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Ontology-Search-Template.html
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Ontology-Search-Template.html
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<!DOCTYPE html>
<html>
<head>
<base target="_top">
<script src="https://code.jquery.com/jquery-1.9.1.js"></script>
<style>
body,
html {
font-family: 'Roboto', sans-serif;
font-size: 14px;
color: #666666;
padding: 10px;
}
p {
margin: 0;
}
.branding-above {
padding: 0;
top: 0;
}
.sidebar {
width: 94%;
}
.hidden {
display: none;
}
.error {
padding-top: 10px;
color: #e74c3c;
}
.branding-below {
bottom: 56px;
position: fixed;
background-color: #fff;
top: 0;
}
.branding-text {
left: 7px;
position: relative;
font-size: .9em;
top: 3px;
}
.proma-header {
padding-top: 5px;
height: 75px;
}
.col-contain {
overflow: hidden;
}
h3 {
margin-left: 5px;
margin-top: 0px;
margin-bottom: 0px;
text-align: left;
font-size: 1em;
padding: 5px 6px;
border-radius: 4px;
}
.col-one {
float: left;
width: 50%;
}
.logo {
vertical-align: middle;
width: 175px;
}
.pull-left {
float: left;
}
.pull-right {
float: right;
}
.width-100 {
width: 100%;
}
.search-results ul {
list-style: none;
margin: 0px;
text-align: left;
}
.term-info {
float: left;
width: 70%;
margin: 3%;
}
.term-buttons {
float: right;
width: 21%;
}
.search-results ul li {
padding: 4px;
font-weight: bolder;
font-size: .9em;
}
.search-results ul li a {
color: #5A9C43;
text-decoration: none;
}
.ontology-abbr {
text-align: left;
font-weight: bolder;
font-size: 1em;
color: #414241;
}
.ontology-name {
text-align: left;
font-weight: bolder;
font-size: .8em;
color: #95A5A5;
}
.term-count {
text-align: right;
padding: 7px 5px;
background-color: #4FBA6F;
color: #fff;
border-radius: 50%;
font-size: .8em;
}
.btn-green {
text-align: center;
padding: 5px 8px;
border-radius: 4px;
border: none;
background-color: #5A9C43;
width: 100%;
color: white;
display: block;
cursor: pointer;
}
.bth-green:hover {
background-color: #4FBA6F;
}
ul {
-webkit-padding-start: 5px;
}
.term-button button {
background-color: #ecf0f1;
color: #414241;
padding: 5px 8px;
border: none;
cursor: pointer;
display: block;
}
.clearfix:after {
content: " ";
/* Older browser do not support empty content */
visibility: hidden;
display: block;
height: 0;
clear: both;
}
#spinner {
margin-top: 60px;
text-align: center;
}
#spinner p {
font-weight: bolder;
color: color: #414241;
}
#search-text {
border: 1px solid #2f3640;
padding: 5px 6px;
border-radius: 4px;
}
.footer {
text-align: center;
position: absolute;
width: 242px;
bottom: 12px;
}
</style>
</head>
<body>
<div class="proma-header">
<img src="https://raw.githubusercontent.com/bigbio/proma/main/figures/logo_with_name.png" width="225" height="60">
</div>
<form>
<div class="block col-contain" style="margin-top:20px">
<div class="col-two">
<div id="ontomaton-search-panel">
<label for="search-text" style="font-size: 1em; color: #414241">Search Term</label>
<input type="text" name="search-text" id="search-text" value="" placeholder="e.g. cy5">
</div>
<br />
<div>
<h><b>* The service used by this window is OLS.<br />* The default service in the window named "Settings" is OLS.</b></h>
</div>
</div>
</div>
<div class="block" id="button-bar">
<button class="btn-green" id="run-search" style="width: 100%">Search</button>
</div>
<div id="search-results" class="block form-group search-results"
style="height:52vh; overflow: scroll; padding-top: 10px">
</div>
</form>
<div class="footer" align="center">
<img alt="Add-on logo" class="logo" src="https://isa-tools.org/OntoMaton/figures/ontomaton-search.png"><br />
<span class="gray branding-text">Powered by <a href="http://isa-tools.org/OntoMaton" target="_blank">OntoMaton</a>
</span>
</div>
<script>
/**
* On document load, assign click handlers to each button and try to load the
* user's origin and destination language preferences if previously set.
*/
$(function () {
$('#run-search').click(runSearch);
});
/**
* Taken from http://www.mustbebuilt.co.uk/2012/04/20/replaceall-function-for-javascript-and-actionscript/
*/
function replaceAll(oldStr, removeStr, replaceStr, caseSenitivity) {
var cs = "gi"
if (caseSenitivity == 1) {
cs = "g";
}
var myPattern = new RegExp(removeStr, cs);
return oldStr.replace(myPattern, replaceStr);
}
/**
* Inserts the term in to the spreadsheet.
*/
function insertTerm(term_id) {
google.script.run
.withSuccessHandler(
function (result, element) {
console.log("success")
}).withFailureHandler(
function (msg, element) {
console.log("failure")
showError(msg, $('#button-bar'));
element.disabled = false;
})
.withUserObject(this)
.handleTermInsertion(term_id);
}
/**
* Runs a server-side function to translate the user-selected text and update
* the sidebar UI with the resulting translation.
*/
function runSearch() {
var term = $('input[name=search-text]').val();
if(term === "") {
showError('Please enter a search term.', $('#button-bar'));
return
}
this.disabled = true;
$('#search-results').html('<div id="spinner"><img src="//s-media-cache-ak0.pinimg.com/originals/0a/59/71/0a59718a5ee79a0558930ca9907c0659.gif" width="70px"/><p>Searching...</p></div>');
$('#error').remove();
google.script.run
.withSuccessHandler(
function (result, element) {
// process results
var html = '<div id="accordion" class="accordion">';
console.log(result);
if (result) {
console.log("ontology-Search!!!");
Object.keys(result).sort().forEach(function(ontology_abbr) {
var ontology = result[ontology_abbr];
html += '<h3><span class="ontology-abbr">' + ontology_abbr + '</span> - <span class="ontology-name">' + ontology["ontology-name"] + '</span></h3>' +
'<div><ul>'
Object.keys(ontology["terms"]).forEach(function(term_idx) {
var term = ontology["terms"][term_idx];
var label = term["label"];
html += '<li>' +
'<div class="term-info">' +
'<a href="' + term["url"] + '" target="_blank">' + term["label"] + '</a>' +
'</div>' +
'<div class="term-button"><button onclick="insertTerm(\'' + term["id"] + '\'); return false;">Insert</button></div>' +
'<div class="clearfix"></div>' +
'</li>';
});
html += '</ul></div>';
});
} else {
html += "<p>Sorry, no results were found matching your query...</p>";
}
html += "</div>";
$('#search-results').html(html);
element.disabled = false;
$('#spinner').addClass("hidden");
})
.withFailureHandler(
function (msg, element) {
$('#spinner').addClass("hidden");
showError(msg, $('#button-bar'));
element.disabled = false;
})
.withUserObject(this)
.runSearch(term);
return false;
}
/**
* Inserts a div that contains an error message after a given element.
*
* @param msg The error message to display.
* @param element The element after which to display the error.
*/
function showError(msg, element) {
var div = $('<div id="error" class="error">' + msg + '</div>');
$(element).after(div);
}
</script>
</body>
</html>