GO:0045814; GO:0046872; GO:0051019
TRINITY_DN2557_c0_g1_i7 0 44 0 149 sp Q8WVB6 CTF18_HUMAN 29.3 379 206 11 511 1509 246 608 2.9e-23 112.5 CTF18_HUMAN reviewed Chromosome transmission fidelity protein 18 homolog (hCTF18) (CHL12) CHTF18 C16orf41 CTF18 Homo sapiens (Human) 975 cell cycle [GO:0007049]; DNA duplex unwinding [GO:0032508]; DNA replication [GO:0006260]; positive regulation of DNA-directed DNA polymerase activity [GO:1900264] Ctf18 RFC-like complex [GO:0031390]; cytosol [GO:0005829]; membrane [GO:0016020]; nucleoplasm [GO:0005654]; nucleus [GO:0005634] Ctf18 RFC-like complex [GO:0031390]; cytosol [GO:0005829]; membrane [GO:0016020]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; cell cycle [GO:0007049]; DNA duplex unwinding [GO:0032508]; DNA replication [GO:0006260]; positive regulation of DNA-directed DNA polymerase activity [GO:1900264] ATP binding [GO:0005524]; DNA binding [GO:0003677] GO:0003677; GO:0005524; GO:0005634; GO:0005654; GO:0005829; GO:0006260; GO:0007049; GO:0016020; GO:0031390; GO:0032508; GO:1900264
TRINITY_DN726_c0_g1_i3 0 108 0 205 sp P18445 RL27A_RAT 61.5 148 56 1 39 479 1 148 3.4e-47 189.5 RL27A_RAT reviewed 60S ribosomal protein L27a Rpl27a Rattus norvegicus (Rat) 148 translation [GO:0006412] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626] cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0003735; GO:0006412; GO:0022625; GO:0022626
TRINITY_DN1545_c0_g1_i24 0 53 0 109 sp P53470 ACT1_SCHMA 89.5 304 32 0 71 982 1 304 2.3e-160 566.2 ACT1_SCHMA reviewed Actin-1 Schistosoma mansoni (Blood fluke) 376 cytoplasm [GO:0005737]; cytoskeleton [GO:0005856] cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; ATP binding [GO:0005524] ATP binding [GO:0005524] GO:0005524; GO:0005737; GO:0005856
TRINITY_DN4435_c0_g1_i7 0 278 30 135 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN2195_c1_g1_i1 0 60 0 57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN2756_c0_g1_i4 0 79 0 183 sp Q6ICX4 PTBP3_ARATH 30.6 180 109 6 581 1114 35 200 1.2e-10 69.3 PTBP3_ARATH reviewed Polypyrimidine tract-binding protein homolog 3 At1g43190 F1I21.14 Arabidopsis thaliana (Mouse-ear cress) 432 mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380] cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932] cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932]; mRNA binding [GO:0003729]; mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380] mRNA binding [GO:0003729] GO:0000932; GO:0003729; GO:0005634; GO:0005737; GO:0006397; GO:0006417; GO:0008380; GO:0043484
TRINITY_DN10685_c0_g2_i1 0 109 0 212 sp P42791 RL182_ARATH 61.7 193 68 1 54 632 1 187 4.5e-56 219.5 RL182_ARATH reviewed 60S ribosomal protein L18-2 RPL18B At3g05590 F18C1.14 Arabidopsis thaliana (Mouse-ear cress) 187 translation [GO:0006412] chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; large ribosomal subunit [GO:0015934]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773] chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; large ribosomal subunit [GO:0015934]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412] RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] GO:0003723; GO:0003735; GO:0005773; GO:0005774; GO:0005829; GO:0005886; GO:0006412; GO:0009507; GO:0015934; GO:0022625
TRINITY_DN9764_c0_g1_i17 0 35 0 97 sp Q9C587 RFC1_ARATH 31.2 725 425 21 37 2085 191 883 1.9e-73 278.9 RFC1_ARATH reviewed Replication factor C subunit 1 (AtRFC1) (Activator 1 large subunit) (Activator 1 subunit 1) RFC1 At5g22010 T6G21 Arabidopsis thaliana (Mouse-ear cress) 956 cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; meiotic cell cycle [GO:0051321]; regulation of chromatin silencing [GO:0031935]; regulation of histone H3-K9 methylation [GO:0051570]; reproduction [GO:0000003]; resolution of meiotic recombination intermediates [GO:0000712]; response to abscisic acid [GO:0009737] DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634] DNA replication factor C complex [GO:0005663]; nucleus [GO:0005634]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA clamp loader activity [GO:0003689]; cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281]; DNA replication [GO:0006260]; meiotic cell cycle [GO:0051321]; regulation of chromatin silencing [GO:0031935]; regulation of histone H3-K9 methylation [GO:0051570]; reproduction [GO:0000003]; resolution of meiotic recombination intermediates [GO:0000712]; response to abscisic acid [GO:0009737] ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA clamp loader activity [GO:0003689] GO:0000003; GO:0000712; GO:0003677; GO:0003689; GO:0005524; GO:0005634; GO:0005663; GO:0006260; GO:0006281; GO:0006974; GO:0009737; GO:0031935; GO:0051321; GO:0051570
