nf-config uses install libdir variable #99
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### | |
# Build hdf4, hdf5 dependencies and cache them in a combined directory. | |
### | |
name: Run netCDF-Fortran Linux tests | |
on: [pull_request, workflow_dispatch] | |
concurrency: | |
group: ${{ github.workflow}}-${{ github.head_ref }} | |
cancel-in-progress: true | |
jobs: | |
build-deps: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
hdf5: [ 1.12.2 ] | |
netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Install System dependencies | |
shell: bash -l {0} | |
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev gfortran | |
### | |
# Set Environmental Variables | |
### | |
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
### | |
# Installing libhdf4 and libhdf5 | |
### | |
- name: Cache libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
id: cache-hdf5 | |
uses: actions/cache@v2 | |
with: | |
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
- name: Build libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
run: | | |
pushd $HOME | |
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
pushd hdf5-${{ matrix.hdf5 }} | |
./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --enable-hl --with-szlib | |
make -j | |
make install -j | |
popd | |
if [[ ${{ matrix.netcdf }} != "main" ]]; then | |
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
pushd netcdf-c | |
autoreconf -if | |
CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
make -j install | |
popd | |
fi | |
popd | |
build-deps-par: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
hdf5: [ 1.12.2 ] | |
netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Install System dependencies | |
shell: bash -l {0} | |
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev gfortran mpich libmpich-dev | |
### | |
# Set Environmental Variables | |
### | |
- run: echo "CC=mpicc" >> $GITHUB_ENV | |
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
### | |
# Installing libhdf4 and libhdf5 | |
### | |
- name: Cache libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-par | |
id: cache-hdf5-par | |
uses: actions/cache@v2 | |
with: | |
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-par | |
- name: Build libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-par | |
if: steps.cache-hdf5-par.outputs.cache-hit != 'true' | |
run: | | |
pushd $HOME | |
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 &> /dev/null | |
tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
pushd hdf5-${{ matrix.hdf5 }} | |
./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --enable-hl --with-szlib --enable-parallel | |
make -j | |
make install -j | |
popd | |
if [[ ${{ matrix.netcdf }} != "main" ]]; then | |
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
pushd netcdf-c | |
autoreconf -if | |
CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
make -j install | |
popd | |
fi | |
popd | |
nf-autotools: | |
needs: build-deps | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
hdf5: [ 1.12.2 ] | |
netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Install System dependencies | |
shell: bash -l {0} | |
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev libzstd-dev | |
### | |
# Set Environmental Variables | |
### | |
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "HDF5_PLUGIN_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "HDF5_PLUGIN_DIR=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
### | |
# Fetch Cache | |
### | |
- name: Fetch HDF Cache | |
id: cache-hdf | |
uses: actions/cache@v2 | |
with: | |
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
- name: Check Cache | |
shell: bash -l {0} | |
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf}}/lib | |
### | |
# Configure and build | |
### | |
- name: Build netcdf-c if main | |
run: | | |
pushd $HOME | |
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
pushd netcdf-c | |
autoreconf -if | |
CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --with-plugin-dir=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib | |
make -j install | |
popd | |
popd | |
if: ${{ matrix.netcdf }} == "main" | |
- name: Run autoconf | |
shell: bash -l {0} | |
run: autoreconf -if | |
- name: Configure | |
shell: bash -l {0} | |
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure | |
- name: Look at config.log if error | |
shell: bash -l {0} | |
run: cat config.log | |
if: ${{ failure() }} | |
- name: Print Summary | |
shell: bash -l {0} | |
run: cat libnetcdff.settings | |
- name: Build Library and Utilities | |
shell: bash -l {0} | |
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j | |
if: ${{ success() }} | |
- name: Build Tests | |
shell: bash -l {0} | |
