Discussions

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  scaffold gaps "NNNNNNNN"

  INFINITY1993 asked Mar 8, 2022 in Q&A · Answered

  

  

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  metaplasmidspades & biosyntheticspades in spades.py

  INFINITY1993 asked Mar 7, 2022 in Q&A · Unanswered

  

  

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  Contig coverage after rnaSPAdes

  poecile-palustris asked Mar 4, 2022 in Q&A · Answered

  

  

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  Error IOError: [Errno 13] Permission denied:

  log Errors explained in the log file io Input / output (e.g. due to disk storage) errors

  pedrogribeiro asked Mar 3, 2022 in Q&A · Unanswered

  

  

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  rnaSPAdes hybrid assembly with YAML file

  poecile-palustris asked Feb 27, 2022 in Q&A · Answered

  

  

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  How to cross-reference scaffolds/contigs with files in .gfa and .fastg?

  jolespin asked Feb 27, 2022 in Q&A · Unanswered

  

  

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  Error running rna-Spades

  not a bug Not a bug

  d-kk asked Feb 24, 2022 in Q&A · Unanswered

  

  

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  CoronaSpades - lacking documentation

  DarrenObbard asked Feb 24, 2022 in Q&A · Answered

  

  

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  HybridSPAdes - On which stage of the pipeline are the graph outputs generated?

  nettanetta asked Feb 23, 2022 in Q&A · Unanswered

  

  

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  Read orientation

  Jediworm asked Feb 14, 2022 in Q&A · Unanswered

  

  

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  Error code 28

  stephen-14 asked Feb 10, 2022 in Q&A · Answered

  

  

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  Handle trusted circular contigs

  fplazaonate asked Feb 3, 2022 in Q&A · Unanswered

  

  

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  spades.py --test ends with error: suggestions?

  jieunii87 asked Jan 27, 2022 in Q&A · Unanswered

  

  

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  Merging PE-reads and basics on spades

  aupadhaya asked Jan 15, 2022 in Q&A · Unanswered

  

  

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  arm/aarch64 version of SPAdes

  Bicyclecardcn asked Jan 8, 2022 in Q&A · Unanswered

  

  

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  Will the rnaspades.py filter short reads?

  Duannai asked Dec 27, 2021 in Q&A · Unanswered

  

  

  

  

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  Will metaspades.py or rnaspades.py will provide redundant contigs?

  SarahIsme asked Jan 5, 2022 in Q&A · Answered

  

  

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  Spades for larger genomes

  eleniadam asked Dec 28, 2021 in Q&A · Unanswered

  

  

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  How to make hybrid assembly of a viral genome

  sekhwal asked Dec 16, 2021 in Q&A · Unanswered

  

  

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  gaps in hybrid RNA-seq assembly

  glopatriello asked Oct 19, 2021 in Q&A · Unanswered

  

  

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  How to input unpaired data after error correction?

  1996xjm asked Oct 23, 2021 in Q&A · Answered

  

  

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  Can Spades be used for de novo assembly of RAD-seq Illumina reads?

  Anto007 asked Oct 13, 2021 in Q&A · Unanswered

  

  

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  Can Spades take only contigs?

  ardy20 asked Oct 18, 2021 in Q&A · Answered

  

  

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  number of Illumina reads for transcriptome assembly

  glopatriello asked Oct 6, 2021 in Q&A · Answered

  

  

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  Optimal strategy for hybrid (Illumina + ONT) assembly

  MaestSi asked Aug 26, 2021 in Q&A · Answered

  

  

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