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Makefile
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Makefile
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.DEFAULT_GOAL := pypitest
install:
python -m \
pip \
install \
git+https://github.com/afrendeiro/toolkit.git#egg=ngs-toolkit \
--user
test:
python -m \
pytest -n 3 \
--disable-warnings \
--show-capture=no \
--cov=ngs_toolkit \
--lf \
--cov-report xml \
ngs_toolkit/tests/test_*.py
test_cov:
python -m \
pytest \
--testmon \
--disable-warnings \
--show-capture=no \
ngs_toolkit/tests/test_*.py
coverage: test
python -m codecov \
-f coverage.xml
python -m codacy \
-r coverage.xml
docs:
cd docs && $(MAKE) html
xdg-open docs/build/html/index.html
build: test
python setup.py sdist bdist_wheel
pypitest: build
twine \
upload \
-r pypitest dist/*
pypi: build
twine \
upload \
dist/*
gh:
docker \
build \
-t ngs-toolkit \
.
docker \
tag \
ngs-toolkit \
docker.pkg.github.com/afrendeiro/toolkit/ngs-toolkit:latest
docker \
push \
docker.pkg.github.com/afrendeiro/toolkit/ngs-toolkit:latest
gh-release: install
$(eval VERSION := \
$(shell \
python3 \
-c 'from ngs_toolkit import __version__ as v; print(v)'))
docker \
build \
-t ngs-toolkit:$(VERSION) \
.
docker \
tag \
ngs-toolkit \
docker.pkg.github.com/afrendeiro/toolkit/ngs-toolkit:$(VERSION)
docker \
push \
docker.pkg.github.com/afrendeiro/toolkit/ngs-toolkit:$(VERSION)
clean_pyc:
find . -name \*.pyc -delete
clean_mypy:
rm -rf .mypy_cache/
clean_test:
rm -rf .pytest_cache/
rm -rf /tmp/pytest*
find . -name "__pycache__" -exec rm -rf {} \;
rm -rf .coverage*
rm -rf .tox/
clean_cov: clean_test
rm -fr coverage.xml htmlcov
clean_docs:
rm -fr docs/build/
clean_dist:
rm -fr dist/
clean_build:
rm -fr build/
rm -rf ngs_toolkit/_version.py
clean_eggs:
rm -fr ngs_toolkit.egg-info
rm -fr .eggs
clean: \
clean_pyc \
clean_mypy \
clean_test \
clean_cov \
clean_docs \
clean_dist \
clean_build \
clean_eggs
all: \
test \
coverage \
docs \
build \
pypitest \
pypi \
clean
.PHONY: \
test \
coverage \
docs \
build \
pypitest \
pypi \
clean_pyc \
clean_mypy \
clean_test \
clean_cov \
clean_docs \
clean_dist \
clean_build \
clean_eggs \
clean