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max_insert_size not referenced in Snakemake rule #10

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clayfos opened this issue Sep 1, 2023 · 0 comments
Open

max_insert_size not referenced in Snakemake rule #10

clayfos opened this issue Sep 1, 2023 · 0 comments

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@clayfos
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clayfos commented Sep 1, 2023

Hey Chris, I noticed that the max_insert_size added to the config file in commit 823d3a4 isn't referenced correctly in the quality_filter_with_bamtools rule. I had to add another param in the rule to use it. I also assume that it was supposed to actually be max_insert_size: "<1000" so that bamtools filters properly.
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