DESCRIPTION

Package: exSTRa
Type: Package
Title: Expanded STR algorithm: detecting expansions in Illumina sequencing data
Version: 0.90.1
Date: 2022-08-18
Author: Rick Tankard
Maintainer: Rick Tankard <tankard.r@wehi.edu.au>
Description: Detecting expansions with paired-end Illumina sequencing data.
License: GPL-2
Encoding: UTF-8
Depends:
    R (>= 3.6),
    data.table (>= 1.10.4-3)
Imports: 
    testit (>= 0.7), 
    checkmate (>= 2.1.0),
    stringr (>= 1.2.0), 
    reshape2 (>= 1.4.3), 
    magrittr (>= 1.5), 
    RColorBrewer (>= 1.1-2),
    ggplot2 (>= 3.3.6)
Suggests: 
    testthat (>= 2.0.0),
    DiagrammeR (>= 0.9.2),
    DiagrammeRsvg (>= 0.1),
    xlsx (>= 0.5.7),
    knitr (>= 1.20),
    rmarkdown (>= 1.11),
    covr (>= 3.5.1)
RoxygenNote: 7.2.1
LazyData: true
Collate:
    'CLASS_exstra_db.R'
    'CLASS_exstra_score.R'
    'CLASS_exstra_tsum.R'
    'GENERICS.R'
    'add_alpha_.R'
    'exstra_known.R'
    'exstra_wgs_pcr_2.R'
    'filter_low_scores.R'
    'filter_sex.R'
    'ggplot.exstra_score.R'
    'loci_normal_expansion.R'
    'p_values.R'
    'plot_multi.R'
    'private_functions.R'
    'rbind_score_list.R'
    'read_exstra_db_txt_guesser.R'
    'read_exstra_db_known.R'
    'read_exstra_db_ucsc.R'
    'read_exstra_db_xlsx.R'
    'read_exstra_db.R'
    'read_score.R'
    'suggested_exstra_pipeline.R'
    'tsum_p_value_summary.R'
    'tsum_test.R'
    'zzz.R'
VignetteBuilder: knitr