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databases for functional assignment #39

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RNAer opened this issue Jan 13, 2016 · 1 comment
Open
2 of 5 tasks

databases for functional assignment #39

RNAer opened this issue Jan 13, 2016 · 1 comment

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@RNAer
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RNAer commented Jan 13, 2016

Just list out all the databases and rank them by their evidence credibility and usage. Rank will be used for hierarchical search.

This list is constantly updated and includes both seq and HMM databases:

  • UniRef (seq)
  • TIGRFAM (hmm)
  • HAMAP (hmm)
  • CLUSTERS (hmm)
  • CDD (hmm)
@mortonjt
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mortonjt commented Mar 3, 2016

We knocked out UniRef correct?

@tkosciol , you also mentioned some other databases worth looking into. Would you like to list them here?

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