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Support for ingest of imaging data - DICOM #313

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Tracked by #226
jjgriff93 opened this issue Jul 25, 2023 · 2 comments
Open
Tracked by #226

Support for ingest of imaging data - DICOM #313

jjgriff93 opened this issue Jul 25, 2023 · 2 comments
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@jjgriff93
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jjgriff93 commented Jul 25, 2023

As well as typical relational data, following the implementation of #160 we can ingest any type of file. We should implement a Data Pot template that can ingest DICOM images and store / process them through stages of the datalake.

@jjgriff93 jjgriff93 mentioned this issue Jul 25, 2023
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@github-actions github-actions bot added the needs: triage Item is pending initial response by a maintainer. label Jul 25, 2023
@jjgriff93 jjgriff93 added User Story User Story level Item and removed needs: triage Item is pending initial response by a maintainer. labels Jul 25, 2023
@jjgriff93 jjgriff93 added this to the 0.2 milestone Jul 25, 2023
@jjgriff93 jjgriff93 added Feature Feature level item needs: triage Item is pending initial response by a maintainer. and removed User Story User Story level Item labels Jul 25, 2023
@stefpiatek
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stefpiatek commented Aug 10, 2023

Suggested requirements for allowing ingress of medical imaging data

  • Role based access control - users should only be able to access studies and images that they have been given access to
  • Encrypted transfer of pseudonymised imaging data (DICOM or a compatible API which can transfer linked images and metadata)
  • Reduce load on hospital imaging systems (Picture Archiving and Communication System [PACS] and Vendor-Neutral Archive [VNA]) by extracting studies and images once and storing in a central location
  • Users should be able to access the image server in the TRE while data is being uploaded (AFAIK, azure dicom server does not allow public and private endpoints both being enabled, so the TRE lost access to server while data was being uploaded)
  • Imaging module should be an optional part of flowEHR
  • Solution should define which DICOM SOP Classes will initially be supported (and consider whether a full DICOM conformance statement is required)

@stefpiatek
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  • improvements on PACS and VNA so this hopefully would have caught up, so could pull more data
  • would need to be driven by a project
  • @RichardClarke-dm to go through (existing?) list, or create one and then review the priority for this.

@stefpiatek stefpiatek removed the needs: triage Item is pending initial response by a maintainer. label Aug 21, 2023
@stefpiatek stefpiatek removed this from the 0.2 milestone Aug 21, 2023
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