Code repository for the T2T-Y paper
This repository contains custom codes for data anslysis and visualization described in The complete sequence of a human Y chromosome.
- Assembly string graph construction and resoultion: https://github.com/snurk/sg_sandbox
- 1KGP and SGDP short-read variant calling: https://github.com/schatzlab/t2t-chm13-chry
- Resources available for T2T-CHM13v2.0 as a reference: https://github.com/marbl/CHM13
- Known issues in T2T-CHM13v2.0: https://github.com/marbl/CHM13-Issues