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Fraxinus crashes in debug build #2

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ekmungi opened this issue Jun 9, 2021 · 7 comments
Open

Fraxinus crashes in debug build #2

ekmungi opened this issue Jun 9, 2021 · 7 comments

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@ekmungi
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ekmungi commented Jun 9, 2021 •
edited
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Hi,

I have noticed that when compiling and launching Fraxinus in Debug build, it seems to crash after clicking OK in the window below.

image

The same does not occur in Release build. Has anyone encountered this problem?



18:36:02: Starting /home/anant/dev/libs/Fraxinus/CX/build_Debug/bin/Fraxinus ...
Using paths from build folder
[18:36:02.556][0]  --- Initialize services for Fraxinus...
[18:36:02.566][0] Installing all plugins...
[18:36:02.922][0] Starting plugin org.custusx.core.video
[18:36:02.924][0] Starting plugin org.custusx.acquisition
[18:36:02.925][0] Starting plugin org.custusx.registration.method.bronchoscopy
[18:36:02.925][0] Starting plugin org.custusx.usreconstruction.pnn
[18:36:02.928][0] Starting plugin org.custusx.registration.method.centerline
[18:36:02.931][0] Starting plugin org.custusx.virtualbronchoscopy
[18:36:02.932][0] Starting plugin org.custusx.core.patientmodel
[18:36:02.937][1] UsReconstructionImplService::selectData: Invalid input data
[18:36:02.937][0] Starting plugin org.custusx.usreconstruction.vnncl
Found 1 OpenCL platforms.
1 platforms selected for inspection.
Platform 0: NVIDIA Corporation
Looking for GPU devices only.
2 devices found for this platform.
Inspecting device 0 with the name GeForce RTX 2080 Ti
The device was accepted.
Inspecting device 1 with the name GeForce RTX 2080 Ti
The device was accepted.
The platform NVIDIA CUDA was selected as the best platform.
A total of 2 devices were selected for the context from this platform:
Device 0: GeForce RTX 2080 Ti
Device 1: GeForce RTX 2080 Ti
[18:36:03.180][0] Starting plugin org.custusx.registration.method.manual
[18:36:03.182][0] Starting plugin org.custusx.core.tracking.system.igstk
[18:36:03.182][0] Starting plugin org.custusx.filter.airwaysfromcenterline
[18:36:03.182][0] Starting plugin org.custusx.filter.routetotarget
[18:36:03.184][0] Starting plugin org.custusx.core.openigtlink3
[18:36:03.187][0] Starting plugin org.custusx.filter.accusurf
[18:36:03.188][0] Starting plugin org.custusx.fraxinus.widgets
[18:36:03.189][0] Set plugin to state [INSTALLED]: org.custusx.filter.airways
[18:36:03.189][0] Starting plugin org.custusx.usreconstruction
[18:36:03.190][0] Starting plugin org.custusx.core.tracking
[18:36:03.191][0] Installing tracking system: org.custusx.core.openigtlink3
[18:36:03.191][0] Installing tracking system: org.custusx.core.tracking.system.igstk
[18:36:03.192][0] Starting plugin org.custusx.core.filemanager
[18:36:03.202][3] Adding a reader/writer: MetaImageReader to: 0x2010230
[18:36:03.202][3] Adding a reader/writer: PNGImageReader to: 0x2010230
[18:36:03.202][3] Adding a reader/writer: PolyDataMeshReader to: 0x2010230
[18:36:03.202][3] Adding a reader/writer: XMLPolyDataMeshReader to: 0x2010230
[18:36:03.202][3] Adding a reader/writer: StlMeshReader to: 0x2010230
[18:36:03.202][3] Adding a reader/writer: NIfTIReader to: 0x2010230
[18:36:03.203][3] Adding a reader/writer: MNIReaderWriter to: 0x2010230
[18:36:03.203][3] Adding a reader/writer: DICOMReader to: 0x2010230
[18:36:03.203][0] Starting plugin org.custusx.anglecorrection
[18:36:03.203][0] Starting plugin org.custusx.calibration
[18:36:03.204][0] Starting plugin org.custusx.bronchoscopynavigation
[18:36:03.206][0] Starting plugin org.custusx.registration.method.landmark
[18:36:03.207][0] Starting plugin org.custusx.registration.method.commandline
[18:36:03.208][0] Starting plugin org.custusx.registration
[18:36:03.208][0] Starting plugin org.custusx.ceetron
[18:36:03.209][3] Adding a reader/writer: CgeoReaderWriter to: 0x2010230
[18:36:03.209][0] Starting plugin org.custusx.fraxinus.core.state
[18:36:03.213][0] Found valid VLC application: /usr/bin/vlc
[18:36:03.214][0] Starting plugin org.custusx.help
[18:36:03.216][1] HelpEngine: Cannot find docFile: /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch
[18:36:03.216][1] HelpEngine: Documentation registration failed: Cannot open documentation file /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch.
[18:36:03.216][0] Starting plugin org.custusx.registration.method.vessel
[18:36:03.218][0] Starting plugin org.custusx.registration.gui
[18:36:03.219][0] Starting plugin org.custusx.registration.method.plate
[18:36:03.220][0] Starting plugin org.custusx.core.view
[18:36:03.338][0] Layout 0 changed to 3D ACS Connected
[18:36:03.338][0] Starting plugin org.custusx.training
[18:36:03.340][0] Starting plugin org.custusx.registration.method.pointcloud
[18:36:03.342][3]  --- End initialize services.
[18:36:03.804][1] HelpEngine: Cannot find docFile: /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch
[18:36:03.804][1] HelpEngine: Documentation registration failed: Cannot open documentation file /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch.
[18:36:04.165][3] Found 1 writers that export image
[18:36:04.168][3] Found 3 writers that export mesh
[18:36:04.170][3] Found 0 writers that export pointMetric
addAdditionalDefaultLayouts
[18:36:04.385][0] Workflow change to [New/Load Patient]
[18:36:04.435][0] Layout 0 changed to 3D
[18:36:05.743][1] [QT] QXcbConnection: XCB error: 8 (BadMatch), sequence: 2054, resource id: 100663365, major code: 130 (Unknown), minor code: 3
[18:36:05.743][1] [QT] QXcbConnection: XCB error: 8 (BadMatch), sequence: 2072, resource id: 100663365, major code: 130 (Unknown), minor code: 3
[18:36:05.743][1] [QT] QXcbConnection: XCB error: 8 (BadMatch), sequence: 2075, resource id: 100663365, major code: 130 (Unknown), minor code: 3
[18:36:09.915][3] TRYING TO LOAD DATAMETRIC WITH PATH: /home/anant/Patients/Bronchoscopy/NAV_2.cx3/.
[18:36:09.915][3] Sym: 0
[18:36:09.915][3] Dir: 1
[18:36:09.915][3] File: 0
[18:36:09.915][3] does not exist
[18:36:09.941][3] TRYING TO LOAD DATAMETRIC WITH PATH: /home/anant/Patients/Bronchoscopy/NAV_2.cx3/.
[18:36:09.941][3] Sym: 0
[18:36:09.941][3] Dir: 1
[18:36:09.941][3] File: 0
[18:36:09.941][3] does not exist
qSetGlobalQHashSeed: forced seed value is not 0, cannot guarantee that the hashing functions will produce a stable value.qSetGlobalQHashSeed: forced seed value is not 0, cannot guarantee that the hashing functions will produce a stable value.terminate called after throwing an instance of 'ctkPluginDatabaseException'
  what():  ctkPluginDatabaseException: Problem closing database: Invalid connection plugins
18:36:17: The program has unexpectedly finished.
18:36:17: The process was ended forcefully.
18:36:17: /home/anant/dev/libs/Fraxinus/CX/build_Debug/bin/Fraxinus crashed.

