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I'd originally left rhesus germline V genes with the "ORF" prefix in place as SONAR has them, but I should probably remove them. IgDiscover will very occasionally detect (technically correctly, as far as I can tell, based on the removed introns) transcribed antibody recombinations for V genes labeled non-functional ORFs in Ramesh et al. 2017's rhesus reference, but, these are still presumably non-functional from a protein standpoint, so we'd rather not have them reported in the output. The names also cause trouble for some of SONAR's parsing code. Removing them would make the germline sequences here consistently limited to functional cases.
I'd originally left rhesus germline V genes with the "ORF" prefix in place as SONAR has them, but I should probably remove them. IgDiscover will very occasionally detect (technically correctly, as far as I can tell, based on the removed introns) transcribed antibody recombinations for V genes labeled non-functional ORFs in Ramesh et al. 2017's rhesus reference, but, these are still presumably non-functional from a protein standpoint, so we'd rather not have them reported in the output. The names also cause trouble for some of SONAR's parsing code. Removing them would make the germline sequences here consistently limited to functional cases.
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