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Two requirements are missing to run kilosort3 container "remfile" and "pynwb"-
e.g., The code below produces ModuleNotFoundError for these two dependencies:
# spike sort with kilosort 3 from container (uses apptainer) sorting_KS3 = ss.run_sorter(sorter_name="kilosort3", singularity_image=True, recording=recording)
Currently the container runs successfully by adding the extra_requirements argument:
# spike sort with kilosort 3 from container (uses apptainer) sorting_KS3 = ss.run_sorter(sorter_name="kilosort3", singularity_image=True, recording=recording, extra_requirements=["remfile","pynwb"])
The text was updated successfully, but these errors were encountered:
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Two requirements are missing to run kilosort3 container "remfile" and "pynwb"-
e.g., The code below produces ModuleNotFoundError for these two dependencies:
Currently the container runs successfully by adding the extra_requirements argument:
The text was updated successfully, but these errors were encountered: