From 92c1a56424bb8d56aa0f87dbc44dc68529f4954c Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Thu, 28 Dec 2023 04:09:34 +0000
Subject: [PATCH 1/4] Update ltr_retriever to 2.9.8

---
 recipes/ltr_retriever/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/ltr_retriever/meta.yaml b/recipes/ltr_retriever/meta.yaml
index 64ee4402ab215..2c483aefb73fc 100644
--- a/recipes/ltr_retriever/meta.yaml
+++ b/recipes/ltr_retriever/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "LTR_retriever" %}
-{% set version = "2.9.5" %}
-{% set sha256 = "f50812e6342a1d427a69e11e7ccbf21d7d72acf52c373fbd4ffdbe8a96dd62b7" %}
+{% set version = "2.9.8" %}
+{% set sha256 = "c5723c69c8897e717f03a7a0690a8f9b4a6c56991d947eddb224066ddf2d1448" %}
 
 package:
   name: "{{ name|lower }}"

From 425eb944e3f56b8b3e0687f9d3839d79611e68a3 Mon Sep 17 00:00:00 2001
From: joshuazhuang7 <joshua.zhuang@yahoo.com>
Date: Thu, 28 Dec 2023 19:49:41 -0600
Subject: [PATCH 2/4] add run_exports

---
 recipes/ltr_retriever/meta.yaml | 21 +++++++++++----------
 1 file changed, 11 insertions(+), 10 deletions(-)

diff --git a/recipes/ltr_retriever/meta.yaml b/recipes/ltr_retriever/meta.yaml
index 2c483aefb73fc..0945912461b47 100644
--- a/recipes/ltr_retriever/meta.yaml
+++ b/recipes/ltr_retriever/meta.yaml
@@ -13,21 +13,17 @@ source:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('ltr_retriever', max_pin="x") }}
 
-channels:
-  - bioconda
-  - anaconda
-  - conda-forge
-  - defaults
-  
 requirements:
   run:
     - perl-text-soundex
     - perl
     - cd-hit
     - repeatmasker <4.1.5
-    - rmblast <2.11
-    - libstdcxx-ng <13
+    - rmblast
+    - libstdcxx-ng
     - tesorter
 
 test:
@@ -36,8 +32,13 @@ test:
 
 about:
   home: https://github.com/oushujun/LTR_retriever
-  license: GPLv3
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: Sensitive and accurate identification of LTR retrotransposons
   dev_url: https://github.com/oushujun/LTR_retriever
+
+extra:
+  identifiers:
+    - doi:10.1104/pp.17.01310
+    - biotools:ltr_retriever

From 77b321973ed07121e3432e0f8b5e66a77ed2a2df Mon Sep 17 00:00:00 2001
From: mencian <joshua.zhuang@yahoo.com>
Date: Fri, 5 Jan 2024 09:09:57 -0600
Subject: [PATCH 3/4] revert channel specifications

---
 recipes/ltr_retriever/meta.yaml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/recipes/ltr_retriever/meta.yaml b/recipes/ltr_retriever/meta.yaml
index 0945912461b47..4b7ebb9dfcebf 100644
--- a/recipes/ltr_retriever/meta.yaml
+++ b/recipes/ltr_retriever/meta.yaml
@@ -16,6 +16,11 @@ build:
   run_exports:
     - {{ pin_subpackage('ltr_retriever', max_pin="x") }}
 
+channels:
+  - conda-forge
+  - bioconda
+  - defaults
+
 requirements:
   run:
     - perl-text-soundex

From 13dc8fee0428d04e94537d0f50732490e1800e65 Mon Sep 17 00:00:00 2001
From: joshuazhuang7 <joshua.zhuang@yahoo.com>
Date: Sun, 7 Jan 2024 11:06:18 -0600
Subject: [PATCH 4/4] remove channels section

---
 recipes/ltr_retriever/meta.yaml | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/recipes/ltr_retriever/meta.yaml b/recipes/ltr_retriever/meta.yaml
index 4b7ebb9dfcebf..0945912461b47 100644
--- a/recipes/ltr_retriever/meta.yaml
+++ b/recipes/ltr_retriever/meta.yaml
@@ -16,11 +16,6 @@ build:
   run_exports:
     - {{ pin_subpackage('ltr_retriever', max_pin="x") }}
 
-channels:
-  - conda-forge
-  - bioconda
-  - defaults
-
 requirements:
   run:
     - perl-text-soundex