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v2.9.0 workflow-controller OOM Killed #3400

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4 tasks done
jjtroberts opened this issue Jul 7, 2020 · 13 comments · Fixed by #3421
Closed
4 tasks done

v2.9.0 workflow-controller OOM Killed #3400

jjtroberts opened this issue Jul 7, 2020 · 13 comments · Fixed by #3421
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@jjtroberts
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jjtroberts commented Jul 7, 2020

Checklist:

  • I've included the version.
  • I've included reproduction steps.
  • I've included the workflow YAML.
  • I've included the logs.

What happened:
We upgraded from v2.4.3 to v2.9.0 and our heaviest process hung due to the workflow-controller consuming all available memory on the node, resulting in the oom killer reaping the pod +200 times. When I attempted to terminate the workflow, argo responded that it had successfully terminated the workflow, but the status would never change. I had to delete the workflow to remove it altogether. There were no running pods in the client namespace at the time.

What you expected to happen:
The workflow-controller should have remained as stable as it had in v2.4.3.

How to reproduce it (as minimally and precisely as possible):
Run the attached workflow with substitute images using argo-server v2.9.0 on
Kubernetes v1.17.2

Server Version: 18.09.2
Storage Driver: overlay2
 Backing Filesystem: xfs
 Supports d_type: true
 Native Overlay Diff: true
Logging Driver: json-file
Cgroup Driver: cgroupfs
Plugins:
 Volume: local
 Network: bridge host macvlan null overlay
 Log: awslogs fluentd gcplogs gelf journald json-file local logentries splunk syslog
Swarm: inactive
Runtimes: runc
Default Runtime: runc
Init Binary: docker-init
containerd version: 7ad184331fa3e55e52b890ea95e65ba581ae3429
runc version: dc9208a3303feef5b3839f4323d9beb36df0a9dd
init version: fec3683
Security Options:
 seccomp
  Profile: default
Kernel Version: 3.10.0-1127.13.1.el7.x86_64
Operating System: CentOS Linux 7 (Core)
OSType: linux
Architecture: x86_64
CPUs: 4
Total Memory: 15.51GiB
Name: hqk-prdcp02
ID: AEKM:R3AY:TYBS:LQ74:S55U:3X2Z:CXSE:A4K4:UPLH:TB4K:37I4:C6X3
Docker Root Dir: /var/lib/docker
Debug Mode (client): false
Debug Mode (server): false
Registry: https://index.docker.io/v1/
Labels:
Experimental: false
Insecure Registries:
 127.0.0.0/8
Live Restore Enabled: false
Product License: Community Engine

Anything else we need to know?:

Environment:

  • Argo version:
v2.9.0
  • Kubernetes version :
v1.17.2

Other debugging information (if applicable):

node_memory

  • workflow-controller stats

workflow_controller_stats

You can see where it ran out of memory last night around 10-10:30PM CST, and was terminated, then cron kicked it off again the next morning and it steadily grew until it consumed all available memory.


Message from the maintainers:

If you are impacted by this bug please add a 👍 reaction to this issue! We often sort issues this way to know what to prioritize.

@alexec alexec self-assigned this Jul 7, 2020
@jjtroberts
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jjtroberts commented Jul 7, 2020

Any chance this is related to a fix in v2.9.1?

"fix: Running pods are garaged in PodGC onSuccess"

#3381

@alexec alexec added this to the v2.9 milestone Jul 7, 2020
@alexec
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alexec commented Jul 7, 2020

@jjtroberts you say v2.9.0 in the description, but v2.9.1 in your message. Can you confirm if you have tested with v2.9.0 and v2.9.1 please?

@jjtroberts
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I saw the fix in v2.9.1 release only after posting this bug and am currently testing that version. The OOM killer occurred in v2.9.0. I'll update once I know more about v2.9.1 results.

@alexec
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alexec commented Jul 7, 2020

Thank you.

