test.py

# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
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"Test for connectivity pattern analysis"

from cpa import *


targ_img_file = './data/S0001_obj_004.nii.gz'
node_img_file = './data/face.nii.gz'
label_img_file = None
cond_file = './data/design.mat'


# define dataset
ds = DataSet(ftarg_img = targ_img_file, fnode_img = node_img_file, flabel_img=node_img_file, level='voxel')

# define and compute connectivity
conn = Connectivity(ds, metric='pearson').compute()

# define and compute global measures
# glob_meas = Measure(conn, metric='sum').compute()
# glob_meas.save()


# define and compute local measures
# local_meas = LocalMeasure(conn, radius=6, metric='sum').compute()
# local_meas.save()


# define and compute spatial measures
spat_meas = SpatialMeasure(conn).compute()
spat_meas.save()