Anant.
@ekmungi ekmungi changed the title Fraxinus crashes in debug mode Fraxinus crashes in debug build Jun 9, 2021
@olevs
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olevs commented Jun 10, 2021

Thanks for the error report.
Looking at your log it seems like the plugin org.custusx.filter.airways isn't running. It may not be working, but you can first try to start in manually. To do that you can open the widget called "Plugin Framework" (either by using the menu item "Window" or by right-clicking on the toolbar. In this widget, scroll down to the plugin, and press the double-arrow button. That should start the plugin if it is working.

@ekmungi
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ekmungi commented Jun 10, 2021 •
edited
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Nope that did not solve it. Here are couple of screenshots before and after doing the steps you suggested.

BEFORE:
image

AFTER:
image

I checked the same when starting the Release build, org.custusx.filter.airways has the same configuration in the "Plugin Framework". It is marked as "INSTALLED"

Here is the error report

[16:33:44.344][3] [QT] PluginEvent: [ "org.custusx.filter.airways" ] "Resolved"
[16:34:16.991][3] TRYING TO LOAD DATAMETRIC WITH PATH: /home/anant/Patients/Bronchoscopy/NAV_2.cx3/.
[16:34:16.991][3] Sym: 0
[16:34:16.991][3] Dir: 1
[16:34:16.991][3] File: 0
[16:34:16.991][3] does not exist
[16:34:17.019][3] TRYING TO LOAD DATAMETRIC WITH PATH: /home/anant/Patients/Bronchoscopy/NAV_2.cx3/.
[16:34:17.019][3] Sym: 0
[16:34:17.020][3] Dir: 1
[16:34:17.020][3] File: 0
[16:34:17.020][3] does not exist
qSetGlobalQHashSeed: forced seed value is not 0, cannot guarantee that the hashing functions will produce a stable value.qSetGlobalQHashSeed: forced seed value is not 0, cannot guarantee that the hashing functions will produce a stable value.terminate called after throwing an instance of 'ctkPluginDatabaseException'
  what():  ctkPluginDatabaseException: Problem closing database: Invalid connection plugins
16:34:20: The program has unexpectedly finished.
16:34:20: The process was ended forcefully.
16:34:20: /home/anant/dev/libs/Fraxinus/CX/build_Debug/bin/Fraxinus crashed.

@olevs
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olevs commented Jun 14, 2021

Hi Anant,

Do you think you can give us the stack trace from the crashing thread?
On Ubuntu I guess you can do this by turning on core dumps, and then for example use the "bt" command in gdb.

Ole Vegard

@ekmungi
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ekmungi commented Jun 14, 2021 •
edited
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Hi Ole,

Here you go.

