Troubleshooting Mode may not always be accurate because of rewrite rules

[Clorith]

When in Troubleshooting Mode, all plugins are disabled for your user, but they may already have done their damage.

Permalinks are a vital part to how many things function, for example how plugins catch page visits.

This became obvious with a WooCommerce category page, where a plugin had modified the rewrite rules and made products no longer appear.

Introducing a few new filters here to regenerate rewrite rules for your user in a separate split off database entry sounds like a good plan, and regenerating them on plugin enabling/disabling in this mode only for you. We of course want to maintain our efforts in not affecting regular site visitors, but this will greatly enhance the troubleshooting endeavors.

[Clorith]

Removed milestone for now, this is quite complex and needs some tinkering and thinking to not really mess things up I suspect :)