parameters_file.txt

# This files contains the information needed for the Metashot Analysis

################
# general data #
################
script_path :
reference_path :

################
#  human data  #
################
star_genome : Homo_sapiens/

################
#  virus data  #
################
virus_bowtie_index : Virus/bowtie_index/Viral_division
virus_nodesfile : Virus/tango_dmp_folder/visualization_virus.dmp
virus_tango_dmp : Virus/tango_dmp_folder/VIRUS_DMP
human_virus_list : Virus/human_viruses_selection/accepted_accession.lst
herv_list : Virus/tango_dmp_folder/herv.lst

#################
# bacteria data #
#################
bacterial_split_file : Bacteria/bacterial_bowtie_index_reference.lst
bacteria_nodesfile : Bacteria/tango_dmp_folder/visualization_bacterial.dmp
bacteria_tango_dmp : Bacteria/tango_dmp_folder/BACTERIA_DMP

################
#  fungi data  #
################
fungi_bowtie_index : Fungi/bowtie_index/Fungal_division
fungi_nodesfile : Fungi/tango_dmp_folder/visualization_fungi.dmp
fungi_tango_dmp : Fungi/tango_dmp_folder/FUNGI_DMP

################
# protist data #
################
protist_bowtie_index : Protist/bowtie_index/Protista_division
protist_nodesfile : Protist/tango_dmp_folder/visualization_protista.dmp
protist_tango_dmp : Protist/tango_dmp_folder/PROTISTA_DMP


##################
# krona taxonomy #
##################
krona_tax : krona_tax