{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":429290367,"defaultBranch":"main","name":"TNBC_python_scripts","ownerLogin":"angelolab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-11-18T04:01:22.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/56707780?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1724986823.0","currentOid":""},"activityList":{"items":[{"before":"3b50d3480468fdca48c24386c59463989e23e33d","after":"2a9036ec5be5da30ad0865997ee2147bb2399bc8","ref":"refs/heads/occupancy_stats","pushedAt":"2024-09-04T22:14:37.000Z","pushType":"push","commitsCount":40,"pusher":{"login":"alex-l-kong","name":null,"path":"/alex-l-kong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31424707?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/angelolab/TNBC_python_scripts into occupancy_stats","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/angelolab/TNBC_python_scripts…"}},{"before":"9128e2c5bd07896176302d0efe40e58b234a12b9","after":"3b50d3480468fdca48c24386c59463989e23e33d","ref":"refs/heads/occupancy_stats","pushedAt":"2024-09-04T20:56:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alex-l-kong","name":null,"path":"/alex-l-kong","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31424707?s=80&v=4"},"commit":{"message":"Integrate occupancy stat generation into DF per core","shortMessageHtmlLink":"Integrate occupancy stat generation into DF per core"}},{"before":"d507b02b142dbe060b215446eaf8ce82abe580b8","after":null,"ref":"refs/heads/supp_table_fix","pushedAt":"2024-08-30T03:00:23.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"}},{"before":"fdd0ad992d1dd098752877ab166e35c63660b05c","after":"f1e89ce12639a4bbb752898fbdcdaba24444221b","ref":"refs/heads/main","pushedAt":"2024-08-30T03:00:22.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"fix timepoint names (#73)","shortMessageHtmlLink":"fix timepoint names (#73)"}},{"before":null,"after":"d507b02b142dbe060b215446eaf8ce82abe580b8","ref":"refs/heads/supp_table_fix","pushedAt":"2024-08-29T20:45:30.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"camisowers","name":null,"path":"/camisowers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38049893?s=80&v=4"},"commit":{"message":"fix timepoint names","shortMessageHtmlLink":"fix timepoint names"}},{"before":"3b797eb3b5eb01bbae3107cd3dbc0ef213595446","after":null,"ref":"refs/heads/figure_tweaks","pushedAt":"2024-07-24T22:34:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"}},{"before":"5793554ad6eef5151d6fcc4413534454c0042036","after":"fdd0ad992d1dd098752877ab166e35c63660b05c","ref":"refs/heads/main","pushedAt":"2024-07-24T22:34:19.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"Semi-final cleanup (#72)\n\n* rearrange some of the categories\r\n\r\n* more tweaks\r\n\r\n* update path\r\n\r\n* filename\r\n\r\n* new supplementary table\r\n\r\n* tweak path\r\n\r\n* changed to yellow\r\n\r\n* yellow in figure 2\r\n\r\n* add code for summarizing key metrics in figure\r\n\r\n* switch back to navajowhite\r\n\r\n* new overlays\r\n\r\n* updated FOVs\r\n\r\n* figure 4 updates with new labels\r\n\r\n* figure five new labels\r\n\r\n* update genomics scripts\r\n\r\n* new labels\r\n\r\n* figure 11 new labels\r\n\r\n* update ED 12\r\n\r\n* final tweaks","shortMessageHtmlLink":"Semi-final cleanup (#72)"}},{"before":"a0d29278e7cb8a366263c25c4d8f4ae31d7080bb","after":"3b797eb3b5eb01bbae3107cd3dbc0ef213595446","ref":"refs/heads/figure_tweaks","pushedAt":"2024-07-24T22:34:10.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"Merge branch 'main' into figure_tweaks","shortMessageHtmlLink":"Merge branch 'main' into figure_tweaks"}},{"before":"a07c3f95e6d1d43ef3ed0b530efe5b9cb548b156","after":"a0d29278e7cb8a366263c25c4d8f4ae31d7080bb","ref":"refs/heads/figure_tweaks","pushedAt":"2024-07-24T22:30:55.000Z","pushType":"push","commitsCount":13,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"final tweaks","shortMessageHtmlLink":"final tweaks"}},{"before":"259eeb1466aad15fad5d83be8029740fe4bafec6","after":null,"ref":"refs/heads/readme_updates","pushedAt":"2024-07-24T21:37:00.