@jjtroberts
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jjtroberts commented Jul 7, 2020

At the end of the recursive step in v2.9.1, memory still exceeds node capacity:
image
workflow_controller_logs_v2.9.1.txt

@jjtroberts
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I tested with v2.8.2 and the workflow has finally progressed past its point of failure in v2.9.x:
image

@alexec alexec mentioned this issue Jul 7, 2020
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alexec commented Jul 7, 2020

apiVersion: argoproj.io/v1alpha1
kind: Workflow
metadata:
  name: spring
spec:
  entrypoint: data-warehouse-pipeline

  onExit: exit-handler

  volumes:
    - name: client-volume
      configMap:
        name: client-config
    - name: env-volume
      configMap:
        name: env-config

  templates:

    # TEMPLATES: extractor
    - name: extractor
      inputs:
        parameters:
          - name: integrator-command
          - name: client-code
      container:
        image: docker/whalesay:latest
        imagePullPolicy: IfNotPresent
        command: ["cowsay"]
        # command: ["/bin/bash"]
        # Use "raw" jinja filter so ansible ignores these argo parameters
        # There must be no spaces between the double curly braces and the text or argo will fail to expand.
        args: ["{{inputs.parameters.integrator-command}}", "{{inputs.parameters.client-code}}"]
        # args: ["-c", "while true; do foo; sleep 2; done"]
        resources:
          requests:
            cpu: 200m
            memory: 512Mi
          limits:
            cpu: 800m
            memory: 768Mi
        env:
          - name : APP_ENV
            value: development
          - name : DB_CONNECTION
            value: default
          - name : DB_DRIVER
            value: sqlsrv
          - name : DB_HOST
            value: dwdb01
          - name : DB_USERNAME
            value: gd_det_user
          - name : DB_DATABASE
            value: GD_CRM_EXT_SPRING
          - name : DB_PASSWORD
            valueFrom:
              secretKeyRef:
                key: password
                name: gd-data-extractor-tool-secret
          - name : LSM_DB_HOST
            value: dwdb01
          - name : LSM_DB_DATABASE
            value: GD_LSM_DW
          - name : LSM_DB_USERNAME
            value: gd_det_user
          - name : LSM_DB_PASSWORD
            valueFrom:
              secretKeyRef:
                key: password
                name: gd-data-extractor-tool-secret
        volumeMounts:
          - mountPath: /var/www/html/environments/.env.spring
            name: client-volume
            subPath: .env.spring
          - mountPath: /var/www/html/.env
            name: env-volume
            subPath: .env
    # TEMPLATE: END

    # TEMPLATE: extractor-paginated
    - name: extractor-paginated
      inputs:
        parameters:
          - name: integrator-command
          - name: client-code
          - name: loop-var
      container:
        image: docker/whalesay:latest
        imagePullPolicy: IfNotPresent
        command: ["cowsay"]
        # Use "raw" jinja filter so ansible ignores these argo parameters
        # There must be no spaces between the double curly braces and the text or argo will fail to expand.
        args: ["{{inputs.parameters.integrator-command}}", "{{inputs.parameters.client-code}}", "{{inputs.parameters.loop-var}}"]
        resources:
          requests:
            cpu: 200m
            memory: 512Mi
          limits:
            cpu: 800m
            memory: 768Mi
        env:
          - name : DB_CONNECTION
            value: default
          - name : DB_DRIVER
            value: sqlsrv
          - name : DB_HOST
            value: dwdb01
          - name : DB_USERNAME
            value: gd_det_user
          - name : DB_DATABASE
            value: GD_CRM_EXT_SPRING
          - name : DB_PASSWORD
            valueFrom:
              secretKeyRef:
                key: password
                name: gd-data-extractor-tool-secret
        volumeMounts:
          - mountPath: /var/www/html/environments/.env.spring
            name: client-volume
            subPath: .env.spring
          - mountPath: /var/www/html/.env
            name: env-volume
            subPath: .env
    # TEMPLATE: END