BACKTRACE:

#0  __GI_raise (sig=sig@entry=6) at ../sysdeps/unix/sysv/linux/raise.c:50
        set = 
            {__val = {0, 140736993408376, 5580931242539315824, 5559805234679870309, 0, 0, 0, 0, 18428729679490842624, 18428729679490842624, 292057776250, 1095216660480, 4793284293456800428, 4863606126878392320, 0, 0}}
        pid = <optimized out>
        tid = <optimized out>
#1  0x00007ffff4b89859 in __GI_abort () at abort.c:79
        save_stage = 1
        act = 
          {__sigaction_handler = {sa_handler = 0x7ffff4d505c0 <_IO_2_1_stderr_>, sa_sigaction = 0x7ffff4d505c0 <_IO_2_1_stderr_>}, sa_mask = {__val = {140737300989376, 1, 2, 0, 140737299577553, 80, 140737300989824, 140737303064200, 5631600, 2, 0, 0, 140737354022060, 140736993408368, 140737354046940, 140736683069232}}, sa_flags = -186538332, sa_restorer = 0x7ffff4d50780 <stderr>}
        sigs = {__val = {32, 0 <repeats 15 times>}}
#2  0x00007ffff4e0f951 in  () at /usr/lib/x86_64-linux-gnu/libstdc++.so.6
#3  0x00007ffff4e1b47c in  () at /usr/lib/x86_64-linux-gnu/libstdc++.so.6
#4  0x00007ffff4e1a459 in  () at /usr/lib/x86_64-linux-gnu/libstdc++.so.6
#5  0x00007ffff4e1ae11 in __gxx_personality_v0 () at /usr/lib/x86_64-linux-gnu/libstdc++.so.6
#6  0x00007ffff4d66bdf in  () at /lib/x86_64-linux-gnu/libgcc_s.so.1
#7  0x00007ffff4d6759a in _Unwind_Resume () at /lib/x86_64-linux-gnu/libgcc_s.so.1
#8  0x00007ffff2e4f726 in ctkPluginStorageSQL::close() [clone .cold] ()
    at /media/anant/dev/libs/Fraxinus/CTK/build_Debug/CTK-build/bin/libCTKPluginFramework.so.0.1
#9  0x00007ffff2eae314 in ctkPluginStorageSQL::~ctkPluginStorageSQL() ()
    at /media/anant/dev/libs/Fraxinus/CTK/build_Debug/CTK-build/bin/libCTKPluginFramework.so.0.1
#10 0x00007ffff2e7381a in ctkPluginFrameworkContext::uninit() () at /media/anant/dev/libs/Fraxinus/CTK/build_Debug/CTK-build/bin/libCTKPluginFramework.so.0.1
#11 0x00007ffff2e9471f in ctkPluginFrameworkPrivate::shutdown0(bool, bool) ()
    at /media/anant/dev/libs/Fraxinus/CTK/build_Debug/CTK-build/bin/libCTKPluginFramework.so.0.1
#12 0x00007ffff2e950b0 in non-virtual thunk to QtConcurrent::RunFunctionTask<void>::run() ()
    at /media/anant/dev/libs/Fraxinus/CTK/build_Debug/CTK-build/bin/libCTKPluginFramework.so.0.1
#13 0x00007ffff503e66a in QThreadPoolThread::run() (this=0x4ff3f0) at thread/qthreadpool.cpp:100
        page = <optimized out>
        r = 0x21cda90
        expired = <optimized out>
        locker = {val = 5125272}
#14 0x00007ffff503ab35 in QThreadPrivate::start(void*) (arg=0x4ff3f0) at thread/qthread_unix.cpp:329
        thr = 0x4ff3f0
        data = 0x509c00
        __clframe = {__cancel_routine = 0x7ffff5039fa0 <QThreadPrivate::finish(void*)>, __cancel_arg = 0x4ff3f0, __do_it = 1, __cancel_type = <optimized out>}
#15 0x00007ffff08fc609 in start_thread (arg=<optimized out>) at pthread_create.c:477
        ret = <optimized out>
        pd = <optimized out>
        unwind_buf = 
              {cancel_jmp_buf = {{jmp_buf = {140736993412864, 7827264511033732353, 140737488343886, 140737488343887, 140737488344064, 140736993410688, -7827322787232486143, -7827284165550805759}, mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}}
        not_first_call = 0
#16 0x00007ffff4c86293 in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:95