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"}},{"before":"8d948fdb7ce42f2beaf0691144889bdd306f8587","after":"5793554ad6eef5151d6fcc4413534454c0042036","ref":"refs/heads/main","pushedAt":"2024-07-24T21:36:58.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"Readme updates (#71)\n\n* change kmeans folder name\r\n\r\n* change exclude_features_compartment_correlation.csv folder\r\n\r\n* readme updates\r\n\r\n* tweaks\r\n\r\n* exclude TMA14_R1C1 from figure 1 heatmap\r\n\r\n* Timepoint fix","shortMessageHtmlLink":"Readme updates (#71)"}},{"before":"602ddcf585e319b3ad75c8f54c1c49667e762ee1","after":"259eeb1466aad15fad5d83be8029740fe4bafec6","ref":"refs/heads/readme_updates","pushedAt":"2024-07-22T21:39:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"camisowers","name":null,"path":"/camisowers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38049893?s=80&v=4"},"commit":{"message":"Timepoint fix","shortMessageHtmlLink":"Timepoint fix"}},{"before":"f7c7f5c99208103bec60773651a48bd11d136943","after":"602ddcf585e319b3ad75c8f54c1c49667e762ee1","ref":"refs/heads/readme_updates","pushedAt":"2024-07-22T21:33:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"camisowers","name":null,"path":"/camisowers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38049893?s=80&v=4"},"commit":{"message":"exclude TMA14_R1C1 from figure 1 heatmap","shortMessageHtmlLink":"exclude TMA14_R1C1 from figure 1 heatmap"}},{"before":"f773adaaf3c7f51f7fbebd217a78efd2f950ca35","after":"f7c7f5c99208103bec60773651a48bd11d136943","ref":"refs/heads/readme_updates","pushedAt":"2024-07-22T17:48:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"camisowers","name":null,"path":"/camisowers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38049893?s=80&v=4"},"commit":{"message":"tweaks","shortMessageHtmlLink":"tweaks"}},{"before":null,"after":"f773adaaf3c7f51f7fbebd217a78efd2f950ca35","ref":"refs/heads/readme_updates","pushedAt":"2024-07-18T17:57:50.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"camisowers","name":null,"path":"/camisowers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38049893?s=80&v=4"},"commit":{"message":"readme updates","shortMessageHtmlLink":"readme updates"}},{"before":null,"after":"a07c3f95e6d1d43ef3ed0b530efe5b9cb548b156","ref":"refs/heads/figure_tweaks","pushedAt":"2024-07-17T19:38:08.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"Merge branch 'main' into figure_tweaks","shortMessageHtmlLink":"Merge branch 'main' into figure_tweaks"}},{"before":"14776fc3c3c930b79e4f28e5709bbd31840618ad","after":null,"ref":"refs/heads/add_fdr/remove_localization","pushedAt":"2024-07-17T19:37:41.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"}},{"before":"db1f77bbb3af5e1479d2e35cb5099e35a5204b65","after":"8d948fdb7ce42f2beaf0691144889bdd306f8587","ref":"refs/heads/main","pushedAt":"2024-07-17T19:37:40.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"Switch to FDR p-value and remove Localization (#70)\n\n* Remove Localization column from the pipeline\r\n\r\n* switch to FDR p-value\r\n\r\n* Localization removal from supp figure 6 and Readme.md","shortMessageHtmlLink":"Switch to FDR p-value and remove Localization (#70)"}},{"before":"d7cc4f5815e238a24e6ba200aa5e754f9da1df40","after":"14776fc3c3c930b79e4f28e5709bbd31840618ad","ref":"refs/heads/add_fdr/remove_localization","pushedAt":"2024-07-17T18:13:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"camisowers","name":null,"path":"/camisowers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38049893?s=80&v=4"},"commit":{"message":"Localization removal from supp figure 6 and Readme.md","shortMessageHtmlLink":"Localization removal from supp figure 6 and Readme.md"}},{"before":"8f642db9a927b35acbeb5efe016bc4871eaa4946","after":"d7cc4f5815e238a24e6ba200aa5e754f9da1df40","ref":"refs/heads/add_fdr/remove_localization","pushedAt":"2024-07-17T16:53:21.