From 3e6b50cabeb9b86e23eea51a0cc96875488929df Mon Sep 17 00:00:00 2001
From: Patrick Roddy <patrickjamesroddy@gmail.com>
Date: Tue, 31 Oct 2023 09:02:50 +0000
Subject: [PATCH] Remove `ignore` in favor of `noqa` (#274)

---
 examples/arbitrary/__init__.py                |  1 +
 .../arbitrary/_denoising_slepian_wavelet.py   |  2 +-
 examples/arbitrary/africa/__init__.py         |  1 +
 examples/arbitrary/south_america/__init__.py  |  1 +
 examples/mesh/__init__.py                     |  1 +
 examples/misc/__init__.py                     |  1 +
 examples/misc/_denoising_axisym.py            |  2 +-
 examples/polar_cap/__init__.py                |  1 +
 examples/wavelets/__init__.py                 |  1 +
 pyproject.toml                                |  3 ---
 ...xisymmetric_wavelet_coefficients_africa.py |  6 +++++-
 ...axisymmetric_wavelet_coefficients_earth.py |  6 +++++-
 ...tric_wavelet_coefficients_south_america.py |  6 +++++-
 .../functions/axisymmetric_wavelets.py        |  6 +++++-
 src/sleplet/functions/ridgelets.py            |  6 +++++-
 src/sleplet/functions/slepian.py              |  5 ++++-
 .../slepian_wavelet_coefficients_africa.py    |  6 +++++-
 ...pian_wavelet_coefficients_south_america.py |  6 +++++-
 src/sleplet/functions/slepian_wavelets.py     |  6 +++++-
 src/sleplet/functions/spherical_harmonic.py   | 12 +++++++++--
 src/sleplet/meshes/mesh_basis_functions.py    |  5 ++++-
 src/sleplet/meshes/mesh_slepian_functions.py  |  5 ++++-
 .../mesh_slepian_wavelet_coefficients.py      |  6 +++++-
 src/sleplet/meshes/mesh_slepian_wavelets.py   |  6 +++++-
 src/sleplet/slepian/region.py                 | 20 +++++++++++++++----
 src/sleplet/slepian/slepian_polar_cap.py      |  5 ++++-
 tests/__init__.py                             |  1 +
 27 files changed, 102 insertions(+), 25 deletions(-)

diff --git a/examples/arbitrary/__init__.py b/examples/arbitrary/__init__.py
index e69de29bb..6e031999e 100644
--- a/examples/arbitrary/__init__.py
+++ b/examples/arbitrary/__init__.py
@@ -0,0 +1 @@
+# noqa: D104
diff --git a/examples/arbitrary/_denoising_slepian_wavelet.py b/examples/arbitrary/_denoising_slepian_wavelet.py
index 9854c9a8f..f2e136a92 100644
--- a/examples/arbitrary/_denoising_slepian_wavelet.py
+++ b/examples/arbitrary/_denoising_slepian_wavelet.py
@@ -21,7 +21,7 @@ def denoising_slepian_wavelet(
     )
 
     # compute wavelet noise
-    sigma_j = sleplet.noise._compute_slepian_sigma_j(
+    sigma_j = sleplet.noise._compute_slepian_sigma_j(  # noqa: SLF001
         signal.L,
         signal.coefficients,
         slepian_wavelets.wavelets,
diff --git a/examples/arbitrary/africa/__init__.py b/examples/arbitrary/africa/__init__.py
index e69de29bb..6e031999e 100644
--- a/examples/arbitrary/africa/__init__.py
+++ b/examples/arbitrary/africa/__init__.py
@@ -0,0 +1 @@
+# noqa: D104
diff --git a/examples/arbitrary/south_america/__init__.py b/examples/arbitrary/south_america/__init__.py
index e69de29bb..6e031999e 100644
--- a/examples/arbitrary/south_america/__init__.py
+++ b/examples/arbitrary/south_america/__init__.py
@@ -0,0 +1 @@
+# noqa: D104
diff --git a/examples/mesh/__init__.py b/examples/mesh/__init__.py
index e69de29bb..6e031999e 100644
--- a/examples/mesh/__init__.py
+++ b/examples/mesh/__init__.py
@@ -0,0 +1 @@
+# noqa: D104
diff --git a/examples/misc/__init__.py b/examples/misc/__init__.py
index e69de29bb..6e031999e 100644
--- a/examples/misc/__init__.py
+++ b/examples/misc/__init__.py
@@ -0,0 +1 @@
+# noqa: D104
diff --git a/examples/misc/_denoising_axisym.py b/examples/misc/_denoising_axisym.py
index 210f0e255..561bb5f94 100644
--- a/examples/misc/_denoising_axisym.py
+++ b/examples/misc/_denoising_axisym.py
@@ -30,7 +30,7 @@ def denoising_axisym(  # noqa: PLR0913
     )
 
