From d4b1183d19e44ca17942cdbbc635155159772769 Mon Sep 17 00:00:00 2001
From: nicholst <thomas.nichols@bdi.ox.ac.uk>
Date: Thu, 20 Feb 2020 00:34:06 +0100
Subject: [PATCH 1/5] Most minimal changes to resolve mkdocs navigation labels
 & section titles

---
 src/03-modality-agnostic-files.md                             | 2 +-
 .../01-magnetic-resonance-imaging-data.md                     | 2 +-
 src/04-modality-specific-files/02-magnetoencephalography.md   | 4 ++--
 src/04-modality-specific-files/03-electroencephalography.md   | 4 ++--
 .../04-intracranial-electroencephalography.md                 | 4 ++--
 src/05-longitudinal-and-multi-site-studies.md                 | 2 +-
 src/99-appendices/03-hed.md                                   | 4 ++--
 src/99-appendices/07-meg-systems.md                           | 4 ++--
 src/99-appendices/08-coordinate-systems.md                    | 2 +-
 9 files changed, 14 insertions(+), 14 deletions(-)

diff --git a/src/03-modality-agnostic-files.md b/src/03-modality-agnostic-files.md
index 3de671d99c..ab4a7ce90b 100644
--- a/src/03-modality-agnostic-files.md
+++ b/src/03-modality-agnostic-files.md
@@ -1,4 +1,4 @@
-# Modality-agnostic files
+# Modality agnostic files
 
 ## Dataset description
 
diff --git a/src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md b/src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md
index 66dc0de8b0..a210cb69c2 100644
--- a/src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md
+++ b/src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md
@@ -1,4 +1,4 @@
-# Magnetic Resonance Imaging data
+# Magnetic Resonance Imaging
 
 ## Common metadata fields
 
diff --git a/src/04-modality-specific-files/02-magnetoencephalography.md b/src/04-modality-specific-files/02-magnetoencephalography.md
index 8b8691f3f1..06435541c7 100644
--- a/src/04-modality-specific-files/02-magnetoencephalography.md
+++ b/src/04-modality-specific-files/02-magnetoencephalography.md
@@ -1,6 +1,6 @@
-# Magnetoencephalography (MEG)
+# Magnetoencephalography
 
-Support for MEG was developed as a [BIDS Extension Proposal](../06-extensions.md#bids-extension-proposals).
+Support for Magnetoencephalography (MEG) was developed as a [BIDS Extension Proposal](../06-extensions.md#bids-extension-proposals).
 Please cite the following paper when referring to this part of the standard in
 context of the academic literature:
 
diff --git a/src/04-modality-specific-files/03-electroencephalography.md b/src/04-modality-specific-files/03-electroencephalography.md
index 9553957fbc..88ccdf4732 100644
--- a/src/04-modality-specific-files/03-electroencephalography.md
+++ b/src/04-modality-specific-files/03-electroencephalography.md
@@ -1,6 +1,6 @@
-# Electroencephalography (EEG)
+# Electroencephalography
 
-Support for EEG was developed as a [BIDS Extension Proposal](../06-extensions.md#bids-extension-proposals).
+Support for Electroencephalography (EEG) was developed as a [BIDS Extension Proposal](../06-extensions.md#bids-extension-proposals).
 Please cite the following paper when referring to this part of the standard in
 context of the academic literature:
 
diff --git a/src/04-modality-specific-files/04-intracranial-electroencephalography.md b/src/04-modality-specific-files/04-intracranial-electroencephalography.md
index 8aebc27829..43f6a65060 100644
--- a/src/04-modality-specific-files/04-intracranial-electroencephalography.md
+++ b/src/04-modality-specific-files/04-intracranial-electroencephalography.md
@@ -1,6 +1,6 @@
-# intracranial Electroencephalography (iEEG)
+# Intracranial Electroencephalography
 