    # TEMPLATE: individual-page-search
    - name: individual-page-search
      script:
        image: docker/whalesay:latest
        imagePullPolicy: IfNotPresent
        command: ["bash"]
        source: |
          echo 100
        # Use "raw" jinja filter so ansible ignores these argo parameters
        # There must be no spaces between the double curly braces and the text or argo will fail to expand.
        resources:
          requests:
            cpu: 200m
            memory: 512Mi
          limits:
            cpu: 800m
            memory: 768Mi
        env:
          - name : DB_CONNECTION
            value: default
          - name : DB_DRIVER
            value: sqlsrv
          - name : DB_HOST
            value: dwdb01
          - name : DB_USERNAME
            value: gd_det_user
          - name : DB_DATABASE
            value: GD_CRM_EXT_SPRING
          - name : DB_PASSWORD
            valueFrom:
              secretKeyRef:
                key: password
                name: gd-data-extractor-tool-secret
        volumeMounts:
          - mountPath: /var/www/html/environments/.env.spring
            name: client-volume
            subPath: .env.spring
          - mountPath: /var/www/html/.env
            name: env-volume
            subPath: .env
    # TEMPLATE: END

    # TEMPLATE: individual-batch-count
    - name: individual-batch-count
      script:
        image: docker/whalesay:latest
        imagePullPolicy: IfNotPresent
        command: ["bash"]
        source: |
          true
        # Use "raw" jinja filter so ansible ignores these argo parameters
        # There must be no spaces between the double curly braces and the text or argo will fail to expand.
        resources:
          requests:
            cpu: 200m
            memory: 512Mi
          limits:
            cpu: 800m
            memory: 768Mi
        env:
          - name : DB_CONNECTION
            value: default
          - name : DB_DRIVER
            value: sqlsrv
          - name : DB_HOST
            value: dwdb01
          - name : DB_USERNAME
            value: gd_det_user
          - name : DB_DATABASE
            value: GD_CRM_EXT_SPRING
          - name : DB_PASSWORD
            valueFrom:
              secretKeyRef:
                key: password
                name: gd-data-extractor-tool-secret
        volumeMounts:
          - mountPath: /var/www/html/environments/.env.spring
            name: client-volume
            subPath: .env.spring
          - mountPath: /var/www/html/.env
            name: env-volume
            subPath: .env
    # TEMPLATE: END

    # TEMPLATE: sqlcmd
    - name: sqlcmd
      inputs:
        parameters:
          - name: sql-command
      container:
        image: docker/whalesay:latest
        imagePullPolicy: IfNotPresent
        command: ["cowsay"]
        # Use "raw" jinja filter so ansible ignores these argo parameters
        # There must be no spaces between the double curly braces and the text or argo will fail to expand.
        args: ["{{inputs.parameters.sql-command}}"]
        resources:
          requests:
            cpu: 200m
            memory: 512Mi
          limits:
            cpu: 200m
            memory: 512Mi
        env:
          - name : ClientId
            value: SPRING
          - name : DB_HOST
            value: dwdb01
          - name : DB_DATABASE
            value: GD_CRM_EXT_SPRING
          - name : DB_USERNAME
            value: gd_det_user
          - name : DB_PASSWORD
            valueFrom:
              secretKeyRef:
                key: password
                name: gd-data-extractor-tool-secret
          - name : DB_INTAKE_USERNAME
            value: gd_intake_user
          - name : DB_INTAKE_PASSWORD
            valueFrom:
              secretKeyRef:
                key: password
                name: gd-data-intake-tool-secret
          - name : DB_FLYWAY_USERNAME
            value: svc_datawh_flyway_dev
          - name : DB_FLYWAY_PASSWORD
            valueFrom:
              secretKeyRef:
                key: password
                name: mssqlserver-mssql-linux-secret
    # TEMPLATE: END

    # TEMPLATE: whalesay
    - name: whalesay
      inputs:
        parameters:
          - name: message
      container:
        image: docker/whalesay:latest
        command: [cowsay]
        args: ["{{inputs.parameters.message}}"]
    # TEMPLATE: END

    # TEMPLATE: exit-handler
    - name: exit-handler
      steps:
        - - name: notify
            template: echo
            when: "{{workflow.status}} != Succeeded"
    # TEMPLATE: END

    # TEMPLATE: echo
    - name: echo
      container:
        image: docker/whalesay:latest
        command: [sh, -c]
        args: ["echo {{workflow.name}} {{workflow.status}}"]
    # TEMPLATE: END

    # TEMPLATE: calculate-loop-end
    - name: calculate-loop-end
      inputs:
        parameters:
          - name: total
          - name: limit
      script:
        image: python:latest
        command: [python]
        args: ["-c", "print(({{inputs.parameters.total}} - {{inputs.parameters.limit}}) + 1)"]
    # TEMPLATE: END

