diff --git a/Dockerfile b/Dockerfile index 7e6fbd5..5de9d5c 100755 --- a/Dockerfile +++ b/Dockerfile @@ -22,7 +22,7 @@ RUN python3 -m pip wheel --no-cache-dir --no-deps --wheel-dir /app/wheels -r req FROM python:3.11-slim # Install dependencies -RUN apt-get update && apt-get install -y libpq-dev +RUN apt-get update && apt-get install -y libpq-dev postgresql-client COPY --from=builder /app/wheels /wheels RUN python3 -m pip install --no-cache /wheels/* diff --git a/Dockerfile-dev b/Dockerfile-dev index d16848a..f8f74ae 100755 --- a/Dockerfile-dev +++ b/Dockerfile-dev @@ -22,7 +22,7 @@ RUN python3 -m pip wheel --no-cache-dir --no-deps --wheel-dir /app/wheels -r req FROM python:3.11-slim # Install dependencies -RUN apt-get update && apt-get install -y libpq-dev graphviz +RUN apt-get update && apt-get install -y libpq-dev graphviz postgresql-client COPY --from=builder /app/wheels /wheels RUN python3 -m pip install --no-cache /wheels/* diff --git a/ecodev_core/__init__.py b/ecodev_core/__init__.py index 0d5eae1..ed18c21 100644 --- a/ecodev_core/__init__.py +++ b/ecodev_core/__init__.py @@ -23,6 +23,7 @@ from ecodev_core.authentication import safe_get_user from ecodev_core.authentication import SCHEME from ecodev_core.authentication import Token +from ecodev_core.backup import backup from ecodev_core.check_dependencies import check_dependencies from ecodev_core.check_dependencies import compute_dependencies from ecodev_core.custom_equal import custom_equal @@ -64,7 +65,6 @@ from ecodev_core.safe_utils import SimpleReturn from ecodev_core.safe_utils import stringify - __all__ = [ 'AUTH', 'Token', 'get_app_services', 'attempt_to_log', 'get_current_user', 'is_admin_user', 'write_json_file', 'load_json_file', 'make_dir', 'check_dependencies', 'compute_dependencies', @@ -76,4 +76,4 @@ 'enum_converter', 'ServerSideFilter', 'get_rows', 'count_rows', 'ServerSideField', 'get_raw_df', 'generic_insertion', 'custom_equal', 'is_authorized_user', 'get_method', 'AppActivity', 'fastapi_monitor', 'dash_monitor', 'is_monitoring_user', 'get_recent_activities', 'select_user', - 'get_access_token', 'safe_get_user'] + 'get_access_token', 'safe_get_user', 'backup'] diff --git a/ecodev_core/backup.py b/ecodev_core/backup.py new file mode 100644 index 0000000..4465719 --- /dev/null +++ b/ecodev_core/backup.py @@ -0,0 +1,87 @@ +""" +Module implementing backup mechanism on a ftp server. +""" +import tarfile +from datetime import datetime +from pathlib import Path +from subprocess import PIPE +from subprocess import Popen +from subprocess import run +from subprocess import STDOUT +from typing import List + +from pydantic_settings import BaseSettings +from pydantic_settings import SettingsConfigDict + +from ecodev_core.db_connection import DB_URL +from ecodev_core.logger import logger_get + + +log = logger_get(__name__) + + +class BackUpSettings(BaseSettings): + """ + Settings class used to connect to the ftp server backup + """ + backup_username: str = '' + backup_password: str = '' + backup_url: str = '' + model_config = SettingsConfigDict(env_file='.env') + + +BCK = BackUpSettings() +BACKUP_URL = f'ftp://{BCK.backup_username}:{BCK.backup_password}@{BCK.backup_url}' + + +def backup(backed_folder: Path, nb_saves: int = 5) -> None: + """ + Backup db and backed_folder: write the dump/tar on the backup server and erase old copies + """ + timestamp = datetime.now().strftime('%Y_%m_%d_%Hh_%Mmn_%Ss') + _backup_db(Path.cwd() / f'db_{timestamp}.dump', nb_saves) + _backup_files(backed_folder, Path.cwd() / f'files_{timestamp}.tgz', nb_saves) + + +def _backup_db(db_dump_path: Path, nb_saves: int) -> None: + """ + Pg_dump of DB_URL db andwrite on the backup server + """ + process = Popen(['pg_dump', f'--dbname={DB_URL}', '-f', db_dump_path.name], + stdout=PIPE, stderr=STDOUT, cwd=db_dump_path.parent) + if not (process.communicate()[0]): + _backup_content(db_dump_path, nb_saves) + + +def _backup_files(backed_folder: Path, backup_file: Path, nb_saves: int) -> None: + """ + Zip backed_folder and write on the backup server + """ + with tarfile.open(backup_file, 'w:gz') as tar: + tar.add(backed_folder, arcname=backed_folder.name) + _backup_content(backup_file, nb_saves) + + +def _backup_content(file_to_backup: Path, nb_saves: int) -> None: + """ + Write file_to_backup on the backup server and delete versions so as to keep only nb_saves copies + """ + log.warning(f'Transferring backup to server: {file_to_backup}') + run(['lftp', '-c', f'open {BACKUP_URL}; put {file_to_backup}']) + backups_to_delete = _get_old_backups(file_to_backup, nb_saves) + log.info(f'deleting remote backups {backups_to_delete}') + for to_rm in backups_to_delete: + run(['lftp', '-c', f'open {BACKUP_URL}; rm {to_rm}'], capture_output=True, text=True) + log.info(f'deleting local {file_to_backup}') + file_to_backup.unlink() + + +def _get_old_backups(file_to_backup: Path, nb_saves: int) -> List[str]: + """ + Retrieve old versions of file_to_backup in order to erase them (more than nb_saves ago) + """ + output = run(['lftp', '-c', f'open {BACKUP_URL}; ls {file_to_backup.name.split(".")[0]}*'], + capture_output=True, text=True) + all_backups = sorted([x.split(' ')[-1] for x in output.stdout.splitlines()]) + log.info(f'existing remote backups {all_backups}') + return all_backups[:-nb_saves] diff --git a/ecodev_core/db_connection.py b/ecodev_core/db_connection.py index 9453cb1..c816647 100644 --- a/ecodev_core/db_connection.py +++ b/ecodev_core/db_connection.py @@ -2,6 +2,7 @@ Module implementing postgresql connection """ from typing import Callable +from urllib.parse import quote from pydantic_settings import BaseSettings from pydantic_settings import SettingsConfigDict @@ -28,7 +29,8 @@ class DbSettings(BaseSettings): DB = DbSettings() -DB_URL = f'postgresql://{DB.db_username}:{DB.db_password}@{DB.db_host}:{DB.db_port}/{DB.db_name}' +_PASSWORD = quote(DB.db_password, safe='') +DB_URL = f'postgresql://{DB.db_username}:{_PASSWORD}@{DB.db_host}:{DB.db_port}/{DB.db_name}' engine = create_engine(DB_URL) diff --git a/poetry.lock b/poetry.lock index 967a9da..fdd07ee 100644 --- a/poetry.lock +++ b/poetry.lock @@ -180,13 +180,13 @@ gmpy2 = ["gmpy2"] [[package]] name = "fastapi" -version = "0.109.2" +version = "0.110.0" description = "FastAPI framework, high performance, easy to learn, fast to code, ready for production" optional = false python-versions = ">=3.8" files = [ - {file = "fastapi-0.109.2-py3-none-any.whl", hash = "sha256:2c9bab24667293b501cad8dd388c05240c850b58ec5876ee3283c47d6e1e3a4d"}, - {file = "fastapi-0.109.2.tar.gz", hash = "sha256:f3817eac96fe4f65a2ebb4baa000f394e55f5fccdaf7f75250804bc58f354f73"}, + {file = "fastapi-0.110.0-py3-none-any.whl", hash = "sha256:87a1f6fb632a218222c5984be540055346a8f5d8a68e8f6fb647b1dc9934de4b"}, + {file = "fastapi-0.110.0.tar.gz", hash = "sha256:266775f0dcc95af9d3ef39bad55cff525329a931d5fd51930aadd4f428bf7ff3"}, ] 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