-Support for iEEG was developed as a [BIDS Extension Proposal](../06-extensions.md#bids-extension-proposals).
+Support for Intracranial Electroencephalography (iEEG) was developed as a [BIDS Extension Proposal](../06-extensions.md#bids-extension-proposals).
 Please cite the following paper when referring to this part of the standard in
 context of the academic literature:
 
diff --git a/src/05-longitudinal-and-multi-site-studies.md b/src/05-longitudinal-and-multi-site-studies.md
index e59d4b638f..c17d039340 100644
--- a/src/05-longitudinal-and-multi-site-studies.md
+++ b/src/05-longitudinal-and-multi-site-studies.md
@@ -1,4 +1,4 @@
-# Longitudinal studies with multiple sessions (visits)
+# Longitudinal and multi-site studies
 
 Multiple sessions (visits) are encoded by adding an extra layer of directories
 and file names in the form of `ses-<label>`. Session label can consist
diff --git a/src/99-appendices/03-hed.md b/src/99-appendices/03-hed.md
index c9c2a0ee0c..c42f5b37d7 100644
--- a/src/99-appendices/03-hed.md
+++ b/src/99-appendices/03-hed.md
@@ -1,6 +1,6 @@
-# Appendix III: Hierarchical Event Descriptor (HED) Tags
+# Appendix III: Hierarchical Event Descriptor
 
-HED is a controlled vocabulary of terms describing events in a behavioral
+Hierarchical Event Descriptors (HED) are a controlled vocabulary of terms describing events in a behavioral
 paradigm. HED was originally developed with EEG in mind, but is applicable to
 all behavioral experiments. Each level of a hierarchical tag is delimited with
 a forward slash (`/`). An HED string contains one or more HED tags separated by
diff --git a/src/99-appendices/07-meg-systems.md b/src/99-appendices/07-meg-systems.md
index 651de47e9c..8b88251e23 100644
--- a/src/99-appendices/07-meg-systems.md
+++ b/src/99-appendices/07-meg-systems.md
@@ -1,6 +1,6 @@
-# Appendix VII: preferred names of MEG systems
+# Appendix VII: MEG systems
 
-Restricted keywords for Manufacturer field in the `*_meg.json` file:
+Perferred names of MEG systems comprise restricted keywords for Manufacturer field in the `*_meg.json` file:
 
 -   [`CTF`](06-meg-file-formats.md#ctf)
 -   [`Neuromag/Elekta/Megin`](06-meg-file-formats.md#neuromagelektamegin)
diff --git a/src/99-appendices/08-coordinate-systems.md b/src/99-appendices/08-coordinate-systems.md
index 79ecdbed0e..7decbb8eee 100644
--- a/src/99-appendices/08-coordinate-systems.md
+++ b/src/99-appendices/08-coordinate-systems.md
@@ -1,4 +1,4 @@
-# Appendix VIII: Preferred Names of Coordinate Systems
+# Appendix VIII: Coordinate Systems
 
 To interpret a coordinate (x, y, z), it is required that you know relative to
 which origin the coordinates are expressed, you have to know the interpretation

From 0b64db6b6534e667d251033480a8cdc0ba672b7d Mon Sep 17 00:00:00 2001
From: nicholst <thomas.nichols@bdi.ox.ac.uk>
Date: Thu, 20 Feb 2020 00:37:51 +0100
Subject: [PATCH 2/5] Fix missing s in HEDs

---
 src/99-appendices/03-hed.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/99-appendices/03-hed.md b/src/99-appendices/03-hed.md
index c42f5b37d7..535e991b38 100644
--- a/src/99-appendices/03-hed.md
+++ b/src/99-appendices/03-hed.md
@@ -1,4 +1,4 @@
-# Appendix III: Hierarchical Event Descriptor
+# Appendix III: Hierarchical Event Descriptors
 
 Hierarchical Event Descriptors (HED) are a controlled vocabulary of terms describing events in a behavioral
 paradigm. HED was originally developed with EEG in mind, but is applicable to

