diff --git a/cli/src/main/kotlin/com/bazel_diff/bazel/BazelClient.kt b/cli/src/main/kotlin/com/bazel_diff/bazel/BazelClient.kt
index d3d9132..5f65c69 100644
--- a/cli/src/main/kotlin/com/bazel_diff/bazel/BazelClient.kt
+++ b/cli/src/main/kotlin/com/bazel_diff/bazel/BazelClient.kt
@@ -2,10 +2,9 @@ package com.bazel_diff.bazel
 
 import com.bazel_diff.log.Logger
 import com.google.devtools.build.lib.query2.proto.proto2api.Build
-import java.nio.file.Path
-import java.util.*
-import org.koin.core.component.inject
 import org.koin.core.component.KoinComponent
+import org.koin.core.component.inject
+import java.util.Calendar
 
 class BazelClient(private val useCquery: Boolean, private val fineGrainedHashExternalRepos: Set<String>) : KoinComponent {
     private val logger: Logger by inject()
diff --git a/cli/src/main/kotlin/com/bazel_diff/bazel/BazelQueryService.kt b/cli/src/main/kotlin/com/bazel_diff/bazel/BazelQueryService.kt
index a66cd3f..f240136 100644
--- a/cli/src/main/kotlin/com/bazel_diff/bazel/BazelQueryService.kt
+++ b/cli/src/main/kotlin/com/bazel_diff/bazel/BazelQueryService.kt
@@ -45,7 +45,7 @@ class BazelQueryService(
         val targets = outputFile.inputStream().buffered().use { proto ->
             if (useCquery) {
                 val cqueryResult = AnalysisProtosV2.CqueryResult.parseFrom(proto)
-                cqueryResult.resultsList.filter { it.target.rule.name in compatibleTargetSet }.map { it.target }
+                cqueryResult.resultsList.filter { inCompatibleTargetSet(it, compatibleTargetSet) }.map { it.target }
             } else {
                 mutableListOf<Build.Target>().apply {
                     while (true) {
@@ -60,6 +60,15 @@ class BazelQueryService(
         return targets
     }
 
+    private fun inCompatibleTargetSet(
+        target: AnalysisProtosV2.ConfiguredTarget,
+        compatibleTargetSet: Set<String>
+    ): Boolean {
+        val name = target.target.rule.name
+        return name in compatibleTargetSet ||
+                name.startsWith("@") && !name.startsWith("@@") && "@${name}" in compatibleTargetSet
+    }
+
     @OptIn(ExperimentalCoroutinesApi::class)
     private suspend fun runQuery(
         query: String,
diff --git a/cli/src/main/kotlin/com/bazel_diff/bazel/BazelRule.kt b/cli/src/main/kotlin/com/bazel_diff/bazel/BazelRule.kt
index 6e0769e..3ef015a 100644
--- a/cli/src/main/kotlin/com/bazel_diff/bazel/BazelRule.kt
+++ b/cli/src/main/kotlin/com/bazel_diff/bazel/BazelRule.kt
@@ -37,11 +37,11 @@ class BazelRule(private val rule: Build.Rule) {
     val name: String = rule.name
 
     private fun transformRuleInput(fineGrainedHashExternalRepos: Set<String>, ruleInput: String): String {
-        if (ruleInput.startsWith("@") && fineGrainedHashExternalRepos.none { ruleInput.startsWith("@$it") }) {
+        if (ruleInput.startsWith("@") && fineGrainedHashExternalRepos.none { ruleInput.startsWith("@$it") || ruleInput.startsWith("@@${it}") }) {
             val splitRule = ruleInput.split("//".toRegex()).dropLastWhile { it.isEmpty() }.toTypedArray()
             if (splitRule.size == 2) {
                 var externalRule = splitRule[0]
-                externalRule = externalRule.replaceFirst("@".toRegex(), "")
+                externalRule = externalRule.replaceFirst("@+".toRegex(), "")
                 return String.format("//external:%s", externalRule)
             }
         }
diff --git a/cli/src/main/kotlin/com/bazel_diff/hash/ExternalRepoResolver.kt b/cli/src/main/kotlin/com/bazel_diff/hash/ExternalRepoResolver.kt
index f500372..9107754 100644
--- a/cli/src/main/kotlin/com/bazel_diff/hash/ExternalRepoResolver.kt
+++ b/cli/src/main/kotlin/com/bazel_diff/hash/ExternalRepoResolver.kt
@@ -67,4 +67,4 @@ class ExternalRepoResolver(
             return it.readLine()
         }
     }
-}
\ No newline at end of file
+}
diff --git a/cli/src/main/kotlin/com/bazel_diff/hash/SourceFileHasher.kt b/cli/src/main/kotlin/com/bazel_diff/hash/SourceFileHasher.kt
index b53af85..e988af7 100644
--- a/cli/src/main/kotlin/com/bazel_diff/hash/SourceFileHasher.kt
+++ b/cli/src/main/kotlin/com/bazel_diff/hash/SourceFileHasher.kt
@@ -48,7 +48,11 @@ class SourceFileHasher : KoinComponent {
                 val filenameSubstring = name.substring(2)
                 Paths.get(filenameSubstring.removePrefix(":").replace(':', '/'))
             } else if (name.startsWith("@")) {
-                val parts = name.substring(1).split("//")
+                val parts = if (name.startsWith("@@")) {
+                    name.substring(2).split("//")
+                } else {
+                    name.substring(1).split("//")
+                }
                 if (parts.size != 2) {
                     logger.w { "Invalid source label $name" }
                     return@sha256