diff --git a/R/CIDR.R b/R/CIDR.R index b8805e3..69f923d 100644 --- a/R/CIDR.R +++ b/R/CIDR.R @@ -140,8 +140,7 @@ setGeneric("determineDropoutCandidates", function(object, min1=3, min2=8, N=2000 #' is a dropout candidate, otherwise the value is \code{false}. #' #' @param object the scData class object -#' @param min1 technical parameter used in estimating the minimum point between the first two modes of the density curve of logTPM for each cell -#' @param min2 technical parameter used in estimating the minimum point between the first two modes of the density curve of logTPM for each cell +#' @param min1,min2 technical parameters used in estimating the minimum point between the first two modes of the density curve of logTPM for each cell #' @param alpha a cutoff quantile in the range [0,1]. Thresholds outside this will be adjusted to the quantile boundary. #' @param N number of cells to consider when determining the threshold value for dropout candidates; used in conjunction with the \code{fast} parameter #' @param fast boolean; if \code{TRUE} (default), implements a fast version for datasets with a sample size greater than N diff --git a/man/determineDropoutCandidates.Rd b/man/determineDropoutCandidates.Rd index 021b648..d8ddd90 100644 --- a/man/determineDropoutCandidates.Rd +++ b/man/determineDropoutCandidates.Rd @@ -11,9 +11,7 @@ \arguments{ \item{object}{the scData class object} -\item{min1}{technical parameter used in estimating the minimum point between the first two modes of the density curve of logTPM for each cell} - -\item{min2}{technical parameter used in estimating the minimum point between the first two modes of the density curve of logTPM for each cell} +\item{min1, min2}{technical parameters used in estimating the minimum point between the first two modes of the density curve of logTPM for each cell} \item{N}{number of cells to consider when determining the threshold value for dropout candidates; used in conjunction with the \code{fast} parameter}