From 58a8a69b6243a9344005ed65cacff75432eff1b8 Mon Sep 17 00:00:00 2001 From: Rockets2theMoon Date: Thu, 19 Sep 2024 10:47:57 -0700 Subject: [PATCH 1/9] summaries and intros - getting started section --- docs/getting_started/folders_and_files/index.md | 4 +++- docs/getting_started/resources/index.md | 3 +++ docs/getting_started/resources/talks.md | 2 +- docs/getting_started/tutorials/conversion/index.md | 3 +++ docs/getting_started/tutorials/index.md | 2 ++ 5 files changed, 12 insertions(+), 2 deletions(-) diff --git a/docs/getting_started/folders_and_files/index.md b/docs/getting_started/folders_and_files/index.md index b166498a..003c669b 100644 --- a/docs/getting_started/folders_and_files/index.md +++ b/docs/getting_started/folders_and_files/index.md @@ -1 +1,3 @@ -A BIDS dataset basically consists of a collection of folders and files. +# BIDS Folders and Files + +A BIDS dataset basically consists of a collection of folders and files that are organized and named in compliance with BIDS data outlines. The following sections provide more information on how to properly organize and name your data. diff --git a/docs/getting_started/resources/index.md b/docs/getting_started/resources/index.md index e69de29b..0a4fb10f 100644 --- a/docs/getting_started/resources/index.md +++ b/docs/getting_started/resources/index.md @@ -0,0 +1,3 @@ +# BIDS Resources + +The following collection of resources have been compiled to help you get started with BIDS. The links section has links to software tools to help you create and work with BIDS datasets, glossary and dependencies to help you get accustomed to common "jargon" and tools associated with working with BIDS, and some publications and talks covering recent work using BIDS organization and tools. \ No newline at end of file diff --git a/docs/getting_started/resources/talks.md b/docs/getting_started/resources/talks.md index 9ca44efc..e54072b2 100644 --- a/docs/getting_started/resources/talks.md +++ b/docs/getting_started/resources/talks.md @@ -1,6 +1,6 @@ # Talks and slides -You can find curated list of talks and slides: +BIDS-related talks and presentations are ongoing. Two great resources for curated lists of talks and slides are: - [on this project on OSF](https://osf.io/yn93h/) - [organized by playlist on the BIDS youtube channel](https://www.youtube.com/channel/UCxZUcYfd_nvIVWAbzRB1tlw/playlists) diff --git a/docs/getting_started/tutorials/conversion/index.md b/docs/getting_started/tutorials/conversion/index.md index e69de29b..37e1bd25 100644 --- a/docs/getting_started/tutorials/conversion/index.md +++ b/docs/getting_started/tutorials/conversion/index.md @@ -0,0 +1,3 @@ +# BIDS Conversion + +Converting data to BIDS organization and naming is typically the largest barrier to using BIDS tools. The following guides have been created to assist in converting raw imaging data into BIDS-compliant datasets. \ No newline at end of file diff --git a/docs/getting_started/tutorials/index.md b/docs/getting_started/tutorials/index.md index 493ab590..1536f327 100644 --- a/docs/getting_started/tutorials/index.md +++ b/docs/getting_started/tutorials/index.md @@ -1,5 +1,7 @@ # Tutorials +Many BIDS tutorials have been created by the greater BIDS community. We aim to add high more high-quality tutorials to this list as new tutorials are created and the maintainers become aware of them. If there are good tutorials that are missing from this list, please feel free to put in a request on github for them to be added to this website. + ## Video tutorials Check out the From 0d87c64bc65846bb2c57e71473380423c29a9ced Mon Sep 17 00:00:00 2001 From: Rockets2theMoon Date: Fri, 20 Sep 2024 08:21:55 -0700 Subject: [PATCH 2/9] Update docs/getting_started/folders_and_files/index.md looks good Co-authored-by: Anthony Galassi <28850131+bendhouseart@users.noreply.github.com> --- docs/getting_started/folders_and_files/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/getting_started/folders_and_files/index.md b/docs/getting_started/folders_and_files/index.md index 003c669b..db64efdc 100644 --- a/docs/getting_started/folders_and_files/index.md +++ b/docs/getting_started/folders_and_files/index.md @@ -1,3 +1,3 @@ # BIDS Folders and Files -A BIDS dataset basically consists of a collection of folders and files that are