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concordance.txt
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concordance.txt
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||missing|0|0|0|0|
||extra|0|0|0|0|
||position_match_60|1745805|1745893|1745947|1745893|
||position_mismatch_60|396-0.02%|288-0.02%|224-0.01%|281-0.02%|
||position_match_30-59|41047|41227|41229|41214|
||position_mismatch_30-59|727-0.04%|547-0.03%|545-0.03%|560-0.03%|
||position_match_1-29|64025|64469|64462|64507|
||position_mismatch_1-29|1967-0.1%|1523-0.08%|1530-0.08%|1485-0.08%|
||position_match_0|56881|57254|57098|57620|
||position_mismatch_0|118802-0.6%|118428-0.6%|118584-0.6%|118059-0.6%|
||flag0_match_0-60|1907758|1908843|1908696|1909234|
||flag0_mismatch_0-60|0|0|0|0|
||flag1_match_0-60|1901160|1903170|1903054|1903433|
||flag1_mismatch_0-60|6598|5673|5642|5801|
||flag2_match_0-60|1907758|1908843|1908696|1909234|
||flag2_mismatch_0-60|0|0|0|0|
||flag3_match_0-60|1904418|1905518|1905376|1905912|
||flag3_mismatch_0-60|3340|3325|3320|3322|
||flag4_match_0-60|1907757|1908843|1908696|1909233|
||flag4_mismatch_0-60|1|0|0|1|
||flag5_match_0-60|1904037|1905373|1905174|1905683|
||flag5_mismatch_0-60|3721|3470|3522|3551|
||flag6_match_0-60|1907758|1908843|1908696|1909234|
||flag6_mismatch_0-60|0|0|0|0|
||flag7_match_0-60|1907758|1908843|1908696|1909234|
||flag7_mismatch_0-60|0|0|0|0|
||flag8_match_0-60|1907758|1908843|1908696|1909234|
||flag8_mismatch_0-60|0|0|0|0|
||flag9_match_0-60|1907758|1908843|1908696|1909234|
||flag9_mismatch_0-60|0|0|0|0|
||flag10_match_0-60|1907758|1908843|1908696|1909234|
||flag10_mismatch_0-60|0|0|0|0|
||flag11_match_0-60|1907758|1908843|1908696|1909234|
||flag11_mismatch_0-60|0|0|0|0|
||mapq_match_60|1743414|1743417|1743876|1744388|
||mapq_mismatch_60|2391|2476|2071|1505|
||mapq_HW_LT_SW_60|0|0|0|0|
||mapq_HW_GT_SW_60|2391|2476|2071|1505|
||mapqx_match_60|NA|NA|NA|NOT|
||mapqx_mismatch_60|NA|NA|NA|NOT|
||mapq_match_30-59|31402|30718|30791|32991|
||mapq_mismatch_30-59|9645|10509|10438|8223|
||mapq_HW_LT_SW_30-59|7638|6438|7477|6330|
||mapq_HW_GT_SW_30-59|2007|4071|2961|1893|
||mapqx_match_30-59|NA|NA|NA|NOT|
||mapqx_mismatch_30-59|NA|NA|NA|NOT|
||mapq_match_1-29|54280|55051|55138|55980|
||mapq_mismatch_1-29|9745|9418|9324|8527|
||mapq_HW_LT_SW_1-29|7326|7156|7277|6628|
||mapq_HW_GT_SW_1-29|2419|2262|2047|1899|
||mapqx_match_1-29|NA|NA|NA|NOT|
||mapqx_mismatch_1-29|NA|NA|NA|NOT|
||mapq_match_0|52745|52965|52924|53323|
||mapq_mismatch_0|4136|4289|4174|4297|
||mapq_HW_LT_SW_0|4136|4289|4174|4297|
||mapq_HW_GT_SW_0|0|0|0|0|
||mapqx_match_0|NA|NA|NA|NOT|
||mapqx_mismatch_0|NA|NA|NA|NOT|
||cigar_match_60|1745410|1744948|1745628|1745585|
||cigar_mismatch_60|395-0.02%|945-0.05%|319-0.02%|308-0.02%|
||cigar_match_30-59|40988|41145|41189|41172|
||cigar_mismatch_30-59|59-0.003%|82-0.005%|40-0.003%|42-0.003%|
||cigar_match_1-29|63914|64300|64359|64412|
||cigar_mismatch_1-29|111-0.005%|169-0.007%|103-0.005%|95-0.005%|
||cigar_match_0|56773|57052|57000|57525|
||cigar_mismatch_0|108-0.005%|202-0.01%|98-0.005%|95-0.005%|
||tag_XS_match_60|400158|407625|139829|459948|
||tag_XS_mismatch_60|139029|144979|313400|102572|
||tag_RG_match_60|1745805|1745893|1745907|1745893|
||tag_RG_mismatch_60|0|0|0|0|
||tag_AS_match_60|1745520|1745154|1745045|1745696|
||tag_AS_mismatch_60|285|739|862|197|
||tag_XQ_match_60|1515555|1505984|1498344|1522731|
||tag_XQ_mismatch_60|226602|236150|244200|220404|
||tag_NM_match_60|1745515|1745638|1745645|1745694|
||tag_NM_mismatch_60|290|255|262|199|
||tag_XS_match_30-59|39306|38711|38109|36573|
||tag_XS_mismatch_30-59|1559|2337|2887|4013|
||tag_RG_match_30-59|41047|41227|41229|41214|
||tag_RG_mismatch_30-59|0|0|0|0|
||tag_AS_match_30-59|40979|41144|41141|41167|
||tag_AS_mismatch_30-59|68|83|88|47|
||tag_XQ_match_30-59|0|0|0|0|
||tag_XQ_mismatch_30-59|0|0|0|0|
||tag_NM_match_30-59|40982|41181|41183|41171|
||tag_NM_mismatch_30-59|65|46|46|43|
||tag_XS_match_1-29|62760|62650|62295|58403|
||tag_XS_mismatch_1-29|980|1530|1837|5482|
||tag_RG_match_1-29|64025|64469|64462|64507|
||tag_RG_mismatch_1-29|0|0|0|0|
||tag_AS_match_1-29|63887|64294|64273|64393|
||tag_AS_mismatch_1-29|138|175|189|114|
||tag_XQ_match_1-29|0|0|0|0|
||tag_XQ_mismatch_1-29|0|0|0|0|
||tag_NM_match_1-29|63887|64343|64332|64390|
||tag_NM_mismatch_1-29|138|126|130|117|
||tag_XS_match_0|55781|55868|55059|53914|
||tag_XS_mismatch_0|596|876|1219|2071|
||tag_RG_match_0|56881|57254|57098|57620|
||tag_RG_mismatch_0|0|0|0|0|
||tag_AS_match_0|56742|57036|56858|57500|
||tag_AS_mismatch_0|139|218|240|120|
||tag_XQ_match_0|0|0|0|0|
||tag_XQ_mismatch_0|0|0|0|0|
||tag_NM_match_0|56744|57127|56975|57501|
||tag_NM_mismatch_0|137|127|123|119|
||tag_XQ_extra|6477|5777|18982|1344|
||tag_XS_extra|89078|99344|6394|5879|
||tag_SA_missing_|1477|1541|1540|1504|
||tag_XQ_missing_|2393|2502|2106|1559|
||tag_XS_missing_|92062|78699|178510|70704|