SAM to uncompressed BAM with ~3000 contigs

[cc2qe]

On a SAM file with ~3000 contigs, Sambamba has problems converting a SAM file to uncompressed BAM. I've made a small example: http://colbychiang.com/hall/tmp/b.sam

$ sambamba_v0.5.4 view -S -f bam -l 0 b.sam  > b.bam
sambamba-view: [zlib] unknown error

Thanks,
Colby

[lomereiter]

Thanks for the testcase. Indeed the compression buffer size was incorrectly specified.