COMPLETE APPLICATION OUTPUT

Starting program: /media/anant/dev/libs/Fraxinus/CX/build_Debug/bin/Fraxinus 
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1".
[New Thread 0x7fffeb3ec700 (LWP 391904)]
[New Thread 0x7fffe8fea700 (LWP 391905)]
[New Thread 0x7fffe3fff700 (LWP 391906)]
[New Thread 0x7fffe37fe700 (LWP 391907)]
[New Thread 0x7fffe2ffd700 (LWP 391908)]
[New Thread 0x7fffe27fc700 (LWP 391909)]
[New Thread 0x7fffe1ffb700 (LWP 391910)]
[New Thread 0x7fffe17fa700 (LWP 391911)]
[New Thread 0x7fffe0ff9700 (LWP 391912)]
[New Thread 0x7fffc3fff700 (LWP 391913)]
[New Thread 0x7fffc37fe700 (LWP 391914)]
[New Thread 0x7fffc2ffd700 (LWP 391915)]
[New Thread 0x7fffc27fc700 (LWP 391916)]
[New Thread 0x7fffc1ffb700 (LWP 391917)]
[New Thread 0x7fffc17fa700 (LWP 391918)]
[New Thread 0x7fffc0ff9700 (LWP 391919)]
[New Thread 0x7fff9bfff700 (LWP 391920)]
Using paths from build folder
[19:21:00.329][0]  --- Initialize services for Fraxinus...
[New Thread 0x7fff9b7fe700 (LWP 391921)]
[19:21:00.489][0] Installing all plugins...
[19:21:24.092][0] Starting plugin org.custusx.core.video
[19:21:24.094][0] Starting plugin org.custusx.acquisition
[19:21:24.095][0] Starting plugin org.custusx.registration.method.bronchoscopy
[19:21:24.096][0] Starting plugin org.custusx.usreconstruction.pnn
[19:21:24.140][0] Starting plugin org.custusx.registration.method.centerline
[19:21:24.690][0] Starting plugin org.custusx.virtualbronchoscopy
[19:21:24.834][0] Starting plugin org.custusx.core.patientmodel
[19:21:25.001][1] UsReconstructionImplService::selectData: Invalid input data
[19:21:25.002][0] Starting plugin org.custusx.usreconstruction.vnncl
Found 1 OpenCL platforms.
1 platforms selected for inspection.
Platform 0: NVIDIA Corporation
Looking for GPU devices only.
2 devices found for this platform.
Inspecting device 0 with the name GeForce RTX 2080 Ti
The device was accepted.
Inspecting device 1 with the name GeForce RTX 2080 Ti
The device was accepted.
The platform NVIDIA CUDA was selected as the best platform.
A total of 2 devices were selected for the context from this platform:
Device 0: GeForce RTX 2080 Ti
Device 1: GeForce RTX 2080 Ti
[New Thread 0x7fff8790f700 (LWP 391940)]
[New Thread 0x7fff8710e700 (LWP 391941)]
[New Thread 0x7fff81fff700 (LWP 391942)]
[New Thread 0x7fff817fe700 (LWP 391943)]
[New Thread 0x7fff80ffd700 (LWP 391944)]
[New Thread 0x7fff55fff700 (LWP 391945)]
[New Thread 0x7fff557fe700 (LWP 391946)]
[New Thread 0x7fff54ffd700 (LWP 391947)]
[New Thread 0x7fff547fc700 (LWP 391948)]
[19:21:25.351][0] Starting plugin org.custusx.registration.method.manual
[19:21:25.602][0] Starting plugin org.custusx.core.tracking.system.igstk
[19:21:25.602][0] Starting plugin org.custusx.filter.airwaysfromcenterline
[19:21:25.603][0] Starting plugin org.custusx.filter.routetotarget
[19:21:25.789][0] Starting plugin org.custusx.core.openigtlink3
[19:21:25.967][0] Starting plugin org.custusx.filter.accusurf
[19:21:26.106][0] Starting plugin org.custusx.fraxinus.widgets
[19:21:26.204][0] Set plugin to state [INSTALLED]: org.custusx.filter.airways
[19:21:26.204][0] Starting plugin org.custusx.usreconstruction
[19:21:26.204][0] Starting plugin org.custusx.core.tracking
[19:21:26.372][0] Installing tracking system: org.custusx.core.openigtlink3
[19:21:26.373][0] Installing tracking system: org.custusx.core.tracking.system.igstk
[19:21:26.373][0] Starting plugin org.custusx.core.filemanager
[19:21:26.756][3] Adding a reader/writer: MetaImageReader to: 0x1b7c710
[19:21:26.756][3] Adding a reader/writer: PNGImageReader to: 0x1b7c710
[19:21:26.756][3] Adding a reader/writer: PolyDataMeshReader to: 0x1b7c710
[19:21:26.756][3] Adding a reader/writer: XMLPolyDataMeshReader to: 0x1b7c710
[19:21:26.756][3] Adding a reader/writer: StlMeshReader to: 0x1b7c710
[19:21:26.757][3] Adding a reader/writer: NIfTIReader to: 0x1b7c710
[19:21:26.757][3] Adding a reader/writer: MNIReaderWriter to: 0x1b7c710
[19:21:26.757][3] Adding a reader/writer: DICOMReader to: 0x1b7c710
[19:21:26.757][0] Starting plugin org.custusx.anglecorrection
[19:21:26.758][0] Starting plugin org.custusx.calibration
[19:21:27.127][0] Starting plugin org.custusx.bronchoscopynavigation
[19:21:27.369][0] Starting plugin org.custusx.registration.method.landmark