    # TEMPLATE: subtracter
    - name: subtracter
      inputs:
        parameters:
          - name: total
          - name: limit
      script:
        image: python:latest
        command: [python]
        args: ["-c", "print(int((abs(({{inputs.parameters.total}}-{{inputs.parameters.limit}}))+({{inputs.parameters.total}}-{{inputs.parameters.limit}}))/2))"]
    # TEMPLATE: END

    # TEMPLATE: pull-individual-page-repeatable
    - name: pull-individual-page-repeatable
      inputs:
        parameters:
          - name: total
          - name: limit
          - name: integrator-command
          - name: client-code
      dag:
        tasks:

          - name: get-loop-end-var
            template: calculate-loop-end
            arguments:
              parameters:
                - name: total
                  value: "{{inputs.parameters.total}}"
                - name: limit
                  value: "{{inputs.parameters.limit}}"

          - name: PullIndividualPage-AZ
            dependencies: [get-loop-end-var]
            template: extractor-paginated
            arguments:
              parameters:
                - name: integrator-command
                  value: "{{inputs.parameters.integrator-command}}"
                - name: client-code
                  value: "{{inputs.parameters.client-code}}"
                - name: loop-var
                  value: "{{item}}"
            withSequence:
              start: "{{inputs.parameters.total}}"
              end  : "{{tasks.get-loop-end-var.outputs.result}}"
            when: "{{tasks.get-loop-end-var.outputs.result}} > 0"

          - name: PullIndividualPage-BZ
            dependencies: [get-loop-end-var]
            template: extractor-paginated
            arguments:
              parameters:
                - name: integrator-command
                  value: "{{inputs.parameters.integrator-command}}"
                - name: client-code
                  value: "{{inputs.parameters.client-code}}"
                - name: loop-var
                  value: "{{item}}"
            withSequence:
              start: "{{inputs.parameters.total}}"
              end  : "1"
            when: "{{tasks.get-loop-end-var.outputs.result}} <= 0"

          - name: get-total-minus-limit
            dependencies: [PullIndividualPage-AZ, PullIndividualPage-BZ]
            template: subtracter
            arguments:
              parameters:
                - name: total
                  value: "{{inputs.parameters.total}}"
                - name: limit
                  value: "{{inputs.parameters.limit}}"

          - name: do-the-wave
            dependencies: [get-total-minus-limit]
            template: pull-individual-page-repeatable
            arguments:
              parameters:
                - name: total
                  value: "{{tasks.get-total-minus-limit.outputs.result}}"
                - name: limit
                  value: "{{inputs.parameters.limit}}"
                - name: integrator-command
                  value: "{{inputs.parameters.integrator-command}}"
                - name: client-code
                  value: "{{inputs.parameters.client-code}}"
            when: "{{tasks.get-total-minus-limit.outputs.result}} > 0"
    # TEMPLATE: END

    # TEMPLATE: data-warehouse-pipeline
    - name: data-warehouse-pipeline
      dag:
        tasks:

          - name: Migrate
            template: extractor
            arguments:
              parameters:
                - name: integrator-command
                  value: "run-migration"
                - name: client-code
                  value: "spring"

          - name: IndividualPageSearch
            dependencies: [Migrate]
            template: individual-page-search

          - name: PullIndividualPageByWave
            dependencies: [IndividualPageSearch]
            template: pull-individual-page-repeatable
            arguments:
              parameters:
                - name: total
                  value: "{{tasks.IndividualPageSearch.outputs.result}}"
                - name: limit
                  value: "4"
                - name: integrator-command
                  value: "pull:individual-page"
                - name: client-code
                  value: "spring"

          - name: IndividualBatchCount
            dependencies: [PullIndividualPageByWave]
            template: individual-batch-count

          - name: PullActivitiesCasesIndividualBatch
            dependencies: [IndividualBatchCount]
            template: extractor-paginated
            arguments:
              parameters:
                - name: integrator-command
                  value: "pull:activites-cases-individual-batch"
                - name: client-code
                  value: "spring"
                - name: loop-var
                  value: "{{item}}"
            withSequence:
              #count: "{{tasks.IndividualBatchCount.outputs.result}}"
              start: "1"
              end: "{{tasks.IndividualBatchCount.outputs.result}}"

