antigen.sh

#!/bin/sh
#
# An utility script to remove all generated files.
#
# Running autogen.sh will be required after running this script since
# the 'configure' script will also be removed.
#
# This script is mainly useful when testing autoconf/automake changes
# and as a part of their development process.

# If there's a Makefile, then run the 'distclean' target first (which
# will also remove the Makefile).
if test -f Makefile; then
  make distclean
fi

# Also clean docs
cd doc
if test -f Makefile; then
    make clean
fi
cd ..

# Remove boost
rm -Rf deps/boost/bin.v2 deps/boost/build

# Remove all tar-files (assuming there are some packages), and any expanded directories.
rm -f *.tar.* *.tgz
rm -Rf kat-*/

# Remove the build_aux directory
rm -Rf build-aux

# Also remove the autotools cache directory.
rm -Rf autom4te.cache

# Remove rest of the generated files.
rm -f Makefile.in tests/Makefile.in config.* aclocal.m4 configure depcomp install-sh missing libtool ltmain.sh

# And do the same for jellyfish
cd deps/jellyfish-2.2.0

# Also remove the autotools cache directory.
rm -Rf autom4te.cache

# Remove rest of the generated files.
rm -f Makefile.in config.* aclocal.m4 configure depcomp install-sh missing libtool ltmain.sh compile test-driver

# Move to seqan
cd ../seqan-library-2.0.0

rm -f Makefile.in

# Move back
cd ../../