     # compute wavelet noise
-    sigma_j = sleplet.noise._compute_sigma_j(
+    sigma_j = sleplet.noise._compute_sigma_j(  # noqa: SLF001
         signal.coefficients,
         axisymmetric_wavelets.wavelets[1:],
         snr_in,
diff --git a/examples/polar_cap/__init__.py b/examples/polar_cap/__init__.py
index e69de29bb..6e031999e 100644
--- a/examples/polar_cap/__init__.py
+++ b/examples/polar_cap/__init__.py
@@ -0,0 +1 @@
+# noqa: D104
diff --git a/examples/wavelets/__init__.py b/examples/wavelets/__init__.py
index e69de29bb..6e031999e 100644
--- a/examples/wavelets/__init__.py
+++ b/examples/wavelets/__init__.py
@@ -0,0 +1 @@
+# noqa: D104
diff --git a/pyproject.toml b/pyproject.toml
index 45fff7afb..ea5f12139 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -122,14 +122,11 @@ isort = {known-first-party = [
 ]}}
 per-file-ignores = {"examples*" = [
     "D100",
-    "D104",
-    "SLF001",
     "T201",
 ], "src*" = [
     "SLF001",
 ], "tests*" = [
     "D100",
-    "D104",
     "S101",
     "SLF001",
 ]}
diff --git a/src/sleplet/functions/axisymmetric_wavelet_coefficients_africa.py b/src/sleplet/functions/axisymmetric_wavelet_coefficients_africa.py
index a338d372f..bb2a90e93 100644
--- a/src/sleplet/functions/axisymmetric_wavelet_coefficients_africa.py
+++ b/src/sleplet/functions/axisymmetric_wavelet_coefficients_africa.py
@@ -90,7 +90,11 @@ def _create_wavelet_coefficients(
         return wavelets, wavelet_coefficients
 
     @pydantic.field_validator("j")
-    def _check_j(cls, v: int | None, info: pydantic.ValidationInfo) -> int | None:  # noqa: ANN101
+    def _check_j(
+        cls,  # noqa: ANN101
+        v: int | None,
+        info: pydantic.ValidationInfo,
+    ) -> int | None:
         j_max = pys2let.pys2let_j_max(
             info.data["B"],
             info.data["L"],
diff --git a/src/sleplet/functions/axisymmetric_wavelet_coefficients_earth.py b/src/sleplet/functions/axisymmetric_wavelet_coefficients_earth.py
index 18ffc3adc..a863537fd 100644
--- a/src/sleplet/functions/axisymmetric_wavelet_coefficients_earth.py
+++ b/src/sleplet/functions/axisymmetric_wavelet_coefficients_earth.py
@@ -87,7 +87,11 @@ def _create_wavelet_coefficients(
         return wavelets, wavelet_coefficients
 
     @pydantic.field_validator("j")
-    def _check_j(cls, v: int | None, info: pydantic.ValidationInfo) -> int | None:  # noqa: ANN101
+    def _check_j(
+        cls,  # noqa: ANN101
+        v: int | None,
+        info: pydantic.ValidationInfo,
+    ) -> int | None:
         j_max = pys2let.pys2let_j_max(
             info.data["B"],
             info.data["L"],
diff --git a/src/sleplet/functions/axisymmetric_wavelet_coefficients_south_america.py b/src/sleplet/functions/axisymmetric_wavelet_coefficients_south_america.py
index 509ce0a62..ab513299c 100644
--- a/src/sleplet/functions/axisymmetric_wavelet_coefficients_south_america.py
+++ b/src/sleplet/functions/axisymmetric_wavelet_coefficients_south_america.py
@@ -89,7 +89,11 @@ def _create_wavelet_coefficients(
         return wavelets, wavelet_coefficients
 
