fix the deprecates outs in dvc.lock files when they don't have a match in dvc.yaml files for each repo

[tomlue]

No description provided.

[zmughal]

• Remove old stages from dvc.lock biogrid#1
• Remove old stages from dvc.lock chebirdf#2
• https://github.com/biobricks-ai/rtecs/pull/1
• Remove old stages from dvc.lock cpcat#1
• Remove old stages from dvc.lock toxvaldb#1
• Remove old stages from dvc.lock cancerharmony#1
• Remove old stages from dvc.lock cpdat#1
• Remove old stages from dvc.lock dbgap#1
• Remove old stages from dvc.lock pdb#2
• Remove old stages from dvc.lock chembl#6
• Remove old stages from dvc.lock toxcast#2
• Remove old stages from dvc.lock moleculenet#1
• Remove old stages from dvc.lock chebi#1
• Remove old stages from dvc.lock zinc#1
• Remove old stages from dvc.lock uniprot-kg#1
• Remove old stages from dvc.lock USPTO_ChemReaction#1
• Remove old stages from dvc.lock openfda#1
• Remove old stages from dvc.lock mesh-kg#1
• Remove old stages from dvc.lock geneontology#2
• Remove old stages from dvc.lock qm9#1
• Remove old stages from dvc.lock pubchem#5

[zmughal]

This is done. The above change to brick-template would be useful to prevent the cause of most of the old stages.