PredictLocalization issue

[DZQ339]

github issue.zip

Description of the issue:

We got a draft model from the ‘getKEGGModelForOrganism’ step, which contains 1841 reactions and 1906 metabolites.
The gene compartments were predicated using deeploc 2.1 and got the GSS score form deeploc file.
When we predicated the localizations using the predictLocalization (predictLocalization (KEGGHomology, GSS, 'Cytoplasm', 0.5, 15, true), the new outmodel contains more than 6735 reactions and 3680 metabolites.
It seems that the predictLocalization step added the transport reaction into all of predicated compartments.

Reproducing this issue:

INSERT CODE HERE

System information

I hereby confirm that I have:

• Checked that a similar issue does not already exist or is already discussed.