     @pydantic.field_validator("j")
-    def _check_j(cls, v: int | None, info: pydantic.ValidationInfo) -> int | None:  # noqa: ANN101
+    def _check_j(
+        cls,  # noqa: ANN101
+        v: int | None,
+        info: pydantic.ValidationInfo,
+    ) -> int | None:
         j_max = pys2let.pys2let_j_max(
             info.data["B"],
             info.data["L"],
diff --git a/src/sleplet/functions/axisymmetric_wavelets.py b/src/sleplet/functions/axisymmetric_wavelets.py
index 8116b49cd..94d9b4009 100644
--- a/src/sleplet/functions/axisymmetric_wavelets.py
+++ b/src/sleplet/functions/axisymmetric_wavelets.py
@@ -74,7 +74,11 @@ def _create_wavelets(self: typing_extensions.Self) -> npt.NDArray[np.complex_]:
         )
 
     @pydantic.field_validator("j")
-    def _check_j(cls, v: int | None, info: pydantic.ValidationInfo) -> int | None:  # noqa: ANN101
+    def _check_j(
+        cls,  # noqa: ANN101
+        v: int | None,
+        info: pydantic.ValidationInfo,
+    ) -> int | None:
         j_max = pys2let.pys2let_j_max(
             info.data["B"],
             info.data["L"],
diff --git a/src/sleplet/functions/ridgelets.py b/src/sleplet/functions/ridgelets.py
index 9131e6641..359d49194 100644
--- a/src/sleplet/functions/ridgelets.py
+++ b/src/sleplet/functions/ridgelets.py
@@ -109,7 +109,11 @@ def _compute_ring(self: typing_extensions.Self) -> npt.NDArray[np.complex_]:
         return ring_lm
 
     @pydantic.field_validator("j")
-    def _check_j(cls, v: int | None, info: pydantic.ValidationInfo) -> int | None:  # noqa: ANN101
+    def _check_j(
+        cls,  # noqa: ANN101
+        v: int | None,
+        info: pydantic.ValidationInfo,
+    ) -> int | None:
         j_max = pys2let.pys2let_j_max(
             info.data["B"],
             info.data["L"],
diff --git a/src/sleplet/functions/slepian.py b/src/sleplet/functions/slepian.py
index 55034bcb8..e130f40a4 100644
--- a/src/sleplet/functions/slepian.py
+++ b/src/sleplet/functions/slepian.py
@@ -77,7 +77,10 @@ def _validate_rank(self: typing_extensions.Self) -> None:
                 raise ValueError(msg)
 
     @pydantic.field_validator("rank")
-    def _check_rank(cls, v: int) -> int:  # noqa: ANN101
+    def _check_rank(
+        cls,  # noqa: ANN101
+        v: int,
+    ) -> int:
         if not isinstance(v, int):
             msg = "rank should be an integer"
             raise TypeError(msg)
diff --git a/src/sleplet/functions/slepian_wavelet_coefficients_africa.py b/src/sleplet/functions/slepian_wavelet_coefficients_africa.py
index a02145c70..1180f646b 100644
--- a/src/sleplet/functions/slepian_wavelet_coefficients_africa.py
+++ b/src/sleplet/functions/slepian_wavelet_coefficients_africa.py
@@ -95,7 +95,11 @@ def _create_wavelet_coefficients(
         return wavelets, wavelet_coefficients
 
     @pydantic.field_validator("j")
-    def _check_j(cls, v: int | None, info: pydantic.ValidationInfo) -> int | None:  # noqa: ANN101
+    def _check_j(
+        cls,  # noqa: ANN101
+        v: int | None,
+        info: pydantic.ValidationInfo,
+    ) -> int | None:
         j_max = pys2let.pys2let_j_max(
             info.data["B"],
             info.data["L"] ** 2,
diff --git a/src/sleplet/functions/slepian_wavelet_coefficients_south_america.py b/src/sleplet/functions/slepian_wavelet_coefficients_south_america.py
index c5a28c6d8..fa8fc74ee 100644
--- a/src/sleplet/functions/slepian_wavelet_coefficients_south_america.py
+++ b/src/sleplet/functions/slepian_wavelet_coefficients_south_america.py
@@ -95,7 +95,11 @@ def _create_wavelet_coefficients(
         return wavelets, wavelet_coefficients
 
     @pydantic.field_validator("j")
-    def _check_j(cls, v: int | None, info: pydantic.ValidationInfo) -> int | None:  # noqa: ANN101
+    def _check_j(
+        cls,  # noqa: ANN101
+        v: int | None,
+        info: pydantic.ValidationInfo,
+    ) -> int | None:
         j_max = pys2let.pys2let_j_max(
             info.data["B"],
             info.data["L"] ** 2,
diff --git a/src/sleplet/functions/slepian_wavelets.py b/src/sleplet/functions/slepian_wavelets.py
index 4b0fc5739..489f93552 100644
--- a/src/sleplet/functions/slepian_wavelets.py
+++ b/src/sleplet/functions/slepian_wavelets.py
@@ -68,7 +68,11 @@ def _create_wavelets(self: typing_extensions.Self) -> npt.NDArray[np.float_]:
         return sleplet.wavelet_methods.create_kappas(self.L**2, self.B, self.j_min)
 
