diff --git a/.all-contributorsrc b/.all-contributorsrc index 062d463f..bcaede86 100644 --- a/.all-contributorsrc +++ b/.all-contributorsrc @@ -20,6 +20,7 @@ "doc", "ideas", "infra", + "maintenance", "platform", "projectManagement", "question", @@ -41,6 +42,7 @@ "doc", "ideas", "infra", + "maintenance", "platform", "projectManagement", "question", @@ -74,6 +76,7 @@ "bug", "code", "content", + "research", "review" ] }, @@ -83,7 +86,9 @@ "avatar_url": "https://avatars.githubusercontent.com/u/32029599?v=4", "profile": "", "contributions": [ - "bug" + "bug", + "research", + "review" ] }, { @@ -92,7 +97,9 @@ "avatar_url": "https://avatars.githubusercontent.com/u/8766764?v=4", "profile": "", "contributions": [ - "bug" + "bug", + "research", + "code" ] }, { @@ -121,7 +128,8 @@ "contributions": [ "bug", "content", - "code" + "code", + "research" ] }, { @@ -187,7 +195,8 @@ "contributions": [ "bug", "content", - "code" + "code", + "research" ] }, { @@ -196,7 +205,8 @@ "avatar_url": "https://avatars.githubusercontent.com/u/3072880?v=4", "profile": "https://orcid.org/0000-0003-3947-488X", "contributions": [ - "bug" + "bug", + "research" ] }, { @@ -205,7 +215,8 @@ "avatar_url": "https://avatars.githubusercontent.com/u/45748199?v=4", "profile": "https://github.com/mpagni12", "contributions": [ - "bug" + "bug", + "research" ] }, { @@ -215,7 +226,8 @@ "profile": "https://github.com/ANiknejad", "contributions": [ "bug", - "content" + "content", + "research" ] }, { @@ -224,7 +236,8 @@ "avatar_url": "https://avatars.githubusercontent.com/u/62765618?v=4", "profile": "https://github.com/CadavidJoseL", "contributions": [ - "bug" + "bug", + "research" ] }, { @@ -234,7 +247,8 @@ "profile": "https://github.com/johan-gson", "contributions": [ "bug", - "content" + "content", + "research" ] }, { @@ -252,7 +266,8 @@ "avatar_url": "https://avatars.githubusercontent.com/u/22166601?v=4", "profile": "https://github.com/Rasools", "contributions": [ - "ideas" + "ideas", + "research" ] }, { @@ -261,7 +276,8 @@ "avatar_url": "https://avatars.githubusercontent.com/u/6586371?v=4", "profile": "https://github.com/stairs", "contributions": [ - "bug" + "bug", + "content" ] }, { @@ -273,8 +289,43 @@ "bug", "code", "data", + "doc", + "ideas", + "infra", + "maintenance", + "platform", "projectManagement", - "research" + "research", + "review" + ] + }, + { + "login": "Devlin-Moyer", + "name": "Devlin Moyer", + "avatar_url": "https://avatars.githubusercontent.com/u/33460176?v=4", + "profile": "https://orcid.org/0000-0002-6997-9531", + "contributions": [ + "bug", + "research", + "review" + ] + }, + { + "login": "manas-kohli", + "name": "manas-kohli", + "avatar_url": "https://avatars.githubusercontent.com/u/5028979?v=4", + "profile": "https://github.com/manas-kohli", + "contributions": [ + "bug" + ] + }, + { + "login": "juliette-cooke", + "name": "Juliette", + "avatar_url": "https://avatars.githubusercontent.com/u/90753730?v=4", + "profile": "https://github.com/juliette-cooke", + "contributions": [ + "bug" ] } ], diff --git a/.gitignore b/.gitignore index 46fe83b4..bb1fc721 100644 --- a/.gitignore +++ b/.gitignore @@ -20,4 +20,8 @@ Thumbs.db *.exe.* # Windows dynamic library files -*.dll \ No newline at end of file +*.dll + +yarn.lock +package.json +node_modules/ \ No newline at end of file diff --git a/README.md b/README.md index 2433c86f..56aa8331 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ [![Join the chat at https://gitter.im/SysBioChalmers/Human-GEM](https://badges.gitter.im/SysBioChalmers/Human-GEM.svg)](https://gitter.im/SysBioChalmers/Human-GEM?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge) [![GitHub version](https://badge.fury.io/gh/sysbiochalmers%2FHuman-GEM.svg)](https://badge.fury.io/gh/sysbiochalmers%2FHuman-GEM) [![DOI](https://zenodo.org/badge/105752644.svg)](https://zenodo.org/badge/latestdoi/105752644) -[![All Contributors](https://img.shields.io/badge/all_contributors-25-success.svg)](#contributors) +[![All Contributors](https://img.shields.io/badge/all_contributors-28-success.svg)](#contributors) ### Brief Model Description @@ -124,37 +124,40 @@ A collection of manually curated 2D metabolic maps associated with Human-GEM are - + + - - - + + - - + + + + - + - - - + - - + + + + - - - + - + + + +
