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slurm-status.py: could not query side car #111

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mhorlacher opened this issue May 30, 2023 · 0 comments
Open

slurm-status.py: could not query side car #111

mhorlacher opened this issue May 30, 2023 · 0 comments

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@mhorlacher
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When canceling the snakemake process with Ctrl+C, I'd expect Snakemake to scancel all jobs (cluster-cancel: scancel) and terminate gracefully. However, I'm encountering the error below:

slurm-status.py: could not query side car: HTTPConnectionPool(host='localhost', port=42129): Max retries exceeded with url: /job/status/3253425 (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x7f2579923100>: Failed to establish a new connection: [Errno 111] Connection refused'))

Perhaps slurm-status.py exists (due to Ctrl+C), while slurm-status.py is still trying to query it?

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