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[Bug] fix fillna function on a single column fail #32594

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merged 9 commits into from
Oct 9, 2024
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@DKER2 DKER2 commented Sep 30, 2024

fixes #31855
In fillna to expression fuction in here, it add ConstantExpression as args to fillna() if value is constant. This would cause problem in expression to compute stage function as in this line all args will be added as inputs to compute stage. This constant expression will latter be computed by this function, but as it is a constant expression, it do not have any input that will make the program fail. We only should add ComputedExpression and PlaceHolderExpression


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@DKER2 DKER2 changed the title [BUG] fillna function on a single col fail [BUG] fillna function on a single column fail Sep 30, 2024
@DKER2 DKER2 marked this pull request as draft September 30, 2024 03:31
@DKER2 DKER2 changed the title [BUG] fillna function on a single column fail [BUG] fix fillna function on a single column fail Sep 30, 2024
@DKER2 DKER2 marked this pull request as ready for review September 30, 2024 05:46
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@DKER2 DKER2 changed the title [BUG] fix fillna function on a single column fail [Bug] fix fillna function on a single column fail Sep 30, 2024
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Thanks for fixing this bug, @DKER2 . Could you also add a unit test (something the following) in to your PR?

import tempfile

import apache_beam as beam
from apache_beam.dataframe import convert
from apache_beam.testing.util import assert_that
from apache_beam.testing.util import equal_to

with tempfile.NamedTemporaryFile(mode="w") as fp:
  fp.writelines(("col1,col2\n", "1,1\n", "NaN,1\n", "-1,1\n"))
  fp.flush()

  pipeline = beam.Pipeline(None)
  beam_df = pipeline | 'Read CSV' >> beam.dataframe.io.read_csv(fp.name)
  beam_df['col1'] = beam_df['col1'].fillna(0)
  assert_that(
    convert.to_pcollection(beam_df),
    equal_to([(1,1), (0, 1),(-1, 1)]))

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@tvalentyn

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DKER2 commented Sep 30, 2024

Could you please check the name of the test and confirm if the file where I've placed it is correct?

@@ -354,6 +354,16 @@ def test_rename(self):
0: 2, 2: 0
}, errors='raise'))

def test_dataframe_column_fillna_constant_as_value(self):
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I would place it together with other fillna tests:

def test_fillna_columns(self):

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@DKER2 DKER2 Oct 1, 2024

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I have tried to put in that file like this commit , but seem that this function

def expr_to_stages(expr):

is not triggered, the test triggered different flow. And the test pass even with the old version of code.

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Please help to advise

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@shunping shunping Oct 8, 2024

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Sorry for the late reply.

The bug is only triggered in the transform of DeferredDataFrame, so you have to put that in a pipeline so that when the pipeline runs the corresponding transform code path will run.

Could you put a test like the following into frames_test.py?

import numpy as np

import apache_beam as beam
from apache_beam.dataframe import convert
from apache_beam.testing.util import assert_that
from apache_beam.testing.util import equal_to

with beam.Pipeline(None) as p:
  pcoll = (p | beam.Create([1.0, np.nan, -1.0]) | beam.Select(x=lambda x: x))
  df = convert.to_dataframe(pcoll)
  df_new = df['x'].fillna(0)
  assert_that(
    convert.to_pcollection(df_new),
    equal_to([1.0, 0.0, -1.0]))

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Thank you @shunping for your suggestion. That works as well

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github-actions bot commented Oct 8, 2024

Reminder, please take a look at this pr: @shunping

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Could you please add the test? Thanks!

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DKER2 commented Oct 9, 2024

Added Tests

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LGTM

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github-actions bot commented Oct 9, 2024

R: @damccorm for final approval

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Thanks!

@damccorm damccorm merged commit b781b82 into apache:master Oct 9, 2024
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[Bug]: In Beam Dataframe api, the fillna operation doesn't work when applied on individual columns
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