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Refactoring for GTR optimisation
rustfmt and clippy with annotations #41: Commit 18cc8b8 pushed by junniest
January 10, 2024 12:45 1m 11s subst_model_parameter_optimisation
January 10, 2024 12:45 1m 11s
Fixed bug for incorrect likelihood
rustfmt and clippy with annotations #40: Commit 349d823 pushed by junniest
January 10, 2024 11:06 50s subst_model_parameter_optimisation
January 10, 2024 11:06 50s
Using parameter struct for models instead of vec
rustfmt and clippy with annotations #39: Commit 5fa5f4b pushed by junniest
December 21, 2023 15:10 52s subst_model_parameter_optimisation
December 21, 2023 15:10 52s
Initial optim of GTR
rustfmt and clippy with annotations #38: Commit 47c6371 pushed by junniest
December 21, 2023 13:35 50s subst_model_parameter_optimisation
December 21, 2023 13:35 50s
Coverage workflow runs on main and devel pushes
rustfmt and clippy with annotations #37: Commit 5580a60 pushed by junniest
December 12, 2023 10:19 52s main
December 12, 2023 10:19 52s
Multiple changes to interior order of operations (#9)
rustfmt and clippy with annotations #36: Commit d97a641 pushed by junniest
December 12, 2023 10:12 1m 13s main
December 12, 2023 10:12 1m 13s
Multiple changes to interior order of operations
rustfmt and clippy with annotations #35: Commit 7f5e807 pushed by jarcev
December 7, 2023 14:53 52s likelihood_calc_streamline
December 7, 2023 14:53 52s
PhyloInfo returns char counts
rustfmt and clippy with annotations #34: Commit c4755e4 pushed by junniest
December 6, 2023 18:20 53s subst_model_parameter_optimisation
December 6, 2023 18:20 53s
Added HashMap representing DNA ambig chars
rustfmt and clippy with annotations #33: Commit ee31c1d pushed by junniest
December 5, 2023 10:16 57s subst_model_parameter_optimisation
December 5, 2023 10:16 57s
Indelmap compatibility fix (#8)
rustfmt and clippy with annotations #32: Commit 0d7bc92 pushed by jarcev
December 4, 2023 09:32 50s likelihood_calc_streamline
December 4, 2023 09:32 50s
Refactored gtr to separate module.
rustfmt and clippy with annotations #31: Commit e455a67 pushed by junniest
November 30, 2023 14:44 55s subst_model_parameter_optimisation
November 30, 2023 14:44 55s
DNA model creation partial refactor
rustfmt and clippy with annotations #30: Commit 49ee12b pushed by junniest
November 30, 2023 14:25 52s subst_model_parameter_optimisation
November 30, 2023 14:25 52s
Fixed filename typo in K80 param optim tests
rustfmt and clippy with annotations #29: Commit 6d7e3d6 pushed by junniest
November 30, 2023 13:44 55s subst_model_parameter_optimisation
November 30, 2023 13:44 55s
K80 model parameter optimiser using brent
rustfmt and clippy with annotations #28: Commit a94203d pushed by junniest
November 30, 2023 13:33 1m 8s subst_model_parameter_optimisation
November 30, 2023 13:33 1m 8s
Update likelihood calculation to use external tmp
rustfmt and clippy with annotations #27: Commit c3f356d pushed by junniest
November 24, 2023 13:26 1m 9s subst_model_parameter_optimisation
November 24, 2023 13:26 1m 9s
Overhaul for DNA model creation
rustfmt and clippy with annotations #26: Commit 77c5786 pushed by junniest
November 24, 2023 12:13 57s subst_model_parameter_optimisation
November 24, 2023 12:13 57s
Indelmap compatibility fix (#8)
rustfmt and clippy with annotations #25: Commit 0d7bc92 pushed by junniest
November 21, 2023 12:59 57s develop
November 21, 2023 12:59 57s
Indelmap compatibility fix (#8)
rustfmt and clippy with annotations #24: Commit 0d7bc92 pushed by junniest
November 16, 2023 19:28 49s main
November 16, 2023 19:28 49s
PhyloInfo sequences should be pub
rustfmt and clippy with annotations #23: Commit 6bb52f7 pushed by junniest
November 16, 2023 19:24 53s indelmap_compatibility_fix
November 16, 2023 19:24 53s
Test get_idx_by_id and fix panic when not found
rustfmt and clippy with annotations #22: Commit a8db4b0 pushed by junniest
November 16, 2023 19:22 57s indelmap_compatibility_fix
November 16, 2023 19:22 57s
Added test for Tree::new with no sequences
rustfmt and clippy with annotations #21: Commit 42e6983 pushed by junniest
November 16, 2023 19:07 54s indelmap_compatibility_fix
November 16, 2023 19:07 54s
Added test to call ParsimonyModel methods for DNA
rustfmt and clippy with annotations #20: Commit 314ea09 pushed by junniest
November 16, 2023 18:57 1m 1s indelmap_compatibility_fix
November 16, 2023 18:57 1m 1s
Removed extra whitespace to please fmt
rustfmt and clippy with annotations #19: Commit 889dfa1 pushed by junniest
November 16, 2023 17:12 55s indelmap_compatibility_fix
November 16, 2023 17:12 55s
Tests for phyloInfo phyloinfo_from_sequences_tree
rustfmt and clippy with annotations #18: Commit 8e0447e pushed by junniest
November 16, 2023 17:09 52s indelmap_compatibility_fix
November 16, 2023 17:09 52s
Test for phyloinfor from sequences and newick
rustfmt and clippy with annotations #17: Commit 478ef0b pushed by junniest
November 16, 2023 16:50 55s indelmap_compatibility_fix
November 16, 2023 16:50 55s