TRINITY_DN14_c0_g1_i16 0 53 0 87 sp Q7ZVR8 ESRP2_DANRE 32.9 328 188 10 53 1000 225 532 3.8e-34 147.9 ESRP2_DANRE reviewed Epithelial splicing regulatory protein 2 (RNA-binding motif protein 35B) (RNA-binding protein 35B) esrp2 rbm35b zgc:77254 Danio rerio (Zebrafish) (Brachydanio rerio) 736 mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; RNA splicing [GO:0008380] nucleoplasm [GO:0005654]; nucleus [GO:0005634] nucleoplasm [GO:0005654]; nucleus [GO:0005634]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; mRNA processing [GO:0006397]; regulation of RNA splicing [GO:0043484]; RNA splicing [GO:0008380] mRNA binding [GO:0003729]; RNA binding [GO:0003723] GO:0003723; GO:0003729; GO:0005634; GO:0005654; GO:0006397; GO:0008380; GO:0043484
TRINITY_DN647_c0_g1_i9 0 39 0 240 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN3819_c1_g1_i24 113 0 95 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN23911_c0_g1_i1 0 54 0 86 sp Q67XX3 FB252_ARATH 32.6 457 270 12 31 1347 60 496 4.1e-60 233.8 FB252_ARATH reviewed F-box protein At5g06550 At5g06550 F15M7.8 Arabidopsis thaliana (Mouse-ear cress) 502 histone H4-R3 methylation [GO:0043985]; positive regulation of seed germination [GO:0010030] nucleus [GO:0005634] nucleus [GO:0005634]; cis-regulatory region sequence-specific DNA binding [GO:0000987]; histone H4-R3 methylation [GO:0043985]; positive regulation of seed germination [GO:0010030] cis-regulatory region sequence-specific DNA binding [GO:0000987] GO:0000987; GO:0005634; GO:0010030; GO:0043985
TRINITY_DN30373_c0_g1_i1 0 34 0 103 sp Q9Y4C8 RBM19_HUMAN 34 567 298 12 752 2305 401 940 2.9e-80 301.6 RBM19_HUMAN reviewed Probable RNA-binding protein 19 (RNA-binding motif protein 19) RBM19 KIAA0682 Homo sapiens (Human) 960 mRNA cis splicing, via spliceosome [GO:0045292]; multicellular organism development [GO:0007275]; positive regulation of embryonic development [GO:0040019]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381] chromosome [GO:0005694]; cytoplasm [GO:0005737]; membrane [GO:0016020]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634] chromosome [GO:0005694]; cytoplasm [GO:0005737]; membrane [GO:0016020]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; RNA binding [GO:0003723]; mRNA cis splicing, via spliceosome [GO:0045292]; multicellular organism development [GO:0007275]; positive regulation of embryonic development [GO:0040019]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381] RNA binding [GO:0003723] GO:0000381; GO:0003723; GO:0005634; GO:0005654; GO:0005694; GO:0005730; GO:0005737; GO:0007275; GO:0016020; GO:0016607; GO:0040019; GO:0045292
TRINITY_DN2394_c1_g1_i7 0 35 0 199 sp Q8LC68 NRP2_ARATH 23.9 222 147 5 52 663 9 226 7.1e-18 93.2 NRP2_ARATH reviewed NAP1-related protein 2 (Nucleosome/chromatin assembly factor group A5) (Protein SET homolog 2) NRP2 NFA5 At1g18800 F6A14.10 Arabidopsis thaliana (Mouse-ear cress) 255 double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634] cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; chromatin binding [GO:0003682]; histone binding [GO:0042393]; double-strand break repair via homologous recombination [GO:0000724]; nucleosome assembly [GO:0006334]; somatic cell DNA recombination [GO:0016444] chromatin binding [GO:0003682]; histone binding [GO:0042393] GO:0000724; GO:0003682; GO:0005634; GO:0005737; GO:0005829; GO:0006334; GO:0016444; GO:0042393
TRINITY_DN525_c0_g2_i13 0 67 5 113 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
TRINITY_DN1745_c0_g1_i2 0 141 0 162 sp Q5E958 RS8_BOVIN 57.8 206 81 2 45 644 1 206 7.7e-63 241.9 RS8_BOVIN reviewed 40S ribosomal protein S8 RPS8 Bos taurus (Bovine) 208 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; translation [GO:0006412] cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; ribonucleoprotein complex [GO:1990904] cytosolic small ribosomal subunit [GO:0022627]; membrane [GO:0016020]; ribonucleoprotein complex [GO:1990904]; structural constituent of ribosome [GO:0003735]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]; translation [GO:0006412] structural constituent of ribosome [GO:0003735] GO:0000462; GO:0003735; GO:0006412; GO:0016020; GO:0022627; GO:1990904