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j | |
if: ${{ success() }} | |
- name: Run Tests | |
shell: bash -l {0} | |
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j | |
if: ${{ success() }} | |
#- name: Make Distcheck | |
# shell: bash -l {0} | |
# run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make distcheck -j | |
nf-autotools-par: | |
needs: build-deps-par | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
hdf5: [ 1.12.2 ] | |
netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Install System dependencies | |
shell: bash -l {0} | |
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev libzstd-dev | |
### | |
# Set Environmental Variables | |
### | |
- run: echo "CC=mpicc" >> $GITHUB_ENV | |
- run: echo "FC=mpifort" >> $GITHUB_ENV | |
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "HDF5_PLUGIN_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "HDF5_PLUGIN_DIR=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
### | |
# Fetch Cache | |
### | |
- name: Fetch HDF Cache | |
id: cache-hdf-par | |
uses: actions/cache@v2 | |
with: | |
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-par | |
- name: Check Cache | |
shell: bash -l {0} | |
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf}}/lib | |
### | |
# Configure and build | |
### | |
- name: Build netcdf-c if main | |
run: | | |
pushd $HOME | |
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
pushd netcdf-c | |
autoreconf -if | |
CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --with-plugin-dir=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib | |
make -j install | |
popd | |
popd | |
if: ${{ matrix.netcdf }} == "main" | |
- name: Run autoconf | |
shell: bash -l {0} | |
run: autoreconf -if | |
- name: Configure | |
shell: bash -l {0} | |
run: CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --enable-parallel-tests | |
- name: Look at config.log if error | |
shell: bash -l {0} | |
run: cat config.log | |
if: ${{ failure() }} | |
- name: Print Summary | |
shell: bash -l {0} | |
run: cat libnetcdff.settings | |
- name: Build Library and Utilities | |
shell: bash -l {0} | |
run: CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j | |
if: ${{ success() }} | |
- name: Build Tests | |
shell: bash -l {0} | |
run: CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j | |
if: ${{ success() }} | |
- name: Run Tests | |
shell: bash -l {0} | |
run: CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j | |
if: ${{ success() }} | |
#- name: Make Distcheck | |
# shell: bash -l {0} | |
# run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make distcheck -j | |
nf-cmake: | |
needs: build-deps | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
hdf5: [ 1.12.2 ] | |
netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Install System dependencies | |
shell: bash -l {0} | |
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev libzstd-dev | |
### | |
# Set Environmental Variables | |
### | |
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf}}" >> $GITHUB_ENV | |
- run: echo "HDF5_PLUGIN_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
- run: echo "HDF5_PLUGIN_DIR=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
### | |
# Fetch Cache | |
### | |
- name: Fetch HDF Cache | |
id: cache-hdf5 | |
uses: actions/cache@v2 | |
with: | |
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
- name: Check Cache | |
shell: bash -l {0} | |
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{matrix.netcdf}}/lib | |
### | |
# Configure and build | |
### | |
- name: Build netcdf-c if main | |
run: | | |
pushd $HOME | |
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
pushd netcdf-c | |
autoreconf -if | |
CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --with-plugin-dir=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib | |
make -j install | |
popd | |
popd | |
if: ${{ matrix.netcdf }} == "main" | |
- name: Perform out-of-directory build | |
shell: bash -l {0} | |
run: | | |
mkdir build | |
cd build | |
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} | |
- name: Print Summary | |
shell: bash -l {0} | |
run: | | |
cd build | |
cat libnetcdff.settings | |
- name: Build All | |
shell: bash -l {0} | |
run: | | |
cd build | |
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12 | |
if: ${{ success() }} | |
- name: Run Tests | |
shell: bash -l {0} | |
run: | | |
cd build | |
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 1 . | |
if: ${{ success() }} | |
- name: Look at LastTest.log if error | |
shell: bash -l {0} | |
run: | | |
cat /home/runner/work/netcdf-fortran/netcdf-fortran/build/Testing/Temporary/LastTest.log | |
cd build | |
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --rerun-failed --output-on-failure | |
if: ${{ failure() }} |