[19:21:27.371][0] Starting plugin org.custusx.registration.method.commandline
[19:21:27.612][0] Starting plugin org.custusx.registration
[19:21:27.613][0] Starting plugin org.custusx.ceetron
[19:21:27.650][3] Adding a reader/writer: CgeoReaderWriter to: 0x1b7c710
[19:21:27.650][0] Starting plugin org.custusx.fraxinus.core.state
[19:21:27.754][0] Found valid VLC application: /usr/bin/vlc
[19:21:27.851][0] Starting plugin org.custusx.help
[19:21:28.198][1] HelpEngine: Cannot find docFile: /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch
[19:21:28.198][1] HelpEngine: Documentation registration failed: Cannot open documentation file /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch.
[19:21:28.198][0] Starting plugin org.custusx.registration.method.vessel
[19:21:28.363][0] Starting plugin org.custusx.registration.gui
[19:21:28.621][0] Starting plugin org.custusx.registration.method.plate
[19:21:28.663][0] Starting plugin org.custusx.core.view
[19:21:29.474][0] Layout 0 changed to 3D ACS Connected
[19:21:29.475][0] Starting plugin org.custusx.training
[19:21:29.545][0] Starting plugin org.custusx.registration.method.pointcloud
[19:21:29.665][3]  --- End initialize services.
[New Thread 0x7fff507ac700 (LWP 391949)]
[19:21:30.051][1] HelpEngine: Cannot find docFile: /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch
[19:21:30.051][1] HelpEngine: Documentation registration failed: Cannot open documentation file /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch.
[19:21:30.277][3] Found 1 writers that export image
[19:21:30.279][3] Found 3 writers that export mesh
[19:21:30.281][3] Found 0 writers that export pointMetric
addAdditionalDefaultLayouts
[19:21:30.411][0] Workflow change to [New/Load Patient]
[19:21:30.464][0] Layout 0 changed to 3D
[New Thread 0x7fff4f8bf700 (LWP 391950)]
[New Thread 0x7fff4f0be700 (LWP 391951)]
[New Thread 0x7fff4e8bd700 (LWP 391952)]
[New Thread 0x7fff4e0b5700 (LWP 391953)]
[Thread 0x7fff4f0be700 (LWP 391951) exited]
[Thread 0x7fff4f8bf700 (LWP 391950) exited]
[New Thread 0x7fff4f8bf700 (LWP 391954)]
[New Thread 0x7fff4f0be700 (LWP 391955)]
[Thread 0x7fff4f0be700 (LWP 391955) exited]
[Thread 0x7fff4f8bf700 (LWP 391954) exited]
[New Thread 0x7fff4f8bf700 (LWP 391956)]
[New Thread 0x7fff4f0be700 (LWP 391957)]
[Thread 0x7fff4f0be700 (LWP 391957) exited]
[Thread 0x7fff4e0b5700 (LWP 391953) exited]
[Thread 0x7fff4e8bd700 (LWP 391952) exited]
[New Thread 0x7fff4e8bd700 (LWP 391968)]
[Thread 0x7fff4e8bd700 (LWP 391968) exited]
[19:21:36.414][0] Workflow change to [Process]
[19:21:36.415][1] ImageTF3D::parseXml() found no alpha transferfunction
[19:21:36.415][1] ImageTF3D::parseXml() found no color transferfunction
[New Thread 0x7fff4e8bd700 (LWP 391971)]
[New Thread 0x7fff4e0b5700 (LWP 391972)]
[New Thread 0x7fff4f0be700 (LWP 391973)]
[New Thread 0x7fff3ffff700 (LWP 391974)]
[New Thread 0x7fff3f7fe700 (LWP 391975)]
[New Thread 0x7fff3effd700 (LWP 391976)]
[New Thread 0x7fff3e7fc700 (LWP 391977)]
[New Thread 0x7fff3dffb700 (LWP 391978)]
[New Thread 0x7fff3d7fa700 (LWP 391979)]
[New Thread 0x7fff3cff9700 (LWP 391980)]
[New Thread 0x7fff2ffff700 (LWP 391981)]
[New Thread 0x7fff2f7fe700 (LWP 391982)]
[New Thread 0x7fff2effd700 (LWP 391983)]
[New Thread 0x7fff2e7fc700 (LWP 391984)]
[New Thread 0x7fff2dffb700 (LWP 391985)]
[Thread 0x7fff3e7fc700 (LWP 391977) exited]
[Thread 0x7fff3cff9700 (LWP 391980) exited]
[Thread 0x7fff3f7fe700 (LWP 391975) exited]
[Thread 0x7fff4f0be700 (LWP 391973) exited]
[Thread 0x7fff3dffb700 (LWP 391978) exited]
[Thread 0x7fff4e0b5700 (LWP 391972) exited]
[Thread 0x7fff3ffff700 (LWP 391974) exited]
[Thread 0x7fff3d7fa700 (LWP 391979) exited]
[Thread 0x7fff3effd700 (LWP 391976) exited]
[Thread 0x7fff2f7fe700 (LWP 391982) exited]
[Thread 0x7fff4e8bd700 (LWP 391971) exited]
[Thread 0x7fff2e7fc700 (LWP 391984) exited]
[Thread 0x7fff2ffff700 (LWP 391981) exited]
[Thread 0x7fff2dffb700 (LWP 391985) exited]
[Thread 0x7fff2effd700 (LWP 391983) exited]
[New Thread 0x7fff2dffb700 (LWP 391986)]
[New Thread 0x7fff2e7fc700 (LWP 391987)]
[New Thread 0x7fff2effd700 (LWP 391988)]
[New Thread 0x7fff2f7fe700 (LWP 391989)]
[New Thread 0x7fff4f0be700 (LWP 391990)]
[New Thread 0x7fff4e8bd700 (LWP 391991)]
[New Thread 0x7fff4e0b5700 (LWP 391992)]