organized and named in compliance with BIDS data outlines. The following sections provide more information on how to properly organize and name your data. +A BIDS dataset consists of a collection of folders and files that are organized and named in compliance with BIDS data outlines. The following sections provide more information on how to properly organize and name your data. From 6aa8d9232f309bcde3afc68b0a3aece3be2ab7b7 Mon Sep 17 00:00:00 2001 From: Rockets2theMoon Date: Thu, 26 Sep 2024 09:36:12 -0700 Subject: [PATCH 3/9] Update docs/getting_started/folders_and_files/index.md thanks Co-authored-by: Remi Gau --- docs/getting_started/folders_and_files/index.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/docs/getting_started/folders_and_files/index.md b/docs/getting_started/folders_and_files/index.md index db64efdc..46da9c3b 100644 --- a/docs/getting_started/folders_and_files/index.md +++ b/docs/getting_started/folders_and_files/index.md @@ -1,3 +1,4 @@ # BIDS Folders and Files -A BIDS dataset consists of a collection of folders and files that are organized and named in compliance with BIDS data outlines. The following sections provide more information on how to properly organize and name your data. +A BIDS dataset consists of a collection of folders and files that are organized and named in compliance with the BIDS specification. +The following sections provide more information on how to properly organize and name your data. From f84115af66acf44c6197f796bef93b23ea012c5c Mon Sep 17 00:00:00 2001 From: Rockets2theMoon Date: Thu, 26 Sep 2024 09:51:57 -0700 Subject: [PATCH 4/9] Update index.md added breaks and updated text. --- docs/getting_started/resources/index.md | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/docs/getting_started/resources/index.md b/docs/getting_started/resources/index.md index 0a4fb10f..47440b0b 100644 --- a/docs/getting_started/resources/index.md +++ b/docs/getting_started/resources/index.md @@ -1,3 +1,6 @@ # BIDS Resources -The following collection of resources have been compiled to help you get started with BIDS. The links section has links to software tools to help you create and work with BIDS datasets, glossary and dependencies to help you get accustomed to common "jargon" and tools associated with working with BIDS, and some publications and talks covering recent work using BIDS organization and tools. \ No newline at end of file +The following collection of resources have been compiled to help you get started with BIDS. +The links section has links to software tools to help you create and work with BIDS datasets. +The glossary and dependencies sections have information to help you get accustomed to common BIDS "jargon" and an overview of software and programming languages associated with working with BIDS. +The talks and slides page has links to some recent presentations about using BIDS file organization and BIDS tools. From 5c76c62df82f44a23be936da227f5e7b178c33b4 Mon Sep 17 00:00:00 2001 From: Rockets2theMoon Date: Thu, 26 Sep 2024 09:52:39 -0700 Subject: [PATCH 5/9] Update talks.md break added --- docs/getting_started/resources/talks.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/docs/getting_started/resources/talks.md b/docs/getting_started/resources/talks.md index e54072b2..8e3af139 100644 --- a/docs/getting_started/resources/talks.md +++ b/docs/getting_started/resources/talks.md @@ -1,6 +1,7 @@ # Talks and slides -BIDS-related talks and presentations are ongoing. Two great resources for curated lists of talks and slides are: +BIDS-related talks and presentations are ongoing. +Two great resources for curated lists of talks and slides are: - [on this project on OSF](https://osf.io/yn93h/) - [organized by playlist on the BIDS youtube channel](https://www.youtube.com/channel/UCxZUcYfd_nvIVWAbzRB1tlw/playlists) From 7aaf5664c52bfff45e448d017bd1e55a09ea5478 Mon Sep 17 00:00:00 2001 From: Rockets2theMoon Date: Thu, 26 Sep 2024 10:07:54 -0700 Subject: [PATCH 6/9] Update docs/getting_started/tutorials/index.md added breaks, cleaned up wording, added issue link for submitting new tutorials. Co-authored-by: christinerogers --- docs/getting_started/tutorials/index.