--repeatName

[ghost]

(1) If detecting genomic unknown repeats，
How to write -repeatName parameters；
(2) /reference_sts/hg19/hg19.predefined.pa
The .pa file contains part of the disease repeat area
(3) Detect new disease-unknown repeat regions,
--Patternfile How is the file format

Such as complex neurological diseases,
the repeat gene region is unknown

[liuqianhn]

@huangrongbioinfomation -repeatName could you any name you like but better without special characters.

You can add other disease repeat pattern in /reference_sts/hg19/hg19.predefined.pa

--Patternfile could be .fa or .bed file.

To run RepeatHMM, you need know repeat region and patterns.

[ghost]

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