From eed9c76995359fb75019e0a359abdabc70aa7407 Mon Sep 17 00:00:00 2001
From: nicholst <thomas.nichols@bdi.ox.ac.uk>
Date: Thu, 20 Feb 2020 00:39:24 +0100
Subject: [PATCH 3/5] mkdocs.yml changes

---
 mkdocs.yml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/mkdocs.yml b/mkdocs.yml
index c51148dccb..24acea42cf 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -27,21 +27,21 @@ nav:
         - Magnetic Resonance Imaging: 04-modality-specific-files/01-magnetic-resonance-imaging-data.md
         - Magnetoencephalography: 04-modality-specific-files/02-magnetoencephalography.md
         - Electroencephalography: 04-modality-specific-files/03-electroencephalography.md
-        - intracranial Electroencephalography: 04-modality-specific-files/04-intracranial-electroencephalography.md
+        - Intracranial Electroencephalography: 04-modality-specific-files/04-intracranial-electroencephalography.md
         - Task events: 04-modality-specific-files/05-task-events.md
         - Physiological and other continuous recordings: 04-modality-specific-files/06-physiological-and-other-continuous-recordings.md
         - Behavioral experiments (with no MRI): 04-modality-specific-files/07-behavioral-experiments.md
       - Longitudinal and multi-site studies: 05-longitudinal-and-multi-site-studies.md
-      - Extending the BIDS specification: 06-extensions.md
+      - BIDS Extension Proposals: 06-extensions.md
       - Appendix:
         - Contributors: 99-appendices/01-contributors.md
         - Licenses: 99-appendices/02-licenses.md
-        - HED: 99-appendices/03-hed.md
-        - Entity-table: 99-appendices/04-entity-table.md
+        - Hierarchical Event Descriptors: 99-appendices/03-hed.md
+        - Entity table: 99-appendices/04-entity-table.md
         - Units: 99-appendices/05-units.md
         - MEG file formats: 99-appendices/06-meg-file-formats.md
         - MEG systems: 99-appendices/07-meg-systems.md
-        - Coordinate-systems: 99-appendices/08-coordinate-systems.md
+        - Coordinate systems: 99-appendices/08-coordinate-systems.md
       - Changelog: CHANGES.md
     - The BIDS Starter Kit:
       - GitHub repository: https://github.com/bids-standard/bids-starter-kit

From dadffce0757d82444dcb283500aee2319dce87b4 Mon Sep 17 00:00:00 2001
From: nicholst <thomas.nichols@bdi.ox.ac.uk>
Date: Thu, 20 Feb 2020 08:06:47 +0100
Subject: [PATCH 4/5] Fix one more inconsistency - Coordinate Systems ->
 Coordinate systems

---
 src/99-appendices/08-coordinate-systems.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/99-appendices/08-coordinate-systems.md b/src/99-appendices/08-coordinate-systems.md
index 7decbb8eee..8bbd7ca824 100644
--- a/src/99-appendices/08-coordinate-systems.md
+++ b/src/99-appendices/08-coordinate-systems.md
@@ -1,4 +1,4 @@
-# Appendix VIII: Coordinate Systems
+# Appendix VIII: Coordinate systems
 
 To interpret a coordinate (x, y, z), it is required that you know relative to
 which origin the coordinates are expressed, you have to know the interpretation

From 9a24ab0b11a412063c4ad561cdd6182cf1de15e2 Mon Sep 17 00:00:00 2001
From: nicholst <thomas.nichols@bdi.ox.ac.uk>
Date: Thu, 20 Feb 2020 11:04:12 +0100
Subject: [PATCH 5/5] Edit to .circleci/artifact_path

---
 .circleci/artifact_path | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.circleci/artifact_path b/.circleci/artifact_path
index c0b5dbadac..6f3bd95cdc 100644
--- a/.circleci/artifact_path
+++ b/.circleci/artifact_path
@@ -1 +1 @@
-0/home/circleci/project/site/01-introduction.html
+0/site/01-introduction.html