diff --git a/doc/changes/10935.md b/doc/changes/10935.md
new file mode 100644
index 00000000000..d6b1a2bf0f8
--- /dev/null
+++ b/doc/changes/10935.md
@@ -0,0 +1 @@
+- Forward the linkall flag to jsoo in whole program compilation as well (#10935, @hhugo)
\ No newline at end of file
diff --git a/src/dune_rules/jsoo/jsoo_rules.ml b/src/dune_rules/jsoo/jsoo_rules.ml
index 52f7941c75f..148479f7c78 100644
--- a/src/dune_rules/jsoo/jsoo_rules.ml
+++ b/src/dune_rules/jsoo/jsoo_rules.ml
@@ -291,10 +291,25 @@ let standalone_runtime_rule cc ~javascript_files ~target ~flags =
     ~config:(Some config)
 ;;
 
-let exe_rule cc ~javascript_files ~src ~target ~flags =
+let exe_rule cc ~linkall ~javascript_files ~src ~target ~flags =
   let dir = Compilation_context.dir cc in
   let sctx = Compilation_context.super_context cc in
   let libs = Compilation_context.requires_link cc in
+  let linkall =
+    let open Action_builder.O in
+    let+ linkall = linkall
+    and+ jsoo_version =
+      let* jsoo = jsoo ~dir sctx in
+      Action_builder.of_memo @@ Version.jsoo_version jsoo
+    in
+    Command.Args.As
+      (match jsoo_version, linkall with
+       | Some version, true ->
+         (match Version.compare version (5, 1) with
+          | Lt -> []
+          | Gt | Eq -> [ "--linkall" ])
+       | None, _ | _, false -> [])
+  in
   let spec =
     Command.Args.S
       [ Resolve.Memo.args
@@ -303,6 +318,7 @@ let exe_rule cc ~javascript_files ~src ~target ~flags =
            Command.Args.Deps (jsoo_runtime_files libs))
       ; Deps (List.map ~f:Path.build javascript_files)
       ; Dep (Path.build src)
+      ; Dyn linkall
       ]
   in
   js_of_ocaml_rule sctx ~sub_command:Compile ~dir ~spec ~target ~flags ~config:None
@@ -549,7 +565,7 @@ let build_exe
     in
     ()
   | Whole_program ->
-    exe_rule cc ~javascript_files ~src ~target ~flags ~sourcemap
+    exe_rule cc ~linkall ~javascript_files ~src ~target ~flags ~sourcemap
     |> Super_context.add_rule sctx ~loc ~dir ~mode
 ;;
 
diff --git a/test/blackbox-tests/test-cases/jsoo/inline-tests.t/run.t b/test/blackbox-tests/test-cases/jsoo/inline-tests.t/run.t
index fba35fdc48e..87386212671 100644
--- a/test/blackbox-tests/test-cases/jsoo/inline-tests.t/run.t
+++ b/test/blackbox-tests/test-cases/jsoo/inline-tests.t/run.t
@@ -16,6 +16,7 @@ Run inline tests using node js
   inline tests (JS)
 
   $ dune runtest --profile release
+  Warning: your program contains effect handlers; you should probably run js_of_ocaml with option '--enable=effects'
   inline tests (JS)
   inline tests (JS)
   inline tests (Native)