     @pydantic.field_validator("j")
-    def _check_j(cls, v: int | None, info: pydantic.ValidationInfo) -> int | None:  # noqa: ANN101
+    def _check_j(
+        cls,  # noqa: ANN101
+        v: int | None,
+        info: pydantic.ValidationInfo,
+    ) -> int | None:
         j_max = pys2let.pys2let_j_max(
             info.data["B"],
             info.data["L"] ** 2,
diff --git a/src/sleplet/functions/spherical_harmonic.py b/src/sleplet/functions/spherical_harmonic.py
index ca73fcd3c..907db76cb 100644
--- a/src/sleplet/functions/spherical_harmonic.py
+++ b/src/sleplet/functions/spherical_harmonic.py
@@ -49,7 +49,11 @@ def _setup_args(self: typing_extensions.Self) -> None:
             self.ell, self.m = self.extra_args
 
     @pydantic.field_validator("ell")
-    def _check_ell(cls, v: int, info: pydantic.ValidationInfo) -> int:  # noqa: ANN101
+    def _check_ell(
+        cls,  # noqa: ANN101
+        v: int,
+        info: pydantic.ValidationInfo,
+    ) -> int:
         if not isinstance(v, int):
             msg = "ell should be an integer"
             raise TypeError(msg)
@@ -62,7 +66,11 @@ def _check_ell(cls, v: int, info: pydantic.ValidationInfo) -> int:  # noqa: ANN1
         return v
 
     @pydantic.field_validator("m")
-    def _check_m(cls, v: int, info: pydantic.ValidationInfo) -> int:  # noqa: ANN101
+    def _check_m(
+        cls,  # noqa: ANN101
+        v: int,
+        info: pydantic.ValidationInfo,
+    ) -> int:
         if not isinstance(v, int):
             msg = "m should be an integer"
             raise TypeError(msg)
diff --git a/src/sleplet/meshes/mesh_basis_functions.py b/src/sleplet/meshes/mesh_basis_functions.py
index ae41ce779..5c93477b6 100644
--- a/src/sleplet/meshes/mesh_basis_functions.py
+++ b/src/sleplet/meshes/mesh_basis_functions.py
@@ -64,7 +64,10 @@ def _validate_rank(self: typing_extensions.Self) -> None:
                 raise ValueError(msg)
 
     @pydantic.field_validator("rank")
-    def _check_rank(cls, v: int) -> int:  # noqa: ANN101
+    def _check_rank(
+        cls,  # noqa: ANN101
+        v: int,
+    ) -> int:
         if not isinstance(v, int):
             msg = "rank should be an integer"
             raise TypeError(msg)
diff --git a/src/sleplet/meshes/mesh_slepian_functions.py b/src/sleplet/meshes/mesh_slepian_functions.py
index 9e8b35273..78f9ad705 100644
--- a/src/sleplet/meshes/mesh_slepian_functions.py
+++ b/src/sleplet/meshes/mesh_slepian_functions.py
@@ -66,7 +66,10 @@ def _validate_rank(self: typing_extensions.Self) -> None:
                 raise ValueError(msg)
 
     @pydantic.field_validator("rank")
-    def _check_rank(cls, v: int) -> int:  # noqa: ANN101
+    def _check_rank(
+        cls,  # noqa: ANN101
+        v: int,
+    ) -> int:
         if not isinstance(v, int):
             msg = "rank should be an integer"
             raise TypeError(msg)
diff --git a/src/sleplet/meshes/mesh_slepian_wavelet_coefficients.py b/src/sleplet/meshes/mesh_slepian_wavelet_coefficients.py
index 5b9e9b27c..daab80e94 100644
--- a/src/sleplet/meshes/mesh_slepian_wavelet_coefficients.py
+++ b/src/sleplet/meshes/mesh_slepian_wavelet_coefficients.py
@@ -79,7 +79,11 @@ def _create_wavelet_coefficients(
         return wavelets, wavelet_coefficients
 