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/docs/getting_started/tutorials/index.md b/docs/getting_started/tutorials/index.md index 1536f327..5aec132d 100644 --- a/docs/getting_started/tutorials/index.md +++ b/docs/getting_started/tutorials/index.md @@ -1,6 +1,8 @@ # Tutorials -Many BIDS tutorials have been created by the greater BIDS community. We aim to add high more high-quality tutorials to this list as new tutorials are created and the maintainers become aware of them. If there are good tutorials that are missing from this list, please feel free to put in a request on github for them to be added to this website. +Many BIDS tutorials have been created by the greater BIDS community and a selection are linked here. +We aim to add more high-quality tutorials to this list as new tutorials are created and the maintainers become aware of them. +Let us know about tutorials that are missing from this list by submitting a [request on github](https://github.com/bids-standard/bids-website/issues) to add them to this website. ## Video tutorials From 6ed4a36aec1830da91948840b37f34613ec0048f Mon Sep 17 00:00:00 2001 From: Rockets2theMoon Date: Thu, 26 Sep 2024 10:28:09 -0700 Subject: [PATCH 7/9] Update docs/getting_started/tutorials/conversion/index.md simplified and edited per suggestions Co-authored-by: christinerogers --- docs/getting_started/tutorials/conversion/index.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/docs/getting_started/tutorials/conversion/index.md b/docs/getting_started/tutorials/conversion/index.md index 37e1bd25..6c4402db 100644 --- a/docs/getting_started/tutorials/conversion/index.md +++ b/docs/getting_started/tutorials/conversion/index.md @@ -1,3 +1,4 @@ # BIDS Conversion -Converting data to BIDS organization and naming is typically the largest barrier to using BIDS tools. The following guides have been created to assist in converting raw imaging data into BIDS-compliant datasets. \ No newline at end of file +We know that converting datasets to BIDS organization comes with some challenges, including file reorganization and renaming. +The following guides can help. \ No newline at end of file From 878b9622c4e894aa2458afc053bbdac9bf431f7e Mon Sep 17 00:00:00 2001 From: Rockets2theMoon Date: Thu, 26 Sep 2024 10:41:16 -0700 Subject: [PATCH 8/9] Update index.md updated per suggestions --- docs/getting_started/resources/index.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/docs/getting_started/resources/index.md b/docs/getting_started/resources/index.md index 47440b0b..331e69fd 100644 --- a/docs/getting_started/resources/index.md +++ b/docs/getting_started/resources/index.md @@ -2,5 +2,6 @@ The following collection of resources have been compiled to help you get started with BIDS. The links section has links to software tools to help you create and work with BIDS datasets. -The glossary and dependencies sections have information to help you get accustomed to common BIDS "jargon" and an overview of software and programming languages associated with working with BIDS. +The glossary section has explanations of common BIDS "jargon". +The dependencies section provides an overview of software and programming languages commonly used with BIDS. The talks and slides page has links to some recent presentations about using BIDS file organization and BIDS tools. From a68e4be73b6f712d24ec88c9f9396cad8369ee52 Mon Sep 17 00:00:00 2001 From: Rockets2theMoon Date: Thu, 26 Sep 2024 10:42:26 -0700 Subject: [PATCH 9/9] Update index.md small wording edit --- docs/getting_started/resources/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/getting_started/resources/index.md b/docs/getting_started/resources/index.md index 331e69fd..511bb388 100644 --- a/docs/getting_started/resources/index.md +++ b/docs/getting_started/resources/index.md @@ -1,7 +1,7 @@ # BIDS Resources The following collection of resources have been compiled to help you get started with BIDS. -The links section has links to software tools to help you create and work with BIDS datasets. +The links section has links to software tools for working with BIDS datasets. The glossary section has explanations of common BIDS "jargon". The dependencies section provides an overview of software and programming languages commonly used with BIDS. The talks and slides page has links to some recent presentations about using BIDS file organization and BIDS tools.