[New Thread 0x7fff3ffff700 (LWP 391993)]
[New Thread 0x7fff3f7fe700 (LWP 391994)]
[New Thread 0x7fff3effd700 (LWP 391995)]
[New Thread 0x7fff3e7fc700 (LWP 391996)]
[New Thread 0x7fff3dffb700 (LWP 391997)]
[New Thread 0x7fff3d7fa700 (LWP 391998)]
[New Thread 0x7fff3cff9700 (LWP 391999)]
[New Thread 0x7fff2ffff700 (LWP 392000)]
[Thread 0x7fff4e0b5700 (LWP 391992) exited]
[Thread 0x7fff2effd700 (LWP 391988) exited]
[Thread 0x7fff2f7fe700 (LWP 391989) exited]
[Thread 0x7fff2e7fc700 (LWP 391987) exited]
[Thread 0x7fff3ffff700 (LWP 391993) exited]
[Thread 0x7fff2dffb700 (LWP 391986) exited]
[Thread 0x7fff3f7fe700 (LWP 391994) exited]
[Thread 0x7fff4f0be700 (LWP 391990) exited]
[Thread 0x7fff4e8bd700 (LWP 391991) exited]
[Thread 0x7fff3dffb700 (LWP 391997) exited]
[Thread 0x7fff3effd700 (LWP 391995) exited]
[Thread 0x7fff3d7fa700 (LWP 391998) exited]
[Thread 0x7fff3e7fc700 (LWP 391996) exited]
[Thread 0x7fff3cff9700 (LWP 391999) exited]
[Thread 0x7fff2ffff700 (LWP 392000) exited]
[New Thread 0x7fff2ffff700 (LWP 392001)]
[New Thread 0x7fff3cff9700 (LWP 392002)]
[New Thread 0x7fff3d7fa700 (LWP 392003)]
[New Thread 0x7fff3dffb700 (LWP 392004)]
[New Thread 0x7fff4f0be700 (LWP 392005)]
[New Thread 0x7fff4e8bd700 (LWP 392006)]
[New Thread 0x7fff4e0b5700 (LWP 392007)]
[New Thread 0x7fff3ffff700 (LWP 392008)]
[New Thread 0x7fff3f7fe700 (LWP 392009)]
[New Thread 0x7fff3effd700 (LWP 392010)]
[New Thread 0x7fff3e7fc700 (LWP 392011)]
[New Thread 0x7fff2f7fe700 (LWP 392012)]
[New Thread 0x7fff2effd700 (LWP 392013)]
[New Thread 0x7fff2e7fc700 (LWP 392014)]
[New Thread 0x7fff2dffb700 (LWP 392015)]
[Thread 0x7fff3cff9700 (LWP 392002) exited]
[Thread 0x7fff2effd700 (LWP 392013) exited]
[Thread 0x7fff4f0be700 (LWP 392005) exited]
[Thread 0x7fff2ffff700 (LWP 392001) exited]
[Thread 0x7fff3ffff700 (LWP 392008) exited]
[Thread 0x7fff4e0b5700 (LWP 392007) exited]
[Thread 0x7fff3f7fe700 (LWP 392009) exited]
[Thread 0x7fff3effd700 (LWP 392010) exited]
[Thread 0x7fff3e7fc700 (LWP 392011) exited]
[Thread 0x7fff4e8bd700 (LWP 392006) exited]
[Thread 0x7fff3d7fa700 (LWP 392003) exited]
[Thread 0x7fff2f7fe700 (LWP 392012) exited]
[Thread 0x7fff3dffb700 (LWP 392004) exited]
[Thread 0x7fff2e7fc700 (LWP 392014) exited]
[Thread 0x7fff2dffb700 (LWP 392015) exited]
[19:21:36.626][0] Converting image Lung_0_5_CE from short to unsigned short
[19:21:36.888][3] zero-size bounding box in texture slicer- ignoring
[19:21:36.891][3] zero-size bounding box in texture slicer- ignoring
[19:21:36.894][3] zero-size bounding box in texture slicer- ignoring
[19:21:36.897][3] zero-size bounding box in texture slicer- ignoring
[19:21:36.901][3] zero-size bounding box in texture slicer- ignoring
[19:21:36.904][3] zero-size bounding box in texture slicer- ignoring
[19:21:36.906][0] Layout 0 changed to 3D ACS
qSetGlobalQHashSeed: forced seed value is not 0, cannot guarantee that the hashing functions will produce a stable value.[19:21:36.915][0] Saved patient /home/anant/Patients/Bronchoscopy/NAV_3.cx3
[New Thread 0x7fff2dffb700 (LWP 392017)]
[New Thread 0x7fff2e7fc700 (LWP 392018)]
[New Thread 0x7fff2effd700 (LWP 392019)]
[New Thread 0x7fff2f7fe700 (LWP 392020)]
[New Thread 0x7fff3d3ff700 (LWP 392021)]
[New Thread 0x7fff3cbfe700 (LWP 392022)]
[New Thread 0x7fff2ffff700 (LWP 392023)]
[New Thread 0x7fff2d7fa700 (LWP 392024)]
[New Thread 0x7fff2cff9700 (LWP 392025)]
[New Thread 0x7fff1137e700 (LWP 392026)]
[New Thread 0x7fff10b7d700 (LWP 392027)]
[New Thread 0x7ffeebfff700 (LWP 392028)]
[New Thread 0x7ffeeb7fe700 (LWP 392029)]
[New Thread 0x7ffeeaffd700 (LWP 392030)]
[New Thread 0x7ffeea7fc700 (LWP 392031)]
[Thread 0x7fff3d3ff700 (LWP 392021) exited]
[Thread 0x7fff2effd700 (LWP 392019) exited]
[Thread 0x7fff10b7d700 (LWP 392027) exited]
[Thread 0x7fff2dffb700 (LWP 392017) exited]
[Thread 0x7fff2f7fe700 (LWP 392020) exited]
[Thread 0x7fff2ffff700 (LWP 392023) exited]
[Thread 0x7fff2e7fc700 (LWP 392018) exited]
[Thread 0x7ffeebfff700 (LWP 392028) exited]
[Thread 0x7fff3cbfe700 (LWP 392022) exited]
[Thread 0x7fff2cff9700 (LWP 392025) exited]
[Thread 0x7ffeeb7fe700 (LWP 392029) exited]
[Thread 0x7fff1137e700 (LWP 392026) exited]
[Thread 0x7fff2d7fa700 (LWP 392024) exited]
[Thread 0x7ffeeaffd700 (LWP 392030) exited]
[Thread 0x7ffeea7fc700 (LWP 392031) exited]
