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I just came to report this as well. The 1.1 spec states explicitly that regexps used with sub need to be "double-escaped". Unfortunately it is not stated explicitly in 1.0, but it is implied by the example used with the sub command.
I was just battening down miniwdl's parsing of escape sequences in string literals, and got tripped up here:
tasks/common.wdl
Line 219 in c92755e
Looking at the WDL spec on escape sequences, do you think there should be a double-backslash instead of single here? (Would that break it?)
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