diff --git a/mkdocs.yml b/mkdocs.yml index fbdf9ab833..60f0353ac2 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -48,6 +48,7 @@ nav: - MEG file formats: 99-appendices/06-meg-file-formats.md - MEG systems: 99-appendices/07-meg-systems.md - Coordinate systems: 99-appendices/08-coordinate-systems.md + - qMRI: 99-appendices/09-qmri.md - Changelog: CHANGES.md - The BIDS Starter Kit: - GitHub repository: https://github.com/bids-standard/bids-starter-kit diff --git a/src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md b/src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md index 625187c6a0..8721913ad8 100644 --- a/src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md +++ b/src/04-modality-specific-files/01-magnetic-resonance-imaging-data.md @@ -37,6 +37,17 @@ by Ben Inglis: | SequenceName | RECOMMENDED. Manufacturer’s designation of the sequence name. Corresponds to DICOM Tag 0018, 0024 `Sequence Name`. | | PulseSequenceDetails | RECOMMENDED. Information beyond pulse sequence type that identifies the specific pulse sequence used (i.e. "Standard Siemens Sequence distributed with the VB17 software," "Siemens WIP ### version #.##," or "Sequence written by X using a version compiled on MM/DD/YYYY"). | | NonlinearGradientCorrection | RECOMMENDED. Boolean stating if the image saved has been corrected for gradient nonlinearities by the scanner sequence. | +| MTState | RECOMMENDED. Boolean value (`true` or `false`), specifying whether the magnetization transfer pulse is applied. This parameter is REQUIRED by all the anatomical images grouped by `MTR`, `MTS` and `MPM` suffixes. This field originally corresponds to DICOM tag 0018, 9020 `Magnetization Transfer`. | +| MTOffsetFrequency | RECOMMENDED. The frequency offset of the magnetization transfer pulse with respect to the central H1 Larmor frequency in Hertz (Hz). | +| MTPulseBandwidth | RECOMMENDED. The excitation bandwidth of the magnetization transfer pulse in Hertz (Hz). | +| MTNumberOfPulses | RECOMMENDED. Number of magnetization transfer RF pulses applied before the readout. | +| MTPulseShape | RECOMMENDED. Shape of the magnetization transfer RF pulse waveform. Accepted values: `HARD`, `GAUSSIAN`, `GAUSSHANN` (gaussian pulse with Hanning window), `SINC`, `SINCHANN` (sinc pulse with Hanning window), `SINCGAUSS` (sinc pulse with Gaussian window), `FERMI`. | +| MTPulseDuration | RECOMMENDED. Duration of the magnetization transfer RF pulse in seconds. | +| SpoilingState | RECOMMENDED. Boolean value (`true` or `false`), specifying whether the pulse sequence uses any type of spoiling stratey to suppress transverse magnetization remaining after the readout. | +| SpoilingType | RECOMMENDED. Specifies which spoiling method(s) are used by a spoiled sequence. Accepted values: `RF`, `GRADIENT` or `COMBINED`. | +| SpoilingRFPhaseIncrement | RECOMMENDED. The amount of incrementation described in degrees, which is applied to the phase of the excitation pulse at each TR period for achieving RF spoiling. | +| SpoilingGradientMoment | RECOMMENDED. Zeroth moment of the spoiler gradient lobe in millitesla times second per meter (mT.s/m). | +| SpoilingGradientDuration | RECOMMENDED. The duration of the spoiler gradient lobe in seconds. The duration of a trapezoidal lobe is defined as the summation of ramp-up and plateu times. | #### In-Plane Spatial Encoding @@ -114,29 +125,253 @@ Template: ```Text sub-