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"camisowers","name":null,"path":"/camisowers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38049893?s=80&v=4"},"commit":{"message":"Merge branch 'main' into add_fdr/remove_localization","shortMessageHtmlLink":"Merge branch 'main' into add_fdr/remove_localization"}},{"before":null,"after":"8f642db9a927b35acbeb5efe016bc4871eaa4946","ref":"refs/heads/add_fdr/remove_localization","pushedAt":"2024-07-17T16:49:44.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"camisowers","name":null,"path":"/camisowers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38049893?s=80&v=4"},"commit":{"message":"switch to FDR p-value","shortMessageHtmlLink":"switch to FDR p-value"}},{"before":"4a4964b1bb1fefdc5ea5540211d3a6390462a19d","after":null,"ref":"refs/heads/avg_cell_counts_by_timepoint","pushedAt":"2024-07-16T23:35:40.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"}},{"before":"9bd7c11926acd1dc94afd91117a8cac3a1c29e89","after":"db1f77bbb3af5e1479d2e35cb5099e35a5204b65","ref":"refs/heads/main","pushedAt":"2024-07-16T23:35:38.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"Average cell counts per timepoint plots (#69)\n\n* plots\r\n\r\n* read in cell table each time","shortMessageHtmlLink":"Average cell counts per timepoint plots (#69)"}},{"before":"9a24b4ea89ed6ac1770fe1851ff278e67bb8936d","after":"4a4964b1bb1fefdc5ea5540211d3a6390462a19d","ref":"refs/heads/avg_cell_counts_by_timepoint","pushedAt":"2024-07-16T20:49:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"camisowers","name":null,"path":"/camisowers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38049893?s=80&v=4"},"commit":{"message":"read in cell table each time","shortMessageHtmlLink":"read in cell table each time"}},{"before":null,"after":"9a24b4ea89ed6ac1770fe1851ff278e67bb8936d","ref":"refs/heads/avg_cell_counts_by_timepoint","pushedAt":"2024-07-16T19:47:33.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"camisowers","name":null,"path":"/camisowers","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38049893?s=80&v=4"},"commit":{"message":"plots","shortMessageHtmlLink":"plots"}},{"before":"750881a2d203560b0fbc5aff6fdc7ab989524699","after":null,"ref":"refs/heads/figure_tweaks","pushedAt":"2024-07-15T16:03:35.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"}},{"before":"cb1fc860a25b662f102b4cc14b980861c16ee8e8","after":"9bd7c11926acd1dc94afd91117a8cac3a1c29e89","ref":"refs/heads/main","pushedAt":"2024-07-15T16:03:33.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"Figure tweaks (#68)\n\n* rearrange some of the categories\r\n\r\n* more tweaks\r\n\r\n* update path\r\n\r\n* filename","shortMessageHtmlLink":"Figure tweaks (#68)"}},{"before":"dcb7c746ac029a9511b6568744a061f62bd4024c","after":"750881a2d203560b0fbc5aff6fdc7ab989524699","ref":"refs/heads/figure_tweaks","pushedAt":"2024-07-15T16:02:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"filename","shortMessageHtmlLink":"filename"}},{"before":null,"after":"dcb7c746ac029a9511b6568744a061f62bd4024c","ref":"refs/heads/figure_tweaks","pushedAt":"2024-07-15T16:01:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"},"commit":{"message":"update path","shortMessageHtmlLink":"update path"}},{"before":"6e6dbb3d94077fb457b1d24c06f735b02febd376","after":null,"ref":"refs/heads/immune_agg/clinical_benefit","pushedAt":"2024-07-13T16:14:10.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ngreenwald","name":"Noah F. Greenwald","path":"/ngreenwald","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13770365?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNFQyMjoxNDozNy4wMDAwMDBazwAAAAStNRva","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNFQyMjoxNDozNy4wMDAwMDBazwAAAAStNRva","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNy0xM1QxNjoxNDoxMC4wMDAwMDBazwAAAAR-nfT3"}},"title":"Activity · angelolab/TNBC_python_scripts"}