     @pydantic.field_validator("j")
-    def _check_j(cls, v: int | None, info: pydantic.ValidationInfo) -> int | None:  # noqa: ANN101
+    def _check_j(
+        cls,  # noqa: ANN101
+        v: int | None,
+        info: pydantic.ValidationInfo,
+    ) -> int | None:
         j_max = pys2let.pys2let_j_max(
             info.data["B"],
             info.data["mesh"].mesh_eigenvalues.shape[0],
diff --git a/src/sleplet/meshes/mesh_slepian_wavelets.py b/src/sleplet/meshes/mesh_slepian_wavelets.py
index 37d8806b7..6f24bed6f 100644
--- a/src/sleplet/meshes/mesh_slepian_wavelets.py
+++ b/src/sleplet/meshes/mesh_slepian_wavelets.py
@@ -65,7 +65,11 @@ def _create_wavelets(self: typing_extensions.Self) -> npt.NDArray[np.float_]:
         )
 
     @pydantic.field_validator("j")
-    def _check_j(cls, v: int | None, info: pydantic.ValidationInfo) -> int | None:  # noqa: ANN101
+    def _check_j(
+        cls,  # noqa: ANN101
+        v: int | None,
+        info: pydantic.ValidationInfo,
+    ) -> int | None:
         j_max = pys2let.pys2let_j_max(
             info.data["B"],
             info.data["mesh"].mesh_eigenvalues.shape[0],
diff --git a/src/sleplet/slepian/region.py b/src/sleplet/slepian/region.py
index 7c3c7dcc4..a96309157 100644
--- a/src/sleplet/slepian/region.py
+++ b/src/sleplet/slepian/region.py
@@ -92,7 +92,10 @@ def _identify_region(self: typing_extensions.Self) -> None:
             raise AttributeError(msg)
 
     @pydantic.field_validator("phi_max")
-    def _check_phi_max(cls, v: float) -> float:  # noqa: ANN101
+    def _check_phi_max(
+        cls,  # noqa: ANN101
+        v: float,
+    ) -> float:
         if v < sleplet._vars.PHI_MIN_DEFAULT:
             msg = "phi_max cannot be negative"
             raise ValueError(msg)
@@ -105,7 +108,10 @@ def _check_phi_max(cls, v: float) -> float:  # noqa: ANN101
         return v
 
     @pydantic.field_validator("phi_min")
-    def _check_phi_min(cls, v: float) -> float:  # noqa: ANN101
+    def _check_phi_min(
+        cls,  # noqa: ANN101
+        v: float,
+    ) -> float:
         if v < sleplet._vars.PHI_MIN_DEFAULT:
             msg = "phi_min cannot be negative"
             raise ValueError(msg)
@@ -118,7 +124,10 @@ def _check_phi_min(cls, v: float) -> float:  # noqa: ANN101
         return v
 
     @pydantic.field_validator("theta_max")
-    def _check_theta_max(cls, v: float) -> float:  # noqa: ANN101
+    def _check_theta_max(
+        cls,  # noqa: ANN101
+        v: float,
+    ) -> float:
         if v < sleplet._vars.THETA_MIN_DEFAULT:
             msg = "theta_max cannot be negative"
             raise ValueError(msg)
@@ -131,7 +140,10 @@ def _check_theta_max(cls, v: float) -> float:  # noqa: ANN101
         return v
 
     @pydantic.field_validator("theta_min")
-    def _check_theta_min(cls, v: float) -> float:  # noqa: ANN101
+    def _check_theta_min(
+        cls,  # noqa: ANN101
+        v: float,
+    ) -> float:
         if v < sleplet._vars.THETA_MIN_DEFAULT:
             msg = "theta_min cannot be negative"
             raise ValueError(msg)
diff --git a/src/sleplet/slepian/slepian_polar_cap.py b/src/sleplet/slepian/slepian_polar_cap.py
index 70ae5667e..9603aeafd 100644
--- a/src/sleplet/slepian/slepian_polar_cap.py
+++ b/src/sleplet/slepian/slepian_polar_cap.py
@@ -406,7 +406,10 @@ def _check_order(
         return v
 
     @pydantic.field_validator("theta_max")
-    def _check_theta_max(cls, v: float) -> float:  # noqa: ANN101
+    def _check_theta_max(
+        cls,  # noqa: ANN101
+        v: float,
+    ) -> float:
         if v == 0:
             msg = "theta_max cannot be zero"
             raise ValueError(msg)
diff --git a/tests/__init__.py b/tests/__init__.py
index e69de29bb..6e031999e 100644
--- a/tests/__init__.py
+++ b/tests/__init__.py
@@ -0,0 +1 @@
+# noqa: D104