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@blab

Bedford Lab

Viruses, evolution and immunity at Fred Hutch.

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  1. nextflu nextflu Public

    Real-time tracking of influenza evolution

    JavaScript 88 19

  2. blotter blotter Public

    bedford lab research

    HTML 67 93

  3. global-migration global-migration Public

    Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 22

  4. baltic baltic Public

    Forked from evogytis/baltic

    baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is g…

    Jupyter Notebook 12 6

  5. siv-cst siv-cst Public

    Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

    Jupyter Notebook 6 2

  6. zika-seq zika-seq Public

    Pipelines to do MinION sequencing of Zika virus

    Python 15 3

Repositories

Showing 10 of 103 repositories
  • phylo-kernel-public Public

    Code and data for: "Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences".

    blab/phylo-kernel-public’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 11, 2024
  • evofr Public

    Tools for evolutionary forecasting

    blab/evofr’s past year of commit activity
    Jupyter Notebook 5 AGPL-3.0 1 5 2 Updated Dec 6, 2024
  • blotter Public

    bedford lab research

    blab/blotter’s past year of commit activity
    HTML 67 93 2 0 Updated Dec 5, 2024
  • ncov-usa-mig Public

    Analysis of SARS-CoV-2 Surveillance Sequences Across the United States

    blab/ncov-usa-mig’s past year of commit activity
    HTML 1 0 0 0 Updated Dec 3, 2024
  • pathogen-embed Public

    Create reduced dimension embeddings for pathogen sequences

    blab/pathogen-embed’s past year of commit activity
    Python 1 MIT 0 6 0 Updated Dec 2, 2024
  • ncov-escape Public Forked from nextstrain/ncov

    Nextstrain build for SARS-CoV-2 to calculate immune escape of circulating viruses

    blab/ncov-escape’s past year of commit activity
    Mathematica 0 MIT 410 4 1 Updated Nov 27, 2024
  • cartography Public

    Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2

    blab/cartography’s past year of commit activity
    HTML 5 MIT 1 1 0 Updated Nov 20, 2024
  • rt-from-frequency-dynamics Public

    Inferring variant-specific effective reproduction numbers from combined case and sequencing data

    blab/rt-from-frequency-dynamics’s past year of commit activity
    Mathematica 46 4 3 1 Updated Nov 20, 2024
  • relative-fitness-mechanisms Public

    Frequency dynamics predict viral fitness, antigenic relationships and epidemic growth

    blab/relative-fitness-mechanisms’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 16, 2024
  • fitness-flux Public

    Fitness dynamics of SARS-CoV-2 and seasonal influenza H3N2

    blab/fitness-flux’s past year of commit activity
    Mathematica 1 1 0 0 Updated Nov 12, 2024
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