[New Thread 0x7ffeea7fc700 (LWP 392032)]
[New Thread 0x7ffeeaffd700 (LWP 392033)]
[New Thread 0x7ffeeb7fe700 (LWP 392034)]
[New Thread 0x7ffeebfff700 (LWP 392035)]
[New Thread 0x7fff3d3ff700 (LWP 392036)]
[New Thread 0x7fff3cbfe700 (LWP 392037)]
[New Thread 0x7fff2ffff700 (LWP 392038)]
[New Thread 0x7fff2f7fe700 (LWP 392039)]
[New Thread 0x7fff2effd700 (LWP 392040)]
[New Thread 0x7fff2e7fc700 (LWP 392041)]
[New Thread 0x7fff2dffb700 (LWP 392042)]
[New Thread 0x7fff2d7fa700 (LWP 392043)]
[New Thread 0x7fff2cff9700 (LWP 392044)]
[New Thread 0x7fff1137e700 (LWP 392045)]
[New Thread 0x7fff10b7d700 (LWP 392046)]
[Thread 0x7ffeeb7fe700 (LWP 392034) exited]
[Thread 0x7fff3cbfe700 (LWP 392037) exited]
[Thread 0x7ffeea7fc700 (LWP 392032) exited]
[Thread 0x7fff3d3ff700 (LWP 392036) exited]
[Thread 0x7fff2ffff700 (LWP 392038) exited]
[Thread 0x7fff2effd700 (LWP 392040) exited]
[Thread 0x7fff2cff9700 (LWP 392044) exited]
[Thread 0x7fff2d7fa700 (LWP 392043) exited]
[Thread 0x7ffeebfff700 (LWP 392035) exited]
[Thread 0x7ffeeaffd700 (LWP 392033) exited]
[Thread 0x7fff2e7fc700 (LWP 392041) exited]
[Thread 0x7fff10b7d700 (LWP 392046) exited]
[Thread 0x7fff2f7fe700 (LWP 392039) exited]
[Thread 0x7fff1137e700 (LWP 392045) exited]
[Thread 0x7fff2dffb700 (LWP 392042) exited]
[19:21:37.005][0] Converting image Lung_0_5_CE from short to unsigned short
[New Thread 0x7fff10b7d700 (LWP 392048)]
[New Thread 0x7fff1137e700 (LWP 392049)]
[New Thread 0x7fff2cff9700 (LWP 392050)]
[New Thread 0x7fff2d7fa700 (LWP 392051)]
[New Thread 0x7fff2efff700 (LWP 392052)]
[New Thread 0x7fff2e7fe700 (LWP 392053)]
[New Thread 0x7fff2dffd700 (LWP 392054)]
[New Thread 0x7ffeebfff700 (LWP 392055)]
[New Thread 0x7ffeeb7fe700 (LWP 392056)]
[New Thread 0x7ffeeaffd700 (LWP 392057)]
[New Thread 0x7ffeea7fc700 (LWP 392058)]
[New Thread 0x7ffee9ffb700 (LWP 392059)]
[New Thread 0x7ffee97fa700 (LWP 392060)]
[New Thread 0x7ffee8ff9700 (LWP 392061)]
[New Thread 0x7ffee3fff700 (LWP 392062)]
[Thread 0x7fff2efff700 (LWP 392052) exited]
[Thread 0x7ffeeb7fe700 (LWP 392056) exited]
[Thread 0x7fff10b7d700 (LWP 392048) exited]
[Thread 0x7fff1137e700 (LWP 392049) exited]
[Thread 0x7fff2e7fe700 (LWP 392053) exited]
[Thread 0x7fff2cff9700 (LWP 392050) exited]
[Thread 0x7fff2d7fa700 (LWP 392051) exited]
[Thread 0x7ffeebfff700 (LWP 392055) exited]
[Thread 0x7fff2dffd700 (LWP 392054) exited]
[Thread 0x7ffeeaffd700 (LWP 392057) exited]
[Thread 0x7ffee97fa700 (LWP 392060) exited]
[Thread 0x7ffee8ff9700 (LWP 392061) exited]
[Thread 0x7ffeea7fc700 (LWP 392058) exited]
[Thread 0x7ffee9ffb700 (LWP 392059) exited]
[Thread 0x7ffee3fff700 (LWP 392062) exited]
[New Thread 0x7ffee3fff700 (LWP 392063)]
[New Thread 0x7ffee8ff9700 (LWP 392064)]
[New Thread 0x7ffee97fa700 (LWP 392065)]
[New Thread 0x7ffee9ffb700 (LWP 392066)]
[New Thread 0x7fff2efff700 (LWP 392067)]
[New Thread 0x7fff2e7fe700 (LWP 392068)]
[New Thread 0x7fff2dffd700 (LWP 392069)]
[New Thread 0x7fff2d7fc700 (LWP 392070)]
[New Thread 0x7fff2cffb700 (LWP 392071)]
[New Thread 0x7fff1137e700 (LWP 392072)]
[New Thread 0x7fff10b7d700 (LWP 392073)]
[New Thread 0x7ffeebfff700 (LWP 392074)]
[New Thread 0x7ffeeb7fe700 (LWP 392075)]
[New Thread 0x7ffeeaffd700 (LWP 392076)]
[New Thread 0x7ffeea7fc700 (LWP 392077)]
[Thread 0x7ffee8ff9700 (LWP 392064) exited]
[Thread 0x7ffee3fff700 (LWP 392063) exited]
[Thread 0x7ffee9ffb700 (LWP 392066) exited]
[Thread 0x7fff2efff700 (LWP 392067) exited]
[Thread 0x7fff10b7d700 (LWP 392073) exited]
[Thread 0x7ffeeb7fe700 (LWP 392075) exited]
[Thread 0x7fff1137e700 (LWP 392072) exited]
[Thread 0x7fff2d7fc700 (LWP 392070) exited]
[Thread 0x7fff2dffd700 (LWP 392069) exited]
[Thread 0x7fff2cffb700 (LWP 392071) exited]
[Thread 0x7fff2e7fe700 (LWP 392068) exited]
[Thread 0x7ffeeaffd700 (LWP 392076) exited]
[Thread 0x7ffee97fa700 (LWP 392065) exited]
[Thread 0x7ffeebfff700 (LWP 392074) exited]
[Thread 0x7ffeea7fc700 (LWP 392077) exited]
[19:21:39.650][0] Converting image Lung_0_5_CE from short to unsigned short
[19:21:39.801][1] UsReconstructionImplService::selectData: Invalid input data
[19:21:39.802][0] Set Active Patient: /home/anant/Patients/Bronchoscopy/NAV_3.cx3
INFO [140737161160832] Device manager initialize..
WARNING [140737161160832] NVIDIA platform was detected, disabling OpenGL interop