          - name: ConsolidateBatches
            dependencies: [PullActivitiesCasesIndividualBatch]
            template: whalesay
            arguments:
              parameters:
                - name: message
                  value: "PullActivitiesCasesIndividualBatch Completed"

          - name: Address
            dependencies: [ConsolidateBatches]
            template: extractor
            arguments:
              parameters:
                - name: integrator-command
                  value: "pull:address"
                - name: client-code
                  value: "spring"

          - name: HousingContracts
            dependencies: [ConsolidateBatches]
            template: extractor
            arguments:
              parameters:
                - name: integrator-command
                  value: "pull:housing_contracts"
                - name: client-code
                  value: "spring"

          - name: Transactions
            dependencies: [ConsolidateBatches]
            template: extractor
            arguments:
              parameters:
                - name: integrator-command
                  value: "pull:transactions"
                - name: client-code
                  value: "spring"

          - name: Campaigns
            dependencies: [ConsolidateBatches]
            template: extractor
            arguments:
              parameters:
                - name: integrator-command
                  value: "pull:campaigns-and-campaign-individuals"
                - name: client-code
                  value: "spring"

          - name: Communities
            dependencies: [ConsolidateBatches]
            template: extractor
            arguments:
              parameters:
                - name: integrator-command
                  value: "pull:communities"
                - name: client-code
                  value: "spring"

          - name: Types
            dependencies: [ConsolidateBatches]
            template: extractor
            arguments:
              parameters:
                - name: integrator-command
                  value: "pull:types"
                - name: client-code
                  value: "spring"

          - name: Units
            dependencies: [ConsolidateBatches]
            template: extractor
            arguments:
              parameters:
                - name: integrator-command
                  value: "pull:units"
                - name: client-code
                  value: "spring"

          - name: Users
            dependencies: [ConsolidateBatches]
            template: extractor
            arguments:
              parameters:
                - name: integrator-command
                  value: "pull:users"
                - name: client-code
                  value: "spring"

          - name: ActOn
            dependencies: [ConsolidateBatches]
            template: pull-from-act-on

          - name: RunIntake
            dependencies: [Address, HousingContracts, Transactions, Campaigns, Communities, Types, Units, Users, ActOn]
            template: sqlcmd
            arguments:
              parameters:
                - name: sql-command
                  value: /opt/mssql-tools/bin/sqlcmd -b -S $DB_HOST -U $DB_INTAKE_USERNAME -P $DB_INTAKE_PASSWORD -i /opt/scripts/1_run_usp_RunIntake.sql

          - name: RemoveDuplicateIndividuals
            dependencies: [RunIntake]
            template: sqlcmd
            arguments:
              parameters:
                - name: sql-command
                  value: /opt/mssql-tools/bin/sqlcmd -b -S $DB_HOST -U $DB_INTAKE_USERNAME -P $DB_INTAKE_PASSWORD -i /opt/scripts/2_run_usp_RemoveDuplicateIndividuals.sql

          - name: PopulateLookupsInStage
            dependencies: [RemoveDuplicateIndividuals]
            template: sqlcmd
            arguments:
              parameters:
                - name: sql-command
                  value: /opt/mssql-tools/bin/sqlcmd -b -S $DB_HOST -U $DB_INTAKE_USERNAME -P $DB_INTAKE_PASSWORD -i /opt/scripts/3_run_usp_PopulateLookupsInStage.sql

          - name: SalesCounselorStageToDW
            dependencies: [PopulateLookupsInStage]
            template: sqlcmd
            arguments:
              parameters:
                - name: sql-command
                  value: /opt/mssql-tools/bin/sqlcmd -b -S $DB_HOST -U $DB_INTAKE_USERNAME -P $DB_INTAKE_PASSWORD -i /opt/scripts/4_run_usp_SalesCounselorStageToDW.sql

          - name: AccountStageToDW
            dependencies: [SalesCounselorStageToDW]
            template: sqlcmd
            arguments:
              parameters:
                - name: sql-command
                  value: /opt/mssql-tools/bin/sqlcmd -b -S $DB_HOST -U $DB_INTAKE_USERNAME -P $DB_INTAKE_PASSWORD -i /opt/scripts/5_run_usp_AccountStageToDW.sql

