NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(convert,data.frame)
S3method(convert,default)
S3method(convert,list)
S3method(convert,matrix)
S3method(replace,data.frame)
S3method(replace,default)
export(GATKR6)
export(abspath)
export(all_files_exist)
export(bamtagregex)
export(bamtofastq)
export(cellranger_count)
export(cellranger_mkref)
export(convert)
export(corename)
export(densest_subset)
export(expr_discretize)
export(expr_merge)
export(expr_normalize)
export(expr_quality_filter)
export(expr_read10x)
export(expr_read10xh5)
export(expr_scale)
export(expr_zero_to_na)
export(filter_gtf)
export(gatk_ApplyBQSR)
export(gatk_BaseRecalibrator)
export(gatk_BuildBamIndex)
export(gatk_CreateSomaticPanelOfNormals)
export(gatk_FilterMutectCalls)
export(gatk_FilterSamReadsTag)
export(gatk_GenomicsDBImport)
export(gatk_GetSampleName)
export(gatk_IndexFeatureFile)
export(gatk_MarkDuplicates)
export(gatk_MergeSamFiles)
export(gatk_Mutect2)
export(gatk_SortSam)
export(gatk_SplitNCigarReads)
export(gatk_make_pon)
export(gatk_prepare)
export(gatk_snv)
export(hdi)
export(is_nn)
export(mkdir)
export(read_fasta)
export(remap)
export(remove_constant)
export(replace)
export(replace_ordinal)
export(seq2tab)
export(tab2seq)
export(vcftools_filter)
export(vcm)
export(write_fasta)