MovPartextImport.m

function MovementRegressors = MovPartextImport(filename, startRow, endRow)
%MovementRegressors = MovPartextImport(filename, startRow, endRow)
%
% Internal Function:
% To read the movement parameter text files off the HCP. Generated by
% Matlab.
%
% SA, UoW, 2017
% srafyouni@gmail.com
%
%
if nargin<=2
    startRow = 1;
    endRow = inf;
end

formatSpec = '%10s%11s%11s%11s%11s%11s%11s%11s%11s%11s%11s%s%[^\n\r]';
fileID = fopen(filename,'r');

dataArray = textscan(fileID, formatSpec, endRow(1)-startRow(1)+1, 'Delimiter', '', 'WhiteSpace', '', 'HeaderLines', startRow(1)-1, 'ReturnOnError', false, 'EndOfLine', '\r\n');
for block=2:length(startRow)
    frewind(fileID);
    dataArrayBlock = textscan(fileID, formatSpec, endRow(block)-startRow(block)+1, 'Delimiter', '', 'WhiteSpace', '', 'HeaderLines', startRow(block)-1, 'ReturnOnError', false, 'EndOfLine', '\r\n');
    for col=1:length(dataArray)
        dataArray{col} = [dataArray{col};dataArrayBlock{col}];
    end
end

fclose(fileID);

raw = repmat({''},length(dataArray{1}),length(dataArray)-1);
for col=1:length(dataArray)-1
    raw(1:length(dataArray{col}),col) = dataArray{col};
end
numericData = NaN(size(dataArray{1},1),size(dataArray,2));

for col=[1,2,3,4,5,6,7,8,9,10,11,12,13]
    % Converts text in the input cell array to numbers. Replaced non-numeric
    % text with NaN.
    rawData = dataArray{col};
    for row=1:size(rawData, 1);
        % Create a regular expression to detect and remove non-numeric prefixes and
        % suffixes.
        regexstr = '(?<prefix>.*?)(?<numbers>([-]*(\d+[\,]*)+[\.]{0,1}\d*[eEdD]{0,1}[-+]*\d*[i]{0,1})|([-]*(\d+[\,]*)*[\.]{1,1}\d+[eEdD]{0,1}[-+]*\d*[i]{0,1}))(?<suffix>.*)';
        try
            result = regexp(rawData{row}, regexstr, 'names');
            numbers = result.numbers;
            
            % Detected commas in non-thousand locations.
            invalidThousandsSeparator = false;
            if any(numbers==',');
                thousandsRegExp = '^\d+?(\,\d{3})*\.{0,1}\d*$';
                if isempty(regexp(numbers, thousandsRegExp, 'once'));
                    numbers = NaN;
                    invalidThousandsSeparator = true;
                end
            end
            % Convert numeric text to numbers.
            if ~invalidThousandsSeparator;
                numbers = textscan(strrep(numbers, ',', ''), '%f');
                numericData(row, col) = numbers{1};
                raw{row, col} = numbers{1};
            end
        catch me
        end
    end
end

R = cellfun(@(x) ~isnumeric(x) && ~islogical(x),raw); % Find non-numeric cells
raw(R) = {NaN}; % Replace non-numeric cells

MovementRegressors = cell2mat(raw);