From 5d42e2f6931887c69f6c31326ae228847a34e361 Mon Sep 17 00:00:00 2001
From: akeshavan <anishakeshavan@gmail.com>
Date: Mon, 18 Sep 2017 10:43:31 -0700
Subject: [PATCH] fix: new circle file w/ version test

---
 Dockerfile | 1 +
 circle.yml | 2 +-
 run.py     | 5 +++++
 3 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index e008592..51990d8 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -2,4 +2,5 @@ FROM nipy/mindboggle
 MAINTAINER Mindboggle <anishakeshavan@gmail.com>
 RUN mkdir ~/code
 COPY run.py ~/code/run.py
+COPY version ~/code/version
 ENTRYPOINT ["~/code/run.py"]
diff --git a/circle.yml b/circle.yml
index b9135f1..01dddb4 100644
--- a/circle.yml
+++ b/circle.yml
@@ -24,7 +24,7 @@ dependencies:
 
 test:
   override:
-    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/home/jovyan/work/bids_dataset -v ${HOME}/outputs1:/home/jovyan/work/bids_dataset/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /home/jovyan/work/bids_dataset /home/jovyan/work/bids_dataset/outputs participant --participant_label 01 :
+    - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/home/jovyan/work/bids_dataset -v ${HOME}/outputs1:/home/jovyan/work/bids_dataset/outputs bids/${CIRCLE_PROJECT_REPONAME,,} --version :
         timeout: 21600
 
 deployment:
diff --git a/run.py b/run.py
index 13adfa1..30a2a08 100755
--- a/run.py
+++ b/run.py
@@ -6,6 +6,8 @@
 from glob import glob
 from nipype.utils.filemanip import split_filename
 
+__version__ = open(os.path.join(os.path.dirname(os.path.realpath(__file__)), 'version')).read()
+
 def get_t1_images(basedir, subject_label):
     print(join(basedir,subject_label, "anat", "sub-%s_T1w.nii.gz" % (subject_label)))
     print(join(basedir,subject_label, "anat", "sub-%s_ses-*_T1w.nii.gz" % (subject_label)))
@@ -42,6 +44,9 @@ def run_mindboggle(image, subject_id, output_dir):
                                                 'participants can be specified with a space separated list.',
                     nargs="+")
 
+parser.add_argument('-v', '--version', action='version',
+                    version='BIDS-App Mindboggle version {}'.format(__version__))
+
 args = parser.parse_args()
 
 subjects_to_analyze = []