Anne Niknejad
Anne Niknejad
πŸ› πŸ–‹		Anne Niknejad
Anne Niknejad
πŸ› πŸ–‹ πŸ”¬		 Avlant
Avlant
πŸ› πŸ–‹		 BenjamΓ­n SΓ‘nchez
BenjamΓ­n SΓ‘nchez
πŸ’¬		 Daniel Weindl
Daniel Weindl
πŸ›		Devlin Moyer
Devlin Moyer
πŸ› πŸ”¬ πŸ‘€		 Eduard Kerkhoven
Eduard Kerkhoven
πŸ’¬		Hao Wang
Hao Wang
πŸ› πŸ’» πŸ”£ πŸ“– πŸ€” πŸš‡ πŸ“¦ πŸ“† πŸ’¬ πŸ”¬ πŸ‘€ ⚠️ πŸ“’		Jonathan Robinson
Jonathan Robinson
πŸ› πŸ’» πŸ”£ πŸ“– πŸ€” πŸš‡ πŸ“¦ πŸ“† πŸ’¬ πŸ”¬ πŸ‘€ βœ… πŸ“’		Jorge Ferreira
Jorge Ferreira
πŸ›		Hao Wang
Hao Wang
πŸ› πŸ’» πŸ”£ πŸ“– πŸ€” πŸš‡ 🚧 πŸ“¦ πŸ“† πŸ’¬ πŸ”¬ πŸ‘€ ⚠️ πŸ“’		Jonathan Robinson
Jonathan Robinson
πŸ› πŸ’» πŸ”£ πŸ“– πŸ€” πŸš‡ 🚧 πŸ“¦ πŸ“† πŸ’¬ πŸ”¬ πŸ‘€ βœ… πŸ“’
Jose L. Cadavid
Jose L. Cadavid
πŸ›		Marco Pagni
Marco Pagni
πŸ›		Jorge Ferreira
Jorge Ferreira
πŸ›		Jose L. Cadavid
Jose L. Cadavid
πŸ› πŸ”¬		Juliette
Juliette
πŸ›		Marco Pagni
Marco Pagni
πŸ› πŸ”¬		 Mihail Anton
Mihail Anton
πŸ› πŸ’» πŸ€” πŸš‡ πŸ‘€ ⚠️ πŸ“’		Pierre-Etienne Cholley
Pierre-Etienne Cholley
πŸ› πŸ’» πŸ–‹ πŸ‘€		Pierre-Etienne Cholley
Pierre-Etienne Cholley
πŸ› πŸ’» πŸ–‹ πŸ”¬ πŸ‘€		 Pierre-Etienne Cholley
Pierre-Etienne Cholley
πŸ›		PkiwiBird
PkiwiBird
πŸ›		Pranas Grigaitis
Pranas Grigaitis
πŸ› πŸ–‹ πŸ’»		PΔ±nar Kocabaş
Pınar Kocabaş
πŸ›		PkiwiBird
PkiwiBird
πŸ› πŸ”¬ πŸ’»
Rasool Saghaleyni
Rasool Saghaleyni
πŸ€”		Sarah Cherkaoui
Sarah Cherkaoui
πŸ› πŸ–‹ πŸ’»		Pranas Grigaitis
Pranas Grigaitis
πŸ› πŸ–‹ πŸ’» πŸ”¬		PΔ±nar Kocabaş
Pınar Kocabaş
πŸ› πŸ”¬ πŸ‘€		Rasool Saghaleyni
Rasool Saghaleyni
πŸ€” πŸ”¬		Sarah Cherkaoui
Sarah Cherkaoui
πŸ› πŸ–‹ πŸ’» πŸ”¬		 Simonas MarciΕ‘auskas
Simonas MarciΕ‘auskas
πŸ’¬		 TunahanCakir
TunahanCakir
πŸ›		 Xuhang Li
Xuhang Li
πŸ›		feiranl
feiranl
πŸ› πŸ’» πŸ”£ πŸ“† πŸ”¬		johan-gson
johan-gson
πŸ› πŸ–‹		smoretti
smoretti
πŸ›		feiranl
feiranl
πŸ› πŸ’» πŸ”£ πŸ“– πŸ€” πŸš‡ 🚧 πŸ“¦ πŸ“† πŸ”¬ πŸ‘€
stairs
stairs
πŸ›		johan-gson
johan-gson
πŸ› πŸ–‹ πŸ”¬		manas-kohli
manas-kohli
πŸ›		smoretti
smoretti
πŸ› πŸ”¬		stairs
stairs
πŸ› πŸ–‹
diff --git a/code/io/importYaml.m b/code/io/importYaml.m index ffe11221..7f1d7d71 100644 --- a/code/io/importYaml.m +++ b/code/io/importYaml.m @@ -67,6 +67,7 @@ model.eccodes={}; model.rxnNotes={}; model.genes={}; +model.geneShortNames={}; model.metNames={}; model.metComps={}; model.inchis={}; @@ -252,7 +253,12 @@ % import genes: if section == 4 - model = readFieldValue(model, 'genes', tline_value); + switch tline_key + case 'id' + model = readFieldValue(model, 'genes', tline_value); + case 'name' + model = readFieldValue(model, 'geneShortNames', tline_value); + end end % import compartments: diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index a693e5d3..067f3bf0 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -4,7 +4,7 @@ short_name: "Human-GEM" full_name: "Generic genome-scale metabolic model of Homo sapiens" version: "" - date: "2023-04-24" + date: "2023-05-04" taxonomy: "9606" github: "https://github.com/SysBioChalmers/Human-GEM" description: "Genome-scale metabolic models are valuable tools to study metabolism and provide a scaffold for the integrative analysis of omics data. This is the latest version of Human-GEM, which is a genome-scale metabolic model of a generic human cell. The objective of Human-GEM is to serve as a community model for enabling integrative and mechanistic studies of human metabolism." @@ -306610,5798 +306610,8695 @@ - genes: - !!omap - id: "ENSG00000000419" + - name: "DPM1" - !!omap - id: "ENSG00000001036" + - name: "FUCA2" - !!omap - id: "ENSG00000001084" + - name: "GCLC" - !!omap - id: "ENSG00000001630" + - name: "CYP51A1" - !!omap - id: "ENSG00000002549" + - name: "LAP3" - !!omap - id: "ENSG00000002587" + - name: "HS3ST1" - !!omap - id: "ENSG00000002726" + - name: "AOC1" - !!omap - id: "ENSG00000002746" + - name: "HECW1" - !!omap - id: "ENSG00000003137" + - name: "CYP26B1" - !!omap - id: "ENSG00000003987" + - name: "MTMR7" - !!omap - id: "ENSG00000003989" + - name: "SLC7A2" - !!omap - id: "ENSG00000004455" + - name: "AK2" - !!omap - id: "ENSG00000004468" + - name: "CD38" - !!omap - id: "ENSG00000004478" + - name: "FKBP4" - !!omap - id: "ENSG00000004779" + - name: "NDUFAB1" - !!omap - id: "ENSG00000004799" + - name: "PDK4" - !!omap - id: "ENSG00000004809" + - name: "SLC22A16" - !!omap - id: "ENSG00000004864" + - name: "SLC25A13" - !!omap - id: "ENSG00000004939" + - name: "SLC4A1" - !!omap - id: "ENSG00000004961" + - name: "HCCS" - !!omap - id: "ENSG00000005022" + - name: "SLC25A5" - !!omap - id: "ENSG00000005075" + - name: "POLR2J" - !!omap - id: "ENSG00000005187" + - name: "ACSM3" - !!omap - id: "ENSG00000005339" + - name: "CREBBP" - !!omap - id: "ENSG00000005381" + - name: "MPO" - !!omap - id: "ENSG00000005421" + - name: "PON1" - !!omap - id: "ENSG00000005469" + - name: "CROT" - !!omap - id: "ENSG00000005471" + - name: "ABCB4" - !!omap - id: "ENSG00000005810" + - name: "MYCBP2" - !!omap - id: "ENSG00000005882" + - name: "PDK2" - !!omap - id: "ENSG00000006007" + - name: "GDE1" - !!omap - id: "ENSG00000006071" + - name: "ABCC8" - !!omap - id: "ENSG00000006530" + - name: "AGK" - !!omap - id: "ENSG00000006534" + - name: "ALDH3B1" - !!omap - id: "ENSG00000006625" + - name: "GGCT" - !!omap - id: "ENSG00000006695" + - name: "COX10" - !!omap - id: "ENSG00000006756" + - name: "ARSD" - !!omap - id: "ENSG00000006757" + - name: "PNPLA4" - !!omap - id: "ENSG00000007001" + - name: "UPP2" - !!omap - id: "ENSG00000007168" + - name: "PAFAH1B1" - !!omap - id: "ENSG00000007171" + - name: "NOS2" - !!omap - id: "ENSG00000007216" + - name: "SLC13A2" - !!omap - id: "ENSG00000007350" + - name: "TKTL1" - !!omap - id: "ENSG00000007541" + - name: "PIGQ" - !!omap - id: "ENSG00000007933" + - name: "FMO3" - !!omap - id: "ENSG00000007944" + - name: "MYLIP" - !!omap - id: "ENSG00000008130" + - name: "NADK" - !!omap - id: "ENSG00000008311" + - name: "AASS" - !!omap - id: "ENSG00000008394" + - name: "MGST1" - !!omap - id: "ENSG00000008438" + - name: "PGLYRP1" - !!omap - id: "ENSG00000008513" + - name: "ST3GAL1" - !!omap - id: "ENSG00000009335" + - name: "UBE3C" - !!omap - id: "ENSG00000009413" + - name: "REV3L" - !!omap - id: "ENSG00000009830" + - name: "POMT2" - !!omap - id: "ENSG00000010256" + - name: "UQCRC1" - !!omap - id: "ENSG00000010379" + - name: "SLC6A13" - !!omap - id: "ENSG00000010404" + - name: "IDS" - !!omap - id: "ENSG00000010932" + - name: "FMO1" - !!omap - id: "ENSG00000011009" + - name: "LYPLA2" - !!omap - id: "ENSG00000011083" + - name: "SLC6A7" - !!omap - id: "ENSG00000011198" + - name: "ABHD5" - !!omap - id: "ENSG00000011275" + - name: "RNF216" - !!omap - id: "ENSG00000011405" + - name: "PIK3C2A" - !!omap - id: "ENSG00000012232" + - name: "EXTL3" - !!omap - id: "ENSG00000012660" + - name: "ELOVL5" - !!omap - id: "ENSG00000012779" + - name: "ALOX5" - !!omap - id: "ENSG00000012963" + - name: "UBR7" - !!omap - id: "ENSG00000013288" + - name: "MAN2B2" - !!omap - id: "ENSG00000013375" + - name: "PGM3" - !!omap - id: "ENSG00000013392" + - name: "RWDD2A" - !!omap - id: "ENSG00000013503" + - name: "POLR3B" - !!omap - id: "ENSG00000013561" + - name: "RNF14" - !!omap - id: "ENSG00000014138" + - name: "POLA2" - !!omap - id: "ENSG00000014257" + - name: "ACP3" - !!omap - id: "ENSG00000014641" + - name: "MDH1" - !!omap - id: "ENSG00000015413" + - name: "DPEP1" - !!omap - id: "ENSG00000015520" + - name: "NPC1L1" - !!omap - id: "ENSG00000015532" + - name: "XYLT2" - !!omap - id: "ENSG00000016391" + - name: "CHDH" - !!omap - id: "ENSG00000016864" + - name: "GLT8D1" - !!omap - id: "ENSG00000017260" + - name: "ATP2C1" - !!omap - id: "ENSG00000017483" + - name: "SLC38A5" - !!omap - id: "ENSG00000017797" + - name: "RALBP1" - !!omap - id: "ENSG00000018280" + - name: "SLC11A1" - !!omap - id: "ENSG00000018510" + - name: "AGPS" - !!omap - id: "ENSG00000018625" + - name: "ATP1A2" - !!omap - id: "ENSG00000019186" + - name: "CYP24A1" - !!omap - id: "ENSG00000021461" + - name: "CYP3A43" - !!omap - id: "ENSG00000021488" + - name: "SLC7A9" - !!omap - id: "ENSG00000021826" + - name: "CPS1" - !!omap - id: "ENSG00000023041" + - name: "ZDHHC6" - !!omap - id: "ENSG00000023228" + - name: "NDUFS1" - !!omap - id: "ENSG00000023330" + - name: "ALAS1" - !!omap - id: "ENSG00000023572" + - name: "GLRX2" - !!omap - id: "ENSG00000023697" + - name: "DERA" - !!omap - id: "ENSG00000023839" + - name: "ABCC2" - !!omap - id: "ENSG00000023909" + - name: "GCLM" - !!omap - id: "ENSG00000024048" + - name: "UBR2" - !!omap - id: "ENSG00000025423" + - name: "HSD17B6" - !!omap - id: "ENSG00000025708" + - name: "TYMP" - !!omap - id: "ENSG00000025800" + - name: "KPNA6" - !!omap - id: "ENSG00000026652" + - name: "AGPAT4" - !!omap - id: "ENSG00000027847" + - name: "B4GALT7" - !!omap - id: "ENSG00000030066" + - name: "NUP160" - !!omap - id: "ENSG00000031698" + - name: "SARS1" - !!omap - id: "ENSG00000032444" + - name: "PNPLA6" - !!omap - id: "ENSG00000033011" + - name: "ALG1" - !!omap - id: "ENSG00000033100" + - name: "CHPF2" - !!omap - id: "ENSG00000033170" + - name: "FUT8" - !!omap - id: "ENSG00000033178" + - name: "UBA6" - !!omap - id: "ENSG00000033627" + - name: "ATP6V0A1" - !!omap - id: "ENSG00000033867" + - name: "SLC4A7" - !!omap - id: "ENSG00000034677" + - name: "RNF19A" - !!omap - id: "ENSG00000035687" + - name: "ADSS2" - !!omap - id: "ENSG00000036473" + - name: "OTC" - !!omap - id: "ENSG00000036530" + - name: "CYP46A1" - !!omap - id: "ENSG00000036565" + - name: "SLC18A1" - !!omap - id: "ENSG00000036672" + - name: "USP2" - !!omap - id: "ENSG00000037757" + - name: "MRI1" - !!omap - id: "ENSG00000037897" + - name: "METTL1" - !!omap - id: "ENSG00000038002" + - name: "AGA" - !!omap - id: "ENSG00000038210" + - name: "PI4K2B" - !!omap - id: "ENSG00000038274" + - name: "MAT2B" - !!omap - id: "ENSG00000039123" + - name: "MTREX" - !!omap - id: "ENSG00000039650" + - name: "PNKP" - !!omap - id: "ENSG00000040933" + - name: "INPP4A" - !!omap - id: "ENSG00000041880" + - name: "PARP3" - !!omap - id: "ENSG00000043514" + - name: "TRIT1" - !!omap - id: "ENSG00000044446" + - name: "PHKA2" - !!omap - id: "ENSG00000047230" + - name: "CTPS2" - !!omap - id: "ENSG00000047249" + - name: "ATP6V1H" - !!omap - id: "ENSG00000047315" + - name: "POLR2B" - !!omap - id: "ENSG00000047410" + - name: "TPR" - !!omap - id: "ENSG00000047457" + - name: "CP" - !!omap - id: "ENSG00000048028" + - name: "USP28" - !!omap - id: "ENSG00000048392" + - name: "RRM2B" - !!omap - id: "ENSG00000049239" + - name: "H6PD" - !!omap - id: "ENSG00000049759" + - name: "NEDD4L" - !!omap - id: "ENSG00000049860" + - name: "HEXB" - !!omap - id: "ENSG00000050438" + - name: "SLC4A8" - !!omap - id: "ENSG00000051341" + - name: "POLQ" - !!omap - id: "ENSG00000051382" + - name: "PIK3CB" - !!omap - id: "ENSG00000052802" + - name: "MSMO1" - !!omap - id: "ENSG00000053371" + - name: "AKR7A2" - !!omap - id: "ENSG00000054148" + - name: "PHPT1" - !!omap - id: "ENSG00000054179" + - name: "ENTPD2" - !!omap - id: "ENSG00000054267" + - name: "ARID4B" - !!omap - id: "ENSG00000054392" + - name: "HHAT" - !!omap - id: "ENSG00000054983" + - name: "GALC" - !!omap - id: "ENSG00000055483" + - name: "USP36" - !!omap - id: "ENSG00000055609" + - name: "KMT2C" - !!omap - id: "ENSG00000056998" + - name: "GYG2" - !!omap - id: "ENSG00000057252" + - name: "SOAT1" - !!omap - id: "ENSG00000058056" + - name: "USP13" - !!omap - id: "ENSG00000058600" + - name: "POLR3E" - !!omap - id: "ENSG00000058668" + - name: "ATP2B4" - !!omap - id: "ENSG00000058804" + - name: "NDC1" - !!omap - id: "ENSG00000058866" + - name: "DGKG" - !!omap - id: "ENSG00000059377" + - name: "TBXAS1" - !!omap - id: "ENSG00000059378" + - name: "PARP12" - !!omap - id: "ENSG00000059573" + - name: "ALDH18A1" - !!omap - id: "ENSG00000059804" + - name: "SLC2A3" - !!omap - id: "ENSG00000060642" + - name: "PIGV" - !!omap - id: "ENSG00000060762" + - name: "MPC1" - !!omap - id: "ENSG00000060971" + - name: "ACAA1" - !!omap - id: "ENSG00000060982" + - name: "BCAT1" - !!omap - id: "ENSG00000061918" + - name: "GUCY1B1" - !!omap - id: "ENSG00000062282" + - name: "DGAT2" - !!omap - id: "ENSG00000062485" + - name: "CS" - !!omap - id: "ENSG00000062822" + - name: "POLD1" - !!omap - id: "ENSG00000063176" + - name: "SPHK2" - !!omap - id: "ENSG00000063601" + - name: "MTMR1" - !!omap - id: "ENSG00000063854" + - name: "HAGH" - !!omap - id: "ENSG00000064225" + - name: "ST3GAL6" - !!omap - id: "ENSG00000064270" + - name: "ATP2C2" - !!omap - id: "ENSG00000064601" + - 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!!omap - id: "ENSG00000112077" + - name: "RHAG" - !!omap - id: "ENSG00000112096" + - name: "SOD2" - !!omap - id: "ENSG00000112130" + - name: "RNF8" - !!omap - id: "ENSG00000112293" + - name: "GPLD1" - !!omap - id: "ENSG00000112294" + - name: "ALDH5A1" - !!omap - id: "ENSG00000112299" + - name: "VNN1" - !!omap - id: "ENSG00000112303" + - name: "VNN2" - !!omap - id: "ENSG00000112304" + - name: "ACOT13" - !!omap - id: "ENSG00000112309" + - name: "B3GAT2" - !!omap - id: "ENSG00000112337" + - name: "SLC17A2" - !!omap - id: "ENSG00000112367" + - name: "FIG4" - !!omap - id: "ENSG00000112394" + - name: "SLC16A10" - !!omap - id: "ENSG00000112473" + - name: "SLC39A7" - !!omap - id: "ENSG00000112499" + - name: "SLC22A2" - !!omap - id: "ENSG00000112541" + - name: "PDE10A" - !!omap - id: "ENSG00000112695" + - name: "COX7A2" - !!omap - id: "ENSG00000112699" + - name: "GMDS" - !!omap - id: "ENSG00000112759" + - name: "SLC29A1" - !!omap - id: "ENSG00000112874" + - name: "NUDT12" - !!omap - id: "ENSG00000112893" + - name: "MAN2A1" - !!omap - id: "ENSG00000112941" + - name: "TENT4A" - !!omap - id: "ENSG00000112972" + - name: "HMGCS1" - !!omap - id: "ENSG00000112992" + - name: "NNT" - !!omap - id: "ENSG00000113073" + - name: "SLC4A9" - !!omap - id: "ENSG00000113083" + - name: "LOX" - !!omap - id: "ENSG00000113161" + - name: "HMGCR" - !!omap - id: "ENSG00000113163" + - name: "CERT1" - !!omap - id: "ENSG00000113231" + - name: "PDE8B" - !!omap - id: "ENSG00000113269" + - name: "RNF130" - !!omap - id: "ENSG00000113273" + - name: "ARSB" - !!omap - id: "ENSG00000113356" + - name: "POLR3G" - !!omap - id: "ENSG00000113396" + - name: "SLC27A6" - !!omap - id: "ENSG00000113407" + - name: "TARS1" - !!omap - id: "ENSG00000113448" + - name: "PDE4D" - !!omap - id: "ENSG00000113456" + - name: "RAD1" - !!omap - id: "ENSG00000113492" + - name: "AGXT2" - !!omap - id: "ENSG00000113504" + - name: "SLC12A7" - !!omap - id: "ENSG00000113532" + - name: "ST8SIA4" - !!omap - id: "ENSG00000113552" + - name: "GNPDA1" - !!omap - id: "ENSG00000113569" + - name: "NUP155" - !!omap - id: "ENSG00000113593" + - name: "PPWD1" - !!omap - id: "ENSG00000113643" + - name: "RARS1" - !!omap - id: "ENSG00000113732" + - name: "ATP6V0E1" - !!omap - id: "ENSG00000113790" + - name: "EHHADH" - !!omap - id: "ENSG00000113924" + - name: "HGD" - !!omap - id: "ENSG00000114021" + - name: "NIT2" - !!omap - id: "ENSG00000114054" + - name: "PCCB" - !!omap - id: "ENSG00000114062" + - name: "UBE3A" - !!omap - id: "ENSG00000114113" + - name: "RBP2" - !!omap - id: "ENSG00000114115" + - name: "RBP1" - !!omap - id: "ENSG00000114124" + - name: "GRK7" - !!omap - id: "ENSG00000114166" + - name: "KAT2B" - !!omap - id: "ENSG00000114200" + - name: "BCHE" - !!omap - id: "ENSG00000114268" + - name: "PFKFB4" - !!omap - id: "ENSG00000114316" + - name: "USP4" - !!omap - id: "ENSG00000114374" + - name: "USP9Y" - !!omap - id: "ENSG00000114378" + - name: "HYAL1" - !!omap - id: "ENSG00000114423" + - name: "CBLB" - !!omap - id: "ENSG00000114480" + - name: "GBE1" - !!omap - id: "ENSG00000114491" + - name: "UMPS" - !!omap - id: "ENSG00000114573" + - name: "ATP6V1A" - !!omap - id: "ENSG00000114770" + - name: "ABCC5" - !!omap - id: "ENSG00000114771" + - name: "AADAC" - !!omap - id: "ENSG00000114805" + - name: "PLCH1" - !!omap - id: "ENSG00000114857" + - name: "NKTR" - !!omap - id: "ENSG00000114902" + - name: "SPCS1" - !!omap - id: "ENSG00000114923" + - name: "SLC4A3" - !!omap - id: "ENSG00000114956" + - name: "DGUOK" - !!omap - id: "ENSG00000114982" + - name: "KANSL3" - !!omap - id: "ENSG00000114999" + - name: "TTL" - !!omap - id: "ENSG00000115020" + - name: "PIKFYVE" - !!omap - id: "ENSG00000115159" + - name: "GPD2" - !!omap - id: "ENSG00000115252" + - name: "PDE1A" - !!omap - id: "ENSG00000115275" + - name: "MOGS" - !!omap - id: "ENSG00000115286" + - name: "NDUFS7" - !!omap - id: "ENSG00000115339" + - name: "GALNT3" - !!omap - id: "ENSG00000115350" + - name: "POLE4" - !!omap - id: "ENSG00000115361" + - name: "ACADL" - !!omap - id: "ENSG00000115392" + - name: "FANCL" - !!omap - id: "ENSG00000115419" + - name: "GLS" - !!omap - id: "ENSG00000115421" + - name: "PAPOLG" - !!omap - id: "ENSG00000115425" + - name: "PECR" - !!omap - id: "ENSG00000115464" + - name: "USP34" - !!omap - id: "ENSG00000115488" + - name: "NEU2" - !!omap - id: "ENSG00000115525" + - name: "ST3GAL5" - !!omap - id: "ENSG00000115526" + - name: "CHST10" - !!omap - id: "ENSG00000115556" + - name: "PLCD4" - !!omap - id: "ENSG00000115616" + - name: "SLC9A2" - !!omap - id: "ENSG00000115652" + - name: "UXS1" - !!omap - id: "ENSG00000115657" + - name: "ABCB6" - !!omap - id: "ENSG00000115665" + - name: "SLC5A7" - !!omap - id: "ENSG00000115677" + - name: "HDLBP" - !!omap - id: "ENSG00000115705" + - name: "TPO" - !!omap - id: "ENSG00000115758" + - name: "ODC1" - !!omap - id: "ENSG00000115760" + - name: "BIRC6" - !!omap - id: "ENSG00000115828" + - name: "QPCT" - !!omap - id: "ENSG00000115840" + - name: "SLC25A12" - !!omap - id: "ENSG00000115850" + - name: "LCT" - !!omap - id: "ENSG00000115866" + - name: "DARS1" - !!omap - id: "ENSG00000115884" + - name: "SDC1" - !!omap - id: "ENSG00000115902" + - name: "SLC1A4" - !!omap - id: "ENSG00000115919" + - name: "KYNU" - !!omap - id: "ENSG00000116005" + - name: "PCYOX1" - !!omap - id: "ENSG00000116039" + - name: "ATP6V1B1" - !!omap - id: "ENSG00000116096" + - name: "SPR" - !!omap - id: "ENSG00000116120" + - name: "FARSB" - !!omap - id: "ENSG00000116133" + - name: "DHCR24" - !!omap - id: "ENSG00000116157" + - name: "GPX7" - !!omap - id: "ENSG00000116171" + - name: "SCP2" - !!omap - id: "ENSG00000116199" + - name: "FAM20B" - !!omap - id: "ENSG00000116237" + - name: "ICMT" - !!omap - id: "ENSG00000116337" + - name: "AMPD2" - !!omap - id: "ENSG00000116353" + - name: "MECR" - !!omap - id: "ENSG00000116459" + - name: "ATP5PB" - !!omap - id: "ENSG00000116514" + - name: "RNF19B" - !!omap - id: "ENSG00000116539" + - name: "ASH1L" - !!omap - id: "ENSG00000116649" + - name: "SRM" - !!omap - id: "ENSG00000116704" + - name: "SLC35D1" - !!omap - id: "ENSG00000116711" + - name: "PLA2G4A" - !!omap - id: "ENSG00000116745" + - name: "RPE65" - !!omap - id: "ENSG00000116748" + - name: "AMPD1" - !!omap - id: "ENSG00000116761" + - name: "CTH" - !!omap - id: "ENSG00000116771" + - name: "AGMAT" - !!omap - id: "ENSG00000116783" + - name: "TNNI3K" - !!omap - id: "ENSG00000116791" + - name: "CRYZ" - !!omap - id: "ENSG00000116882" + - name: "HAO2" - !!omap - id: "ENSG00000116906" + - name: "GNPAT" - !!omap - id: "ENSG00000116981" + - name: "NT5C1A" - !!omap - id: "ENSG00000116984" + - name: "MTR" - !!omap - id: "ENSG00000117009" + - name: "KMO" - !!omap - id: "ENSG00000117054" + - name: "ACADM" - !!omap - id: "ENSG00000117069" + - name: "ST6GALNAC5" - !!omap - id: "ENSG00000117115" + - name: "PADI2" - !!omap - id: "ENSG00000117118" + - name: "SDHB" - !!omap - id: "ENSG00000117143" + - name: "UAP1" - !!omap - id: "ENSG00000117215" + - name: "PLA2G2D" - !!omap - id: "ENSG00000117305" + - name: "HMGCL" - !!omap - id: "ENSG00000117308" + - name: "GALE" - !!omap - id: "ENSG00000117394" + - name: "SLC2A1" - !!omap - id: "ENSG00000117410" + - name: "ATP6V0B" - !!omap - id: "ENSG00000117411" + - name: "B4GALT2" - !!omap - id: "ENSG00000117448" + - name: "AKR1A1" - !!omap - id: "ENSG00000117450" + - name: "PRDX1" - !!omap - id: "ENSG00000117461" + - name: "PIK3R3" - !!omap - id: "ENSG00000117479" + - name: "SLC19A2" - !!omap - id: "ENSG00000117480" + - name: "FAAH" - !!omap - id: "ENSG00000117528" + - name: "ABCD3" - !!omap - id: "ENSG00000117543" + - name: "DPH5" - !!omap - id: "ENSG00000117592" + - name: "PRDX6" - !!omap - id: "ENSG00000117594" + - name: "HSD11B1" - !!omap - id: "ENSG00000117600" + - name: "PLPPR4" - !!omap - id: "ENSG00000117620" + - name: "SLC35A3" - !!omap - id: "ENSG00000117643" + - name: "MAN1C1" - !!omap - id: "ENSG00000117682" + - name: "DHDDS" - !!omap - id: "ENSG00000117834" + - name: "SLC5A9" - !!omap - id: "ENSG00000117984" + - name: "CTSD" - !!omap - id: "ENSG00000118017" + - name: "A4GNT" - !!omap - id: "ENSG00000118058" + - name: "KMT2A" - !!omap - id: "ENSG00000118094" + - name: "TREH" - !!omap - id: "ENSG00000118137" + - name: "APOA1" - !!omap - id: "ENSG00000118160" + - name: "SLC8A2" - !!omap - id: "ENSG00000118276" + - name: "B4GALT6" - !!omap - id: "ENSG00000118298" + - name: "CA14" - !!omap - id: "ENSG00000118363" + - name: "SPCS2" - !!omap - id: "ENSG00000118369" + - name: "USP35" - !!omap - id: "ENSG00000118402" + - name: "ELOVL4" - !!omap - id: "ENSG00000118514" + - name: "ALDH8A1" - !!omap - id: "ENSG00000118518" + - name: "RNF146" - !!omap - id: "ENSG00000118520" + - name: "ARG1" - !!omap - id: "ENSG00000118596" + - name: "SLC16A7" - !!omap - id: "ENSG00000118705" + - name: "RPN2" - !!omap - id: "ENSG00000118777" + - name: "ABCG2" - !!omap - id: "ENSG00000119013" + - name: "NDUFB3" - !!omap - id: "ENSG00000119048" + - name: "UBE2B" - !!omap - id: "ENSG00000119125" + - name: "GDA" - !!omap - id: "ENSG00000119227" + - name: "PIGZ" - !!omap - id: "ENSG00000119392" + - name: "GLE1" - !!omap - id: "ENSG00000119401" + - name: "TRIM32" - 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name: "PCMT1" - !!omap - id: "ENSG00000120329" + - name: "SLC25A2" - !!omap - id: "ENSG00000120437" + - name: "ACAT2" - !!omap - id: "ENSG00000120563" + - name: "LYZL1" - !!omap - id: "ENSG00000120697" + - name: "ALG5" - !!omap - id: "ENSG00000120820" + - name: "GLT8D2" - !!omap - id: "ENSG00000120915" + - name: "EPHX2" - !!omap - id: "ENSG00000120942" + - name: "UBIAD1" - !!omap - id: "ENSG00000120992" + - name: "LYPLA1" - !!omap - id: "ENSG00000121039" + - name: "RDH10" - !!omap - id: "ENSG00000121053" + - name: "EPX" - !!omap - id: "ENSG00000121207" + - name: "LRAT" - !!omap - id: "ENSG00000121270" + - name: "ABCC11" - !!omap - id: "ENSG00000121281" + - name: "ADCY7" - !!omap - id: "ENSG00000121310" + - name: "ECHDC2" - !!omap - id: "ENSG00000121361" + - name: "KCNJ8" - !!omap - id: "ENSG00000121481" + - name: "RNF2" - !!omap - id: "ENSG00000121578" + - name: "B4GALT4" - !!omap - id: "ENSG00000121579" + - name: "NAA50" - !!omap - id: "ENSG00000121691" + - name: "CAT" - !!omap - id: "ENSG00000121769" + - name: "FABP3" - !!omap - id: "ENSG00000121851" + - name: "POLR3GL" - !!omap - id: "ENSG00000121879" + - name: "PIK3CA" - !!omap - id: "ENSG00000121897" + - name: "LIAS" - !!omap - id: "ENSG00000122008" + - name: "POLK" - !!omap - id: "ENSG00000122126" + - name: "OCRL" - !!omap - id: "ENSG00000122194" + - name: "PLG" - !!omap - id: "ENSG00000122254" + - name: "HS3ST2" - !!omap - id: "ENSG00000122257" + - name: "RBBP6" - !!omap - id: "ENSG00000122390" + - name: "NAA60" - !!omap - id: "ENSG00000122642" + - name: "FKBP9" - !!omap - id: "ENSG00000122643" + - name: "NT5C3A" - !!omap - id: "ENSG00000122678" + - name: "POLM" - !!omap - id: "ENSG00000122729" + - name: "ACO1" - !!omap - id: "ENSG00000122787" + - name: "AKR1D1" - !!omap - id: "ENSG00000122824" + - name: "NUDT10" - !!omap - id: "ENSG00000122863" + - name: "CHST3" - !!omap - id: "ENSG00000122884" + - name: "P4HA1" - !!omap - id: "ENSG00000122912" + - name: "SLC25A16" - !!omap - id: "ENSG00000122971" + - name: "ACADS" - !!omap - id: "ENSG00000123124" + - name: "WWP1" - !!omap - id: "ENSG00000123130" + - name: "ACOT9" - !!omap - id: "ENSG00000123213" + - name: "NLN" - !!omap - id: "ENSG00000123360" + - name: "PDE1B" - !!omap - id: "ENSG00000123453" + - name: "SARDH" - !!omap - id: "ENSG00000123454" + - name: "DBH" - !!omap - id: "ENSG00000123505" + - name: "AMD1" - !!omap - id: "ENSG00000123552" + - name: "USP45" - !!omap - id: "ENSG00000123643" + - name: "SLC36A1" - !!omap - id: "ENSG00000123684" + - name: "LPGAT1" - !!omap - id: "ENSG00000123739" + - name: "PLA2G12A" - !!omap - id: "ENSG00000123836" + - name: "PFKFB2" - !!omap - id: "ENSG00000123983" + - name: "ACSL3" - !!omap - id: "ENSG00000123989" + - name: "CHPF" - !!omap - id: "ENSG00000124003" + - name: "MOGAT1" - !!omap - id: "ENSG00000124067" + - name: "SLC12A4" - !!omap - id: "ENSG00000124091" + - name: "GCNT7" - !!omap - id: "ENSG00000124140" + - name: "SLC12A5" - !!omap - id: "ENSG00000124151" + - name: "NCOA3" - !!omap - id: "ENSG00000124155" + - name: "PIGT" - !!omap - id: "ENSG00000124164" + - 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id: "ENSG00000243477" + - name: "NAA80" - !!omap - id: "ENSG00000243480" + - name: "AMY2A" - !!omap - id: "ENSG00000243678" + - name: "NME2" - !!omap - id: "ENSG00000243708" + - name: "PLA2G4B" - !!omap - id: "ENSG00000243955" + - name: "GSTA1" - !!omap - id: "ENSG00000243989" + - name: "ACY1" - !!omap - id: "ENSG00000244038" + - name: "DDOST" - !!omap - id: "ENSG00000244067" + - name: "GSTA2" - !!omap - id: "ENSG00000244122" + - name: "UGT1A7" - !!omap - id: "ENSG00000244474" + - name: "UGT1A4" - !!omap - id: "ENSG00000244486" + - name: "SCARF2" - !!omap - id: "ENSG00000247626" + - name: "MARS2" - !!omap - id: "ENSG00000247746" + - name: "USP51" - !!omap - id: "ENSG00000248098" + - name: "BCKDHA" - !!omap - id: "ENSG00000248144" + - name: "ADH1C" - !!omap - id: "ENSG00000248933" + - name: "USP17L22" - !!omap - id: "ENSG00000249222" + - name: "ATP5MGL" - !!omap - id: "ENSG00000249853" + - name: "HS3ST5" - !!omap - id: "ENSG00000249948" + - name: "GBA3" - !!omap - id: "ENSG00000250565" + - name: "ATP6V1E2" - !!omap - id: "ENSG00000250799" + - name: "PRODH2" - !!omap - id: "ENSG00000251287" + - name: "ALG1L2" - !!omap - id: "ENSG00000253710" + - name: "ALG11" - !!omap - id: "ENSG00000254685" + - name: "FPGT" - !!omap - id: "ENSG00000255072" + - name: "PIGY" - !!omap - id: "ENSG00000255974" + - name: "CYP2A6" - !!omap - id: "ENSG00000256043" + - name: "CTSO" - !!omap - id: "ENSG00000256269" + - name: "HMBS" - !!omap - id: "ENSG00000256525" + - name: "POLG2" - !!omap - id: "ENSG00000256870" + - name: "SLC5A8" - !!omap - id: "ENSG00000257335" + - name: "MGAM" - !!omap - id: "ENSG00000257365" + - name: "FNTB" - !!omap - id: "ENSG00000257594" + - name: "GALNT4" - !!omap - id: "ENSG00000258429" + - name: "PDF" - !!omap - id: "ENSG00000259431" + - name: "THTPA" - !!omap - id: "ENSG00000261052" + - name: "SULT1A3" - !!omap - id: "ENSG00000263353" + - name: "PPIAL4A" - !!omap - id: "ENSG00000263464" + - name: "PPIAL4C" - !!omap - id: "ENSG00000265203" + - name: "RBP3" - !!omap - id: "ENSG00000265491" + - name: "RNF115" - !!omap - id: "ENSG00000266200" + - name: "PNLIPRP2" - !!omap - id: "ENSG00000267855" + - name: "NDUFA7" - !!omap - id: "ENSG00000268104" + - name: "SLC6A14" - !!omap - id: "ENSG00000271567" + - name: "PPIAL4E" - !!omap - id: "ENSG00000272325" + - name: "NUDT3" - !!omap - id: "ENSG00000272333" + - name: "KMT2B" - !!omap - id: "ENSG00000273820" + - name: "USP27X" - !!omap - id: "ENSG00000273841" + - name: "TAF9" - !!omap - id: "ENSG00000274252" + - name: "GGTLC3" - !!omap - id: "ENSG00000274588" + - name: "DGKK" - !!omap - id: "ENSG00000276043" + - name: "UHRF1" - !!omap - id: "ENSG00000276293" + - name: "PIP4K2B" - !!omap - id: "ENSG00000276747" + - name: "PADI6" - !!omap - id: "ENSG00000277161" + - name: "PIGW" - !!omap - id: "ENSG00000277494" + - name: "GPIHBP1" - !!omap - id: "ENSG00000277893" + - name: "SRD5A2" - !!omap - id: "ENSG00000278540" + - name: "ACACA" - !!omap - id: "ENSG00000281500" + - name: "SLC37A4" - !!omap - id: "ENSG00000288702" + - name: "UGT1A3" - !!omap - id: "ENSG00000288705" + - name: "UGT1A5" - compartments: !!omap - e: "Extracellular" - x: "Peroxisome"