          - name: OpportunityStageToDW
            dependencies: [AccountStageToDW]
            template: sqlcmd
            arguments:
              parameters:
                - name: sql-command
                  value: /opt/mssql-tools/bin/sqlcmd -b -S $DB_HOST -U $DB_INTAKE_USERNAME -P $DB_INTAKE_PASSWORD -i /opt/scripts/6_run_usp_OpportunityStageToDW.sql

          - name: IndividualStageToDW
            dependencies: [OpportunityStageToDW]
            template: sqlcmd
            arguments:
              parameters:
                - name: sql-command
                  value: /opt/mssql-tools/bin/sqlcmd -b -S $DB_HOST -U $DB_INTAKE_USERNAME -P $DB_INTAKE_PASSWORD -i /opt/scripts/7_run_usp_IndividualStageToDW.sql

          - name: ActivityStageToDW
            dependencies: [IndividualStageToDW]
            template: sqlcmd
            arguments:
              parameters:
                - name: sql-command
                  value: /opt/mssql-tools/bin/sqlcmd -b -S $DB_HOST -U $DB_INTAKE_USERNAME -P $DB_INTAKE_PASSWORD -i /opt/scripts/8_run_usp_ActivityStageToDW.sql

          - name: ProcessCRMDWScores
            dependencies: [ActivityStageToDW]
            template: sqlcmd
            arguments:
              parameters:
                - name: sql-command
                  value: /opt/mssql-tools/bin/sqlcmd -b -S $DB_HOST -U $DB_INTAKE_USERNAME -P $DB_INTAKE_PASSWORD -i /opt/scripts/9_run_usp_Process_CRMDW_Scores.sql

          - name: Push
            dependencies: [ProcessCRMDWScores]
            template: extractor
            arguments:
              parameters:
                - name: integrator-command
                  value: "push:scores"
                - name: client-code
                  value: "spring"
    # TEMPLATE: END

    # TEMPLATE: pull-from-act-on
    - name: pull-from-act-on
      script:
        image: docker/whalesay:latest
        imagePullPolicy: IfNotPresent
        command: ["bash"]
        source: |
          echo "pull_from_act_on var was false; doing nothing"
        # Use "raw" jinja filter so ansible ignores these argo parameters
        # There must be no spaces between the double curly braces and the text or argo will fail to expand.
        resources:
          requests:
            cpu: 200m
            memory: 512Mi
          limits:
            cpu: 800m
            memory: 768Mi
        env:
          - name : DB_CONNECTION
            value: default
          - name : DB_DRIVER
            value: sqlsrv
          - name : DB_HOST
            value: dwdb01
          - name : DB_USERNAME
            value: gd_det_user
          - name : DB_DATABASE
            value: GD_CRM_EXT_SPRING
          - name : DB_PASSWORD
            valueFrom:
              secretKeyRef:
                key: password
                name: gd-data-extractor-tool-secret
        volumeMounts:
          - mountPath: /var/www/html/environments/.env.spring
            name: client-volume
            subPath: .env.spring
          - mountPath: /var/www/html/.env
            name: env-volume
            subPath: .env
    # TEMPLATE: END

@simster7

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alexec commented Jul 7, 2020

     640MB 94.89% 94.89%   663.01MB 98.30%  github.com/argoproj/argo/workflow/controller.(*dagContext).assessDAGPhase
   21.01MB  3.11% 98.00%    21.01MB  3.11%  github.com/argoproj/argo/workflow/controller.getChildNodeIndex

@alexec
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alexec commented Jul 7, 2020

      flat  flat%   sum%        cum   cum%
    1280MB 98.58% 98.58%     1287MB 99.12%  github.com/argoproj/argo/workflow/controller.(*dagContext).assessDAGPhase

@alexec
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alexec commented Jul 7, 2020

profile001

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alexec commented Jul 7, 2020

spring.yaml.txt

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alexec commented Jul 8, 2020

Fix in v2.9.2

@alexec alexec closed this as completed Jul 8, 2020
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