INFO [140737161160832] Found 1 OpenCL platforms.
INFO [140737161160832] 1 platforms selected for inspection.
INFO [140737161160832] Platform 0: NVIDIA Corporation
INFO [140737161160832] This platform has 2 available devices in total
INFO [140737161160832] Looking for GPU devices only.
INFO [140737161160832] getDevices(): 0 getDevices() end.
INFO [140737161160832] 2 selected.
INFO [140737161160832] Inspecting device 0 with the name GeForce RTX 2080 Ti
INFO [140737161160832] The device was accepted.
INFO [140737161160832] Inspecting device 1 with the name GeForce RTX 2080 Ti
INFO [140737161160832] The device was accepted.
INFO [140737161160832] GeForce RTX 2080 Ti has 68 compute units
INFO [140737161160832] The device GeForce RTX 2080 Ti got a score of 1000068
INFO [140737161160832] GeForce RTX 2080 Ti has 68 compute units
INFO [140737161160832] The device GeForce RTX 2080 Ti got a score of 1000068
INFO [140737161160832] The platform NVIDIA CUDA was selected as the best platform.
INFO [140737161160832] A total of 1 devices were selected for the context from this platform:
INFO [140737161160832] The best device was: GeForce RTX 2080 Ti
[New Thread 0x7ffeea7fc700 (LWP 392078)]
[New Thread 0x7ffeeaffd700 (LWP 392079)]
[New Thread 0x7ffeeb7fe700 (LWP 392080)]
[New Thread 0x7ffeebfff700 (LWP 392081)]
[New Thread 0x7fff4ecbe700 (LWP 392082)]
[New Thread 0x7fff4e0b5700 (LWP 392083)]
[New Thread 0x7fff3efff700 (LWP 392084)]
[Thread 0x7fff3efff700 (LWP 392084) exited]
[Thread 0x7fff4e0b5700 (LWP 392083) exited]
[Thread 0x7fff4ecbe700 (LWP 392082) exited]
[Thread 0x7ffeebfff700 (LWP 392081) exited]
[Thread 0x7ffeeb7fe700 (LWP 392080) exited]
[Thread 0x7ffeeaffd700 (LWP 392079) exited]
[Thread 0x7ffeea7fc700 (LWP 392078) exited]
[19:21:42.268][2] Exception caught: [Release Object]
in thread [MAIN]
[19:21:42.268][0]  --- Shutting down Fraxinus...
qSetGlobalQHashSeed: forced seed value is not 0, cannot guarantee that the hashing functions will produce a stable value.[19:21:42.277][0] Saved patient /home/anant/Patients/Bronchoscopy/NAV_3.cx3
[19:21:42.296][0] Layout 0 changed to 3D ACS
[19:21:42.449][1] UsReconstructionImplService::selectData: Invalid input data
[Thread 0x7fff547fc700 (LWP 391948) exited]
[Thread 0x7fff54ffd700 (LWP 391947) exited]
[Thread 0x7fff557fe700 (LWP 391946) exited]
[Thread 0x7fff55fff700 (LWP 391945) exited]
[Thread 0x7fff80ffd700 (LWP 391944) exited]
[Thread 0x7fff8710e700 (LWP 391941) exited]
[Thread 0x7fff8790f700 (LWP 391940) exited]
[Thread 0x7fff817fe700 (LWP 391943) exited]
[Thread 0x7fff81fff700 (LWP 391942) exited]
[19:21:42.533][0] Uninstalling tracking system: org.custusx.core.tracking.system.igstk
[19:21:42.534][0] Uninstalling tracking system: org.custusx.core.openigtlink3
[19:21:42.591][1] [QT] QSqlDatabasePrivate::database: requested database does not belong to the calling thread.
terminate called after throwing an instance of 'ctkPluginDatabaseException'
  what():  ctkPluginDatabaseException: Problem closing database: Invalid connection plugins

@ekmungi
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ekmungi commented Jun 15, 2021 •
edited
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UPDATE: Never mind that didnt change anything.

I used gcc-9.3.0, just wondering if this would have any issue at run time?

I am trying with gcc-7.5.0 today, will let you know if that changes anything.

Anant.

@ekmungi
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ekmungi commented Jun 21, 2021

Hi Ole,

Just wanted to check back with you if you had a chance to look at the backtrack. Thanks!

Anant.

@ekmungi
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ekmungi commented Jun 28, 2021

Hi Ole,

I realized that while I debug some of the superbuild libs source is not found by Qtcreator. Seems like during cmake configuration, there may be some missing links. Although, when developing, it is able to navigate pretty much all the code. However, during debug it is not able to find the source for some external libraries such as CTK.

I was wondering how do you resolve this in your local build, do you use an alternate IDE perhaps?

Thanks for your